PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3p1lA_

Fold library id	PDB Header	Molecule	Title
c3p1lA_	PDB header: protein binding	Chain: A: PDB Molecule: lipoprotein yfgl;	PDBTitle: crystal structure of escherichia coli bamb, a lipoprotein component of2 the beta-barrel assembly machinery complex, native crystals.

Links to external resources
Added to library: Tue Dec 28 20:12:12 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence K M S P L P T V E N Q F T P T T A W S T S V G S G I G N F Y S N L H P A L A D N V V Y A A D R A G L V K A L N A D D G K E I W S V S L A E K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
T T T T T T S
T T
T T S T T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence D G W F S K E P A L L S G G V T V S G G H V Y I G S E K A Q V Y A L N T S D G T V A W Q T K V A G E A L S R P V V S D G L V L I H T S N G Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S
T T T T S T T T
S S
S
T T
T T S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence L Q A L N E A D G A V K W T V N L D M P S L S L R G E S A P T T A F G A A V V G G D N G R V S A V L M E Q G Q M I W Q Q R I S Q A T G S T E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T
S S
S S
T T
T T S T T T T
S
S
S S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence I D R L S D V D T T P V V V N G V V F A L A Y N G N L T A L D L R S G Q I M W K R E L G S V N D F I V D G N R I Y L V D Q N D R V M A L T I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
T T
T T S
T T T
T T
S S T T
T

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence D G G V T L W T Q S D L L H R L L T S P V L Y N G N L V V G D S E G Y L H W I N V E D G R F V A Q Q K V D S S G F Q T E P V A A D G K L L I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
T T T T S
T T
T T S T T T
S S
B
S
T T

. . . . . . . . . 360 .

Sequence Q A K D G T V Y S I T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) B T T S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	K	M	S	P	L	P	T	V	E	N	Q	F	T	P	T	T	A	W	S	T	S	V	G	S	G	I	G	N	F	Y	S	N	L	H	P	A	L	A	D	N	V	V	Y	A	A	D	R	A	G	L	V	K	A	L	N	A	D	D	G	K	E	I	W	S	V	S	L	A	E	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											S	S											T	T	T	T	T	T	S										T	T							T	T	S							T	T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	D	G	W	F	S	K	E	P	A	L	L	S	G	G	V	T	V	S	G	G	H	V	Y	I	G	S	E	K	A	Q	V	Y	A	L	N	T	S	D	G	T	V	A	W	Q	T	K	V	A	G	E	A	L	S	R	P	V	V	S	D	G	L	V	L	I	H	T	S	N	G	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S	S	S															T	T							T	T	S							T	T	T										S	S				S						T	T							T	T	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	L	Q	A	L	N	E	A	D	G	A	V	K	W	T	V	N	L	D	M	P	S	L	S	L	R	G	E	S	A	P	T	T	A	F	G	A	A	V	V	G	G	D	N	G	R	V	S	A	V	L	M	E	Q	G	Q	M	I	W	Q	Q	R	I	S	Q	A	T	G	S	T	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						T	T	T													S	S			S	S								T	T							T	T	S							T	T	T	T									S			S		S	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	I	D	R	L	S	D	V	D	T	T	P	V	V	V	N	G	V	V	F	A	L	A	Y	N	G	N	L	T	A	L	D	L	R	S	G	Q	I	M	W	K	R	E	L	G	S	V	N	D	F	I	V	D	G	N	R	I	Y	L	V	D	Q	N	D	R	V	M	A	L	T	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T	T											T	T							T	T	S							T	T	T								T	T										S	S							T	T								T
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	D	G	G	V	T	L	W	T	Q	S	D	L	L	H	R	L	L	T	S	P	V	L	Y	N	G	N	L	V	V	G	D	S	E	G	Y	L	H	W	I	N	V	E	D	G	R	F	V	A	Q	Q	K	V	D	S	S	G	F	Q	T	E	P	V	A	A	D	G	K	L	L	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T									T	T	T	T	S									T	T							T	T	S							T	T	T											S	S		B		S						T	T
	.	.	.	.	.	.	.	.	.	360	.
Sequence	Q	A	K	D	G	T	V	Y	S	I	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		B	T	T	S