Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	K	Q	A	L	R	V	A	F	G	F	L	I	L	W	A	S	V	L	H	A	E	V	R	I	V	I	D	S	G	V	D	S	G	R	P	I	G	V	V	P	F	Q	W	A	G	P	G	A	A	P	E	D	I	G	G	I	V	A	A
Secondary structure
SS confidence
Disorder		?	?																	?											?		?	?								?		?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		D	L	R	N	S	G	K	F	N	P	L	D	R	A	R	L	P	Q	Q	P	G	S	A	Q	E	V	Q	P	A	A	W	S	A	L	G	I	D	A	V	V	V	G	Q	V	T	P	N	P	D	G	S	Y	N	V	A	Y	Q	L	V	D
Secondary structure
SS confidence
Disorder													?	?	?	?	?	?	?	?	?	?	?	?	?	?				?																		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		T	G	G	A	P	G	T	V	L	A	Q	N	S	Y	K	V	N	K	Q	W	L	R	Y	A	G	H	T	A	S	D	E	V	F	E	K	L	T	G	I	K	G	A	F	R	T	R	I	A	Y	V	V	Q	T	N	G	G	Q	F	P	Y
Secondary structure
SS confidence
Disorder														?	?	?	?	?	?	?	?																			?	?	?														?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		E	L	R	V	S	D	Y	D	G	Y	N	Q	F	V	V	H	R	S	P	Q	P	L	M	S	P	A	W	S	P	D	G	S	K	L	A	Y	V	T	F	E	S	G	R	S	A	L	V	I	Q	T	L	A	N	G	A	V	R	Q	V	A
Secondary structure
SS confidence
Disorder																						?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		S	F	P	R	H	N	G	A	P	A	F	S	P	D	G	S	K	L	A	F	A	L	S	K	T	G	S	L	N	L	Y	V	M	D	L	A	S	G	Q	I	R	Q	V	T	D	G	R	S	N	N	T	E	P	T	W	F	P	D	S	Q
Secondary structure
SS confidence
Disorder						?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		N	L	A	F	T	S	D	Q	A	G	R	P	Q	V	Y	K	V	N	I	N	G	G	A	P	Q	R	I	T	W	E	G	S	Q	N	Q	D	A	D	V	S	S	D	G	K	F	M	V	M	V	S	S	N	G	G	Q	Q	H	I	A	K
Secondary structure
SS confidence
Disorder																																	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		Q	D	L	A	T	G	G	V	Q	V	L	S	S	T	F	L	D	E	T	P	S	L	A	P	N	G	T	M	V	I	Y	S	S	S	Q	G	M	G	S	V	L	N	L	V	S	T	D	G	R	F	K	A	R	L	P	A	T	D	G	Q
Secondary structure
SS confidence
Disorder																																																													?
Disorder confidence
		.	.	.	.	.	.	.	.	.	430
Sequence		V	K	F	P	A	W	S	P	Y	L
Secondary structure
SS confidence
Disorder						?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2w8b chain B Region: 22 - 430 Aligned: 409 Modelled: 409 Confidence: 100.0% Identity: 100% PDB header:protein transport/membrane protein Chain: B: PDB Molecule:protein tolb; PDBTitle: crystal structure of processed tolb in complex with pal Phyre2 PDB 2ivz chain D Region: 33 - 430 Aligned: 387 Modelled: 398 Confidence: 100.0% Identity: 100% PDB header:protein transport/hydrolase Chain: D: PDB Molecule:protein tolb; PDBTitle: structure of tolb in complex with a peptide of the colicin2 e9 t-domain Phyre2 PDB 2hqs chain A domain 1 Region: 162 - 430 Aligned: 269 Modelled: 269 Confidence: 100.0% Identity: 100% Fold: 6-bladed beta-propeller Superfamily: TolB, C-terminal domain Family: TolB, C-terminal domain Phyre2 PDB 1k32 chain E Region: 156 - 428 Aligned: 261 Modelled: 273 Confidence: 100.0% Identity: 21% PDB header:hydrolase Chain: E: PDB Molecule:tricorn protease; PDBTitle: crystal structure of the tricorn protease Phyre2 PDB 1n6d chain E Region: 156 - 428 Aligned: 261 Modelled: 273 Confidence: 100.0% Identity: 21% PDB header:hydrolase Chain: E: PDB Molecule:tricorn protease; PDBTitle: tricorn protease in complex with tetrapeptide chloromethyl2 ketone derivative Phyre2 PDB 1k32 chain A domain 2 Region: 153 - 418 Aligned: 253 Modelled: 266 Confidence: 100.0% Identity: 16% Fold: 6-bladed beta-propeller Superfamily: Tricorn protease N-terminal domain Family: Tricorn protease N-terminal domain Phyre2 PDB 3pe7 chain A Region: 179 - 428 Aligned: 250 Modelled: 250 Confidence: 100.0% Identity: 17% PDB header:lyase Chain: A: PDB Molecule:oligogalacturonate lyase; PDBTitle: oligogalacturonate