Standard Mode | Switch to Expert Mode | Login to view past jobsRetrieve Phyre Job Id
 
Subscribe to Phyre at Google Groups
Email:
Visit Phyre at Google Groups
  Protein Homology/analogY Recognition Engine V 2.2
 

Fold library entry viewer: c2zkqa_

Fold library idPDB HeaderMoleculeTitle
c2zkqa_PDB header: ribosomal protein/rnaChain: A: PDB Molecule: 18s ribosomal rna;PDBTitle: structure of a mammalian ribosomal 40s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map


Added to library: Tue Mar 16 12:25:07 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence QMTLRGTLKGHGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSD
Predicted secondary structure






























SS confidence





































































Known secondary structure (DSSP)







B




SSTT
TTSSSSS



SSS


S
S
TT
 .........80.........90.........100.........110.........120.........130.........140
Sequence GQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQD
Predicted secondary structure





































































SS confidence





































































Known secondary structure (DSSP) SS
TT
SSSSS

SS
SSSSTTTTTT

 .........150.........160.........170.........180.........190.........200.........210
Sequence ESSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQ
Predicted secondary structure
































































SS confidence





































































Known secondary structure (DSSP)




TT
SSSS
TTS

TTT
S


SS

TTSSTTS
 .........220.........230.........240.........250.........260.........270.........280
Sequence AMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQ
Predicted secondary structure



















































SS confidence





































































Known secondary structure (DSSP) TTTTSS

TTSSSSS



SSS









SS
 .........290.........300......
Sequence CTSLAWSADGQTLFAGYTDNLVRVWQ
Predicted secondary structure








SS confidence

























Known secondary structure (DSSP)
SSTT
TTB


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Accessibility Statement
Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction
Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960
 
© Structural Bioinformatics Group, Imperial College, London
Michael Sternberg  
Disclaimer
Terms and Conditions
Structural Biology Group logo Imperial logo
BBSRC logo
Phyre2 is part of Genome3D