Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP42592
DateThu Jan 5 12:01:39 GMT 2012
Unique Job ID34cc4bd31f07a4dc

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c3c67B_
Top template information
PDB header:hydrolase
Chain: B: PDB Molecule:uncharacterized protein ygjk;
PDBTitle: escherichia coli k12 ygjk in a complexed with glucose
Confidence and coverage
Confidence:100.0% Coverage: 97%
758 residues ( 97% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MKIKTILTPVTCALLISFSAHAANADNYKNVINRTGAPQYMKDYDYDDHQRFNPFFDLGA
Secondary structure 
SS confidence 
Disorder  ????
??????
?
?
Disorder confidence 
 
   .........70.........80.........90.........100.........110.........120
Sequence  WHGHLLPDGPNTMGGFPGVALLTEEYINFMASNFDRLTVWQDGKKVDFTLEAYSIPGALV
Secondary structure 
SS confidence 
Disorder 
??
????
Disorder confidence 
 
   .........130.........140.........150.........160.........170.........180
Sequence  QKLTAKDVQVEMTLRFATPRTSLLETKITSNKPLDLVWDGELLEKLEAKEGKPLSDKTIA
Secondary structure 
SS confidence 
Disorder 
?
???
????
Disorder confidence 
 
   .........190.........200.........210.........220.........230.........240
Sequence  GEYPDYQRKISATRDGLKVTFGKVRATWDLLTSGESEYQVHKSLPVQTEINGNRFTSKAH
Secondary structure 
SS confidence 
Disorder 
???
?
???
?
???
??????????
Disorder confidence 
 
   .........250.........260.........270.........280.........290.........300
Sequence  INGSTTLYTTYSHLLTAQEVSKEQMQIRDILARPAFYLTASQQRWEEYLKKGLTNPDATP
Secondary structure 
SS confidence 
Disorder  ?
??
????????
???????
Disorder confidence 
 
   .........310.........320.........330.........340.........350.........360
Sequence  EQTRVAVKAIETLNGNWRSPGGAVKFNTVTPSVTGRWFSGNQTWPWDTWKQAFAMAHFNP
Secondary structure 
SS confidence 
Disorder 
?
?
Disorder confidence 
 
   .........370.........380.........390.........400.........410.........420
Sequence  DIAKENIRAVFSWQIQPGDSVRPQDVGFVPDLIAWNLSPERGGDGGNWNERNTKPSLAAW
Secondary structure 
SS confidence 
Disorder 
?
??????
Disorder confidence 
 
   .........430.........440.........450.........460.........470.........480
Sequence  SVMEVYNVTQDKTWVAEMYPKLVAYHDWWLRNRDHNGNGVPEYGATRDKAHNTESGEMLF
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........490.........500.........510.........520.........530.........540
Sequence  TVKKGDKEETQSGLNNYARVVEKGQYDSLEIPAQVAASWESGRDDAAVFGFIDKEQLDKY
Secondary structure 
SS confidence 
Disorder  ?
?
Disorder confidence 
 
   .........550.........560.........570.........580.........590.........600
Sequence  VANGGKRSDWTVKFAENRSQDGTLLGYSLLQESVDQASYMYSDNHYLAEMATILGKPEEA
Secondary structure 
SS confidence 
Disorder 
?
?
Disorder confidence 
 
   .........610.........620.........630.........640.........650.........660
Sequence  KRYRQLAQQLADYINTCMFDPTTQFYYDVRIEDKPLANGCAGKPIVERGKGPEGWSPLFN
Secondary structure 
SS confidence 
Disorder 
??
?
???
?
?
Disorder confidence 
 
   .........670.........680.........690.........700.........710.........720
Sequence  GAATQANADAVVKVMLDPKEFNTFVPLGTAALTNPAFGADIYWRGRVWVDQFWFGLKGME
Secondary structure 
SS confidence 
Disorder 
??
????????
Disorder confidence 
 
   .........730.........740.........750.........760.........770.........780
Sequence  RYGYRDDALKLADTFFRHAKGLTADGPIQENYNPLTGAQQGAPNFSWSAAHLYMLYNDFF
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   ...
Sequence  RKQ
Secondary structure 
SS confidence 
Disorder  ???
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 3c67 chain B

3D model

Region: 25 - 782
Aligned: 758
Modelled: 758
Confidence: 100.0%
Identity: 100%
PDB header:hydrolase
Chain: B: PDB Molecule:uncharacterized protein ygjk;
PDBTitle: escherichia coli k12 ygjk in a complexed with glucose

Phyre2

PDB 2jg0 chain A domain 1

3D model

Region: 324 - 783
Aligned: 385
Modelled: 403
Confidence: 100.0%
Identity: 16%
Fold: alpha/alpha toroid
Superfamily: Six-hairpin glycosidases
Family: Trehalase-like