lyase in complex with manganese Phyre2 PDB 2gop chain B Region: 155 - 428 Aligned: 264 Modelled: 274 Confidence: 100.0% Identity: 11% PDB header:hydrolase Chain: B: PDB Molecule:trilobed protease; PDBTitle: the beta-propeller domain of the trilobed protease from pyrococcus2 furiosus reveals an open velcro topology Phyre2 PDB 2ojh chain A Region: 176 - 428 Aligned: 249 Modelled: 253 Confidence: 99.9% Identity: 22% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein atu1656/agr_c_3050; PDBTitle: the structure of putative tolb from agrobacterium tumefaciens Phyre2 PDB 3c5m chain C Region: 180 - 428 Aligned: 249 Modelled: 249 Confidence: 99.9% Identity: 15% PDB header:lyase Chain: C: PDB Molecule:oligogalacturonate lyase; PDBTitle: crystal structure of oligogalacturonate lyase (vpa0088)2 from vibrio parahaemolyticus. northeast structural3 genomics consortium target vpr199 Phyre2 PDB 1k32 chain A domain 3 Region: 162 - 418 Aligned: 243 Modelled: 256 Confidence: 99.9% Identity: 19% Fold: 7-bladed beta-propeller Superfamily: Tricorn protease domain 2 Family: Tricorn protease domain 2 Phyre2 PDB 1orv chain A domain 1 Region: 161 - 428 Aligned: 264 Modelled: 268 Confidence: 99.9% Identity: 19% Fold: 8-bladed beta-propeller Superfamily: DPP6 N-terminal domain-like Family: DPP6 N-terminal domain-like Phyre2 PDB 2eep chain A Region: 161 - 428 Aligned: 257 Modelled: 268 Confidence: 99.9% Identity: 19% PDB header:hydrolase Chain: A: PDB Molecule:dipeptidyl aminopeptidase iv, putative; PDBTitle: prolyl tripeptidyl aminopeptidase complexed with an inhibitor Phyre2 PDB 2bgr chain A domain 1 Region: 161 - 428 Aligned: 264 Modelled: 268 Confidence: 99.9% Identity: 15% Fold: 8-bladed beta-propeller Superfamily: DPP6 N-terminal domain-like Family: DPP6 N-terminal domain-like Phyre2 PDB 1xfd chain A domain 1 Region: 182 - 428 Aligned: 243 Modelled: 247 Confidence: 99.9% Identity: 21% Fold: 8-bladed beta-propeller Superfamily: DPP6 N-terminal domain-like Family: DPP6 N-terminal domain-like Phyre2 PDB 1xfd chain D Region: 161 - 428 Aligned: 264 Modelled: 268 Confidence: 99.9% Identity: 17% PDB header:membrane protein Chain: D: PDB Molecule:dipeptidyl aminopeptidase-like protein 6; PDBTitle: structure of a human a-type potassium channel accelerating factor2 dppx, a member of the dipeptidyl aminopeptidase family Phyre2 PDB 1z68 chain A Region: 162 - 428 Aligned: 263 Modelled: 266 Confidence: 99.9% Identity: 17% PDB header:lyase Chain: A: PDB Molecule:fibroblast activation protein, alpha subunit; PDBTitle: crystal structure of human fibroblast activation protein alpha Phyre2 PDB 2g5t chain A Region: 161 - 426 Aligned: 262 Modelled: 264 Confidence: 99.9% Identity: 15% PDB header:hydrolase Chain: A: PDB Molecule:dipeptidyl peptidase 4; PDBTitle: crystal structure of human dipeptidyl peptidase iv (dppiv)2 complexed with cyanopyrrolidine (c5-pro-pro) inhibitor 21ag Phyre2 PDB 2ecf chain A Region: 161 - 428 Aligned: 261 Modelled: 268 Confidence: 99.9% Identity: 20% PDB header:hydrolase Chain: A: PDB Molecule:dipeptidyl peptidase iv; PDBTitle: crystal structure of dipeptidyl aminopeptidase iv from2 stenotrophomonas maltophilia Phyre2 PDB 2hqs chain A domain 2 Region: 28 - 161 Aligned: 134 Modelled: 134 Confidence: 99.9% Identity: 100% Fold: Anticodon-binding domain-like Superfamily: TolB, N-terminal domain Family: TolB, N-terminal domain Phyre2 PDB 2jna chain A domain 1 Region: 1 - 72 Aligned: 72 Modelled: 72 Confidence: 63.2% Identity: 15% Fold: Dodecin subunit-like Superfamily: YdgH-like Family: YdgH-like Phyre2 1 c2w8bB_ 2 c2ivzD_ 3 d2hqsa1 4 c1k32E_ 5 c1n6dE_ 6 d1k32a2 7 c3pe7A_ 8 c2gopB_ 9 c2ojhA_ 10 c3c5mC_ 11 d1k32a3 12 d1orva1 13 c2eepA_ 14 d2bgra1 15 d1xfda1 16 c1xfdD_ 17 c1z68A_ 18 c2g5tA_ 19 c2ecfA_ 20 d2hqsa2 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 d2jnaa1 180 181 182 183 184 185

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2w8bB_ 100.0 100 PDB header:protein transport/membrane protein Chain: B: PDB Molecule:protein tolb; PDBTitle: crystal structure of processed tolb in complex with pal 2 c2ivzD_ 100.0 100 PDB header:protein transport/hydrolase Chain: D: PDB Molecule:protein tolb; PDBTitle: structure of tolb in complex with a peptide of the colicin2 e9 t-domain 3 d2hqsa1 100.0 100 Fold:6-bladed beta-propeller Superfamily:TolB, C-terminal domain Family:TolB, C-terminal domain 4 c1k32E_ 100.0 21 PDB header:hydrolase Chain: E: PDB Molecule:tricorn protease; PDBTitle: crystal structure of the tricorn protease 5 c1n6dE_ 100.0 21 PDB header:hydrolase Chain: E: PDB Molecule:tricorn protease; PDBTitle: tricorn protease in complex with tetrapeptide chloromethyl2 ketone derivative 6 d1k32a2 100.0 16 Fold:6-bladed beta-propeller Superfamily:Tricorn protease N-terminal domain Family:Tricorn protease N-terminal domain 7 c3pe7A_ 100.0 17 PDB header:lyase Chain: A: PDB Molecule:oligogalacturonate lyase; PDBTitle: oligogalacturonate lyase in complex with manganese 8 c2gopB_ 100.0 11 PDB header:hydrolase Chain: B: PDB Molecule:trilobed protease; PDBTitle: the beta-propeller domain of the trilobed protease from pyrococcus2 furiosus reveals an open velcro topology 9 c2ojhA_ 99.9 22 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein atu1656/agr_c_3050; PDBTitle: the structure of putative tolb from agrobacterium tumefaciens 10 c3c5mC_ 99.9 15 PDB header:lyase Chain: C: PDB Molecule:oligogalacturonate lyase; PDBTitle: crystal structure of oligogalacturonate lyase (vpa0088)2 from vibrio parahaemolyticus. northeast structural3 genomics consortium target vpr199 11 d1k32a3 99.9 19 Fold:7-bladed beta-propeller Superfamily:Tricorn protease domain 2 Family:Tricorn protease domain 2 12 d1orva1 99.9 19 Fold:8-bladed beta-propeller Superfamily:DPP6 N-terminal domain-like Family:DPP6 N-terminal domain-like 13 c2eepA_ 99.9 19 PDB header:hydrolase Chain: A: PDB Molecule:dipeptidyl aminopeptidase iv, putative; PDBTitle: prolyl tripeptidyl aminopeptidase complexed with an inhibitor 14 d2bgra1 99.9 15 Fold:8-bladed beta-propeller Superfamily:DPP6 N-terminal domain-like Family:DPP6 N-terminal domain-like 15 d1xfda1 99.9 21 Fold:8-bladed beta-propeller Superfamily:DPP6 N-terminal domain-like Family:DPP6 N-terminal domain-like 16 c1xfdD_ 99.9 17 PDB header:membrane protein Chain: D: PDB Molecule:dipeptidyl aminopeptidase-like protein 6; PDBTitle: structure of a human a-type potassium channel accelerating factor2 dppx, a member of the dipeptidyl aminopeptidase family 17 c1z68A_ 99.9 17 PDB header:lyase Chain: A: PDB Molecule:fibroblast activation protein, alpha subunit; PDBTitle: crystal structure of human fibroblast activation protein alpha 18 c2g5tA_ 99.9 15 PDB header:hydrolase Chain: A: PDB Molecule:dipeptidyl peptidase 4; PDBTitle: crystal structure of human dipeptidyl peptidase iv (dppiv)2 complexed with cyanopyrrolidine (c5-pro-pro) inhibitor 21ag 19 c2ecfA_ 99.9 20 PDB header:hydrolase Chain: A: PDB Molecule:dipeptidyl peptidase iv; PDBTitle: crystal structure of dipeptidyl aminopeptidase iv from2 stenotrophomonas maltophilia 20 d2hqsa2 99.9 100 Fold:Anticodon-binding domain-like Superfamily:TolB, N-terminal domain Family:TolB, N-terminal domain 21 c2qtbB_ not modelled 99.9 15 PDB header:hydrolase Chain: B: PDB Molecule:dipeptidyl peptidase 4; PDBTitle: human dipeptidyl peptidase iv/cd26 in complex with a 4-aryl2 cyclohexylalanine inhibitor 22 c3bwsA_ not modelled 99.9 10 PDB header:unknown function Chain: A: PDB Molecule:protein lp49; PDBTitle: crystal structure of the leptospiral antigen lp49 23 c2hu7A_ not modelled 99.9 15 PDB header:hydrolase Chain: A: PDB Molecule:acylamino-acid-releasing enzyme; PDBTitle: binding of inhibitors by acylaminoacyl peptidase 24 c3dm0A_ not modelled 99.9 16 PDB header:sugar binding protein,signaling protein Chain: A: PDB Molecule:maltose-binding periplasmic protein fused with PDBTitle: maltose binding protein fusion with rack1 from a. thaliana 25 c3fgbB_ not modelled 99.9 18 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein q89zh8_bactn; PDBTitle: crystal structure of the q89zh8_bactn protein from2 bacteroides thetaiotaomicron. northeast structural3 genomics consortium target btr289b. 26 c2i0tB_ not modelled 99.8 13 PDB header:oxidoreductase Chain: B: PDB Molecule:aromatic amine dehydrogenase; PDBTitle: crystal structure of phenylacetaldehyde derived r-2 carbinolamine adduct of aromatic amine dehydrogenase 27 c1gq1B_ not modelled 99.8 12 PDB header:oxidoreductase Chain: B: PDB Molecule:cytochrome cd1 nitrite reductase; PDBTitle: cytochrome cd1 nitrite reductase, y25s mutant, oxidised2 form 28 c3u4yA_ not modelled 99.8 11 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: the crystal structure of a functionally unknown protein (dtox_1751)2 from desulfotomaculum acetoxidans dsm 771. 29 d1l0qa2 not modelled 99.8 17 Fold:7-bladed beta-propeller Superfamily:YVTN repeat-like/Quinoprotein amine dehydrogenase Family:YVTN repeat 30 d1qfma1 not modelled 99.8 15 Fold:7-bladed beta-propeller Superfamily:Peptidase/esterase 'gauge' domain Family:Prolyl oligopeptidase, N-terminal domain 31 c2j57J_ not modelled 99.8 15 PDB header:oxidoreductase Chain: J: PDB Molecule:methylamine dehydrogenase heavy chain; PDBTitle: x-ray reduced paraccocus denitrificans methylamine2 dehydrogenase n-quinol in complex with amicyanin. 32 c2h47F_ not modelled 99.8 13 PDB header:oxidoreductase/electron transport Chain: F: PDB Molecule:aromatic amine dehydrogenase; PDBTitle: crystal structure of an electron transfer complex between2 aromatic amine dephydrogenase and azurin from alcaligenes3 faecalis (form 1) 33 c3mkqA_ not modelled 99.8 11 PDB header:transport protein Chain: A: PDB Molecule:coatomer beta'-subunit; PDBTitle: crystal structure of yeast alpha/betaprime-cop subcomplex of the copi2 vesicular coat 34 c1nr0A_ not modelled 99.8 11 PDB header:structural protein Chain: A: PDB Molecule:actin interacting protein 1; PDBTitle: two seven-bladed beta-propeller domains revealed by the2 structure of a c. elegans homologue of yeast actin3 interacting protein 1 (aip1). 35 c3jroA_ not modelled 99.8 13 PDB header:transport protein, structural protein Chain: A: PDB Molecule:fusion protein of protein transport protein sec13 PDBTitle: nup84-nup145c-sec13 edge element of the npc lattice 36 c1yr2A_ not modelled 99.8 16 PDB header:hydrolase Chain: A: PDB Molecule:prolyl oligopeptidase; PDBTitle: structural and mechanistic analysis of two prolyl endopeptidases: role2 of inter-domain dynamics in catalysis and specificity 37 c2bklB_ not modelled 99.8 14 PDB header:hydrolase Chain: B: PDB Molecule:prolyl endopeptidase; PDBTitle: structural and mechanistic analysis of two prolyl2 endopeptidases: role of inter-domain dynamics in3 catalysis and specificity 38 c1nnoA_ not modelled 99.8 13 PDB header:oxidoreductase Chain: A: PDB Molecule:nitrite reductase; PDBTitle: conformational changes occurring upon no binding in nitrite2 reductase from pseudomonas aeruginosa 39 c3c75J_ not modelled 99.8 13 PDB header:oxidoreductase Chain: J: PDB Molecule:methylamine dehydrogenase heavy chain; PDBTitle: paracoccus versutus methylamine dehydrogenase in complex2 with amicyanin 40 c2oajA_ not modelled 99.8 12 PDB header:endocytosis/exocytosis Chain: A: PDB Molecule:protein sni1; PDBTitle: crystal structure of sro7 from s. cerevisiae 41 c1l0qC_ not modelled 99.8 17 PDB header:protein binding Chain: C: PDB Molecule:surface layer protein; PDBTitle: tandem yvtn beta-propeller and pkd domains from an archaeal surface2 layer protein 42 c1qfmA_ not modelled 99.8 14 PDB header:hydrolase Chain: A: PDB Molecule:protein (prolyl oligopeptidase); PDBTitle: prolyl oligopeptidase from porcine muscle 43 c3iytG_ not modelled 99.8 13 PDB header:apoptosis Chain: G: PDB Molecule:apoptotic protease-activating factor 1; PDBTitle: structure of an apoptosome-procaspase-9 card complex 44 d1ri6a_ not modelled 99.8 13 Fold:7-bladed beta-propeller Superfamily:Putative isomerase YbhE Family:Putative isomerase YbhE 45 d2bbkh_ not modelled 99.8 16 Fold:7-bladed beta-propeller Superfamily:YVTN repeat-like/Quinoprotein amine dehydrogenase Family:Methylamine dehydrogenase, H-chain 46 c3azqA_ not modelled 99.8 14 PDB header:hydrolase Chain: A: PDB Molecule:aminopeptidase; PDBTitle: crystal structure of puromycin hydrolase s511a mutant complexed with2 pgg 47 c2j04B_ not modelled 99.8 11 PDB header:transcription Chain: B: PDB Molecule:ydr362cp; PDBTitle: the tau60-tau91 subcomplex of yeast transcription factor2 iiic 48 d1qnia2 not modelled 99.8 9 Fold:7-bladed beta-propeller Superfamily:Nitrous oxide reductase, N-terminal domain Family:Nitrous oxide reductase, N-terminal domain 49 d1ospo_ not modelled 99.8 14 Fold:open-sided beta-meander Superfamily:Outer surface protein Family:Outer surface protein 50 d2madh_ not modelled 99.7 14 Fold:7-bladed beta-propeller Superfamily:YVTN repeat-like/Quinoprotein amine dehydrogenase Family:Methylamine dehydrogenase, H-chain 51 d1jmxb_ not modelled 99.7 16 Fold:7-bladed beta-propeller Superfamily:YVTN repeat-like/Quinoprotein amine dehydrogenase Family:Quinohemoprotein amine dehydrogenase B chain 52 d1fwxa2 not modelled 99.7 8 Fold:7-bladed beta-propeller Superfamily:Nitrous oxide reductase, N-terminal domain Family:Nitrous oxide reductase, N-terminal domain 53 c3iumA_ not modelled 99.7 11 PDB header:hydrolase Chain: A: PDB Molecule:prolyl endopeptidase; PDBTitle: appep_wtx opened state 54 c2aq5A_ not modelled 99.7 14 PDB header:structural protein Chain: A: PDB Molecule:coronin-1a; PDBTitle: crystal structure of murine coronin-1 55 c1r5mA_ not modelled 99.7 17 PDB header:transcription Chain: A: PDB Molecule:sir4-interacting protein sif2; PDBTitle: crystal structure of the c-terminal wd40 domain of sif2 56 c3hfqB_ not modelled 99.7 15 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein lp_2219; PDBTitle: crystal structure of the lp_2219 protein from lactobacillus2 plantarum. northeast structural genomics consortium target3 lpr118. 57 d1pbyb_ not modelled 99.7 19 Fold:7-bladed beta-propeller Superfamily:YVTN repeat-like/Quinoprotein amine dehydrogenase Family:Quinohemoprotein amine dehydrogenase B chain 58 d1qksa2 not modelled 99.7 12 Fold:8-bladed beta-propeller Superfamily:C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase Family:C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase 59 c2pbiB_ not modelled 99.7 13 PDB header:signaling protein Chain: B: PDB Molecule:guanine nucleotide-binding protein subunit beta 5; PDBTitle: the multifunctional nature of gbeta5/rgs9 revealed from its crystal2 structure 60 c3jrpA_ not modelled 99.7 13 PDB header:transport protein, structural protein Chain: A: PDB Molecule:fusion protein of protein transport protein sec13 PDBTitle: sec13 with nup145c (aa109-179) insertion blade 61 d1nira2 not modelled 99.7 15 Fold:8-bladed beta-propeller Superfamily:C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase Family:C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase 62 d1tbga_ not modelled 99.7 14 Fold:7-bladed beta-propeller Superfamily:WD40 repeat-like Family:WD40-repeat 63 c3g4hB_ not modelled 99.7 13 PDB header:hydrolase Chain: B: PDB Molecule:regucalcin; PDBTitle: crystal structure of human senescence marker protein-30 (zinc bound) 64 c2xe4A_ not modelled 99.7 14 PDB header:hydrolase/inhibitor Chain: A: PDB Molecule:oligopeptidase b; PDBTitle: structure of oligopeptidase b from leishmania major 65 c2w18A_ not modelled 99.7 10 PDB header:nuclear protein Chain: A: PDB Molecule:partner and localizer of brca2; PDBTitle: crystal structure of the c-terminal wd40 domain of human2 palb2 66 d1gxra_ not modelled 99.7 11 Fold:7-bladed beta-propeller Superfamily:WD40 repeat-like Family:WD40-repeat 67 c1qniE_ not modelled 99.6 6 PDB header:oxidoreductase Chain: E: PDB Molecule:nitrous-oxide reductase; PDBTitle: crystal structure of nitrous oxide reductase from2 pseudomonas nautica, at 2.4a resolution 68 c1fwxB_ not modelled 99.6 10 PDB header:oxidoreductase Chain: B: PDB Molecule:nitrous oxide reductase; PDBTitle: crystal structure of nitrous oxide reductase from p. denitrificans 69 c2gnqA_ not modelled 99.6 20 PDB header:transcription Chain: A: PDB Molecule:wd-repeat protein 5; PDBTitle: structure of wdr5 70 c3iz6a_ not modelled 99.6 14 PDB header:ribosome Chain: A: PDB Molecule:40s ribosomal protein sa (s2p); PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 71 c1pi6A_ not modelled 99.6 10 PDB header:protein binding Chain: A: PDB Molecule:actin interacting protein 1; PDBTitle: yeast actin interacting protein 1 (aip1), orthorhombic crystal form 72 d1yfqa_ not modelled 99.6 12 Fold:7-bladed beta-propeller Superfamily:WD40 repeat-like Family:Cell cycle arrest protein BUB3 73 c2vduB_ not modelled 99.6 14 PDB header:transferase Chain: B: PDB Molecule:trna (guanine-n(7)-)-methyltransferase- PDBTitle: structure of trm8-trm82, the yeast trna m7g methylation2 complex 74 c3lrvA_ not modelled 99.6 13 PDB header:splicing Chain: A: PDB Molecule:pre-mrna-splicing factor 19; PDBTitle: the prp19 wd40 domain contains a conserved protein interaction region2 essential for its function. 75 d1vyhc1 not modelled 99.6 10 Fold:7-bladed beta-propeller Superfamily:WD40 repeat-like Family:WD40-repeat 76 c3ei3B_ not modelled 99.6 15 PDB header:dna binding protein Chain: B: PDB Molecule:dna damage-binding protein 2; PDBTitle: structure of the hsddb1-drddb2 complex 77 d2ovrb2 not modelled 99.6 13 Fold:7-bladed beta-propeller Superfamily:WD40 repeat-like Family:WD40-repeat 78 c3ei4D_ not modelled 99.6 9 PDB header:dna binding protein Chain: D: PDB Molecule:dna damage-binding protein 2; PDBTitle: structure of the hsddb1-hsddb2 complex 79 d1nr0a1 not modelled 99.6 13 Fold:7-bladed beta-propeller Superfamily:WD40 repeat-like Family:WD40-repeat 80 c1vyhT_ not modelled 99.6 10 PDB header:hydrolase Chain: T: PDB Molecule:platelet-activating factor acetylhydrolase ib PDBTitle: paf-ah holoenzyme: lis1/alfa2 81 c3vh0C_ not modelled 99.6 15 PDB header:protein binding/dna Chain: C: PDB Molecule:uncharacterized protein ynce; PDBTitle: crystal structure of e. coli ynce complexed with dna 82 c3eg6A_ not modelled 99.6 20 PDB header:protein binding Chain: A: PDB Molecule:wd repeat-containing protein 5; PDBTitle: structure of wdr5 bound to mll1 peptide 83 c2xznR_ not modelled 99.6 19 PDB header:ribosome Chain: R: PDB Molecule:rack1; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2 84 c3fm0A_ not modelled 99.6 17 PDB header:biosynthetic protein Chain: A: PDB Molecule:protein ciao1; PDBTitle: crystal structure of wd40 protein ciao1 85 d2dg1a1 not modelled 99.6 13 Fold:6-bladed beta-propeller Superfamily:Calcium-dependent phosphotriesterase Family:SGL-like 86 c2pm9A_ not modelled 99.5 10 PDB header:protein transport Chain: A: PDB Molecule:protein transport protein sec31; PDBTitle: crystal structure of yeast sec13/31 vertex element of the2 copii vesicular coat 87 c3mmyE_ not modelled 99.5 10 PDB header:nuclear protein Chain: E: PDB Molecule:mrna export factor; PDBTitle: structural and functional analysis of the interaction between the2 nucleoporin nup98 and the mrna export factor rae1 88 c3acpA_ not modelled 99.5 12 PDB header:chaperone Chain: A: PDB Molecule:wd repeat-containing protein ygl004c; PDBTitle: crystal structure of yeast rpn14, a chaperone of the 19s regulatory2 particle of the proteasome 89 d1nr0a2 not modelled 99.5 14 Fold:7-bladed beta-propeller Superfamily:WD40 repeat-like Family:WD40-repeat 90 d1erja_ not modelled 99.5 17 Fold:7-bladed beta-propeller Superfamily:WD40 repeat-like Family:WD40-repeat 91 d1jofa_ not modelled 99.5 12 Fold:7-bladed beta-propeller Superfamily:3-carboxy-cis,cis-mucoante lactonizing enzyme Family:3-carboxy-cis,cis-mucoante lactonizing enzyme 92 c2iwaA_ not modelled 99.5 10 PDB header:transferase Chain: A: PDB Molecule:glutamine cyclotransferase; PDBTitle: unbound glutaminyl cyclotransferase from carica papaya. 93 c4a11B_ not modelled 99.5 11 PDB header:dna binding protein Chain: B: PDB Molecule:dna excision repair protein ercc-8; PDBTitle: structure of the hsddb1-hscsa complex 94 c3dwlH_ not modelled 99.5 12 PDB header:structural protein Chain: H: PDB Molecule:actin-related protein 2/3 complex subunit 1; PDBTitle: crystal structure of fission yeast arp2/3 complex lacking the arp22 subunit 95 d1tl2a_ not modelled 99.5 15 Fold:5-bladed beta-propeller Superfamily:Tachylectin-2 Family:Tachylectin-2 96 d1nexb2 not modelled 99.5 9 Fold:7-bladed beta-propeller Superfamily:WD40 repeat-like Family:WD40-repeat 97 c3sbrF_ not modelled 99.5 8 PDB header:oxidoreductase Chain: F: PDB Molecule:nitrous-oxide reductase; PDBTitle: pseudomonas stutzeri nitrous oxide reductase, p1 crystal form with2 substrate 98 c3frxB_ not modelled 99.5 15 PDB header:signaling protein Chain: B: PDB Molecule:guanine nucleotide-binding protein subunit beta- PDBTitle: crystal structure of the yeast orthologue of rack1, asc1. 99 c3qqzA_ not modelled 99.5 13 PDB header:metal binding protein Chain: A: PDB Molecule:putative uncharacterized protein yjik; PDBTitle: crystal structure of the c-terminal domain of the yjik protein from2 escherichia coli cft073 100 c3ow8A_ not modelled 99.4 15 PDB header:transcription Chain: A: PDB Molecule:wd repeat-containing protein 61; PDBTitle: crystal structure of the wd repeat-containing protein 61 101 c3bg1E_ not modelled 99.4 11 PDB header:protein transport, hydrolase Chain: E: PDB Molecule:protein sec13 homolog; PDBTitle: architecture of a coat for the nuclear pore membrane 102 c2pm7B_ not modelled 99.4 12 PDB header:protein transport Chain: B: PDB Molecule:protein transport protein sec13; PDBTitle: crystal structure of yeast sec13/31 edge element of the2 copii vesicular coat, selenomethionine version 103 c3cfvA_ not modelled 99.4 10 PDB header:histone/chaperone Chain: A: PDB Molecule:histone-binding protein rbbp7; PDBTitle: structural basis of the interaction of rbap46/rbap48 with2 histone h4 104 d1sq9a_ not modelled 99.4 12 Fold:7-bladed beta-propeller Superfamily:WD40 repeat-like Family:WD40-repeat 105 c3dr2A_ not modelled 99.4 14 PDB header:hydrolase Chain: A: PDB Molecule:exported gluconolactonase; PDBTitle: structural and functional analyses of xc5397 from2 xanthomonas campestris: a gluconolactonase important in3 glucose secondary metabolic pathways 106 c3i2nA_ not modelled 99.4 17 PDB header:transcription Chain: A: PDB Molecule:wd repeat-containing protein 92; PDBTitle: crystal structure of wd40 repeats protein wdr92 107 d2ghsa1 not modelled 99.4 20 Fold:6-bladed beta-propeller Superfamily:Calcium-dependent phosphotriesterase Family:SGL-like 108 c2ghsA_ not modelled 99.4 20 PDB header:calcium-binding protein Chain: A: PDB Molecule:agr_c_1268p; PDBTitle: crystal structure of a calcium-binding protein, regucalcin2 (agr_c_1268) from agrobacterium tumefaciens str. c58 at 1.55 a3 resolution 109 c3s25A_ not modelled 99.4 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical 7-bladed beta-propeller-like protein; PDBTitle: crystal structure of a hypothetical 7-bladed beta-propeller-like2 protein (eubrec_1955) from eubacterium rectale atcc 33656 at 1.88 a3 resolution 110 c3greA_ not modelled 99.4 15 PDB header:signaling protein,protein binding Chain: A: PDB Molecule:serine/threonine-protein kinase vps15; PDBTitle: crystal structure of saccharomyces cerevisiae vps15 wd2 repeat domain 111 c3dw8B_ not modelled 99.4 13 PDB header:hydrolase/hydrolase inhibitor Chain: B: PDB Molecule:serine/threonine-protein phosphatase 2a 55 kda regulatory PDBTitle: structure of a protein phosphatase 2a holoenzyme with b55 subunit 112 c2qxvA_ not modelled 99.4 14 PDB header:gene regulation Chain: A: PDB Molecule:embryonic ectoderm development; PDBTitle: structural basis of ezh2 recognition by eed 113 c3e5zA_ not modelled 99.4 12 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative gluconolactonase; PDBTitle: x-ray structure of the putative gluconolactonase in protein family2 pf08450. northeast structural genomics consortium target drr130. 114 c3eweC_ not modelled 99.4 11 PDB header:protein transport,structural protein Chain: C: PDB Molecule:nucleoporin seh1; PDBTitle: crystal structure of the nup85/seh1 complex 115 c3odtB_ not modelled 99.4 13 PDB header:nuclear protein Chain: B: PDB Molecule:protein doa1; PDBTitle: crystal structure of wd40 beta propeller domain of doa1 116 d1pgua1 not modelled 99.3 9 Fold:7-bladed beta-propeller Superfamily:WD40 repeat-like Family:WD40-repeat 117 c3jzhA_ not modelled 99.3 12 PDB header:gene regulation Chain: A: PDB Molecule:polycomb protein eed; PDBTitle: eed-h3k79me3 118 c2zkqa_ not modelled 99.3 13 PDB header:ribosomal protein/rna Chain: A: PDB Molecule:18s ribosomal rna; PDBTitle: structure of a mammalian ribosomal 40s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 119 d1k8kc_ not modelled 99.3 11 Fold:7-bladed beta-propeller Superfamily:WD40 repeat-like Family:WD40-repeat 120 c3dsmA_ not modelled 99.3 7 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein bacuni_02894; PDBTitle: crystal structure of the surface layer protein bacuni_02894 from2 bacteroides uniformis, northeast structural genomics consortium3 target btr193d.

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0