Phyre2

PDB 2jg0 chain A

3D model

Region: 324 - 783
Aligned: 385
Modelled: 404
Confidence: 100.0%
Identity: 16%
PDB header:hydrolase
Chain: A: PDB Molecule:periplasmic trehalase;
PDBTitle: family 37 trehalase from escherichia coli in complex with 1-2 thiatrehazolin

Phyre2

PDB 2z07 chain A

3D model

Region: 305 - 777
Aligned: 382
Modelled: 414
Confidence: 100.0%
Identity: 24%
PDB header:hydrolase
Chain: A: PDB Molecule:putative uncharacterized protein ttha0978;
PDBTitle: crystal structure of uncharacterized conserved protein from2 thermus thermophilus hb8

Phyre2

PDB 1v7w chain A

3D model

Region: 116 - 781
Aligned: 544
Modelled: 562
Confidence: 100.0%
Identity: 14%
PDB header:transferase
Chain: A: PDB Molecule:chitobiose phosphorylase;
PDBTitle: crystal structure of vibrio proteolyticus chitobiose phosphorylase in2 complex with glcnac

Phyre2

PDB 2cqt chain A

3D model

Region: 116 - 783
Aligned: 563
Modelled: 593
Confidence: 100.0%
Identity: 17%
PDB header:transferase
Chain: A: PDB Molecule:cellobiose phosphorylase;
PDBTitle: crystal structure of cellvibrio gilvus cellobiose phosphorylase2 crystallized from sodium/potassium phosphate

Phyre2

PDB 1v7w chain A domain 1

3D model

Region: 261 - 780
Aligned: 401
Modelled: 416
Confidence: 100.0%
Identity: 16%
Fold: alpha/alpha toroid
Superfamily: Six-hairpin glycosidases
Family: Glycosyltransferase family 36 C-terminal domain

Phyre2

PDB 1lf6 chain A domain 1

3D model

Region: 297 - 783
Aligned: 350
Modelled: 375
Confidence: 100.0%
Identity: 16%
Fold: alpha/alpha toroid
Superfamily: Six-hairpin glycosidases
Family: Bacterial glucoamylase C-terminal domain-like

Phyre2

PDB 2okx chain B

3D model

Region: 298 - 783
Aligned: 328
Modelled: 364
Confidence: 99.9%
Identity: 18%
PDB header:hydrolase
Chain: B: PDB Molecule:rhamnosidase b;
PDBTitle: crystal structure of gh78 family rhamnosidase of bacillus sp. gl1 at2 1.9 a

Phyre2

PDB 1lf6 chain A

3D model

Region: 113 - 778
Aligned: 513
Modelled: 544
Confidence: 99.9%
Identity: 17%
PDB header:hydrolase
Chain: A: PDB Molecule:glucoamylase;
PDBTitle: crystal structure of bacterial glucoamylase

Phyre2

PDB 3cih chain A

3D model

Region: 348 - 783
Aligned: 282
Modelled: 304
Confidence: 99.9%
Identity: 18%
PDB header:hydrolase
Chain: A: PDB Molecule:putative alpha-rhamnosidase;
PDBTitle: crystal structure of a putative alpha-rhamnosidase from2 bacteroides thetaiotaomicron

Phyre2

PDB 1ulv chain A domain 1

3D model

Region: 299 - 778
Aligned: 346
Modelled: 376
Confidence: 99.8%
Identity: 16%
Fold: alpha/alpha toroid
Superfamily: Six-hairpin glycosidases
Family: Bacterial glucoamylase C-terminal domain-like

Phyre2

PDB 1gai chain A

3D model

Region: 300 - 777
Aligned: 353
Modelled: 367
Confidence: 99.7%
Identity: 18%
Fold: alpha/alpha toroid
Superfamily: Six-hairpin glycosidases
Family: Glucoamylase

Phyre2

PDB 1ug9 chain A

3D model

Region: 118 - 779
Aligned: 516
Modelled: 544
Confidence: 99.7%
Identity: 19%
PDB header:hydrolase
Chain: A: PDB Molecule:glucodextranase;
PDBTitle: crystal structure of glucodextranase from arthrobacter globiformis i42

Phyre2

PDB 2fba chain A domain 1

3D model

Region: 300 - 777
Aligned: 366
Modelled: 371
Confidence: 99.7%
Identity: 17%
Fold: alpha/alpha toroid
Superfamily: Six-hairpin glycosidases
Family: Glucoamylase

Phyre2

PDB 2vn4 chain A

3D model

Region: 300 - 778
Aligned: 357
Modelled: 368
Confidence: 99.6%
Identity: 18%
PDB header:hydrolase
Chain: A: PDB Molecule:glucoamylase;
PDBTitle: glycoside hydrolase family 15 glucoamylase from hypocrea2 jecorina

Phyre2

PDB 3qsp chain B

3D model

Region: 343 - 783
Aligned: 329
Modelled: 345
Confidence: 98.9%
Identity: 13%
PDB header:hydrolase
Chain: B: PDB Molecule:putative uncharacterized protein;
PDBTitle: analysis of a new family of widely distributed metal-independent alpha2 mannosidases provides unique insight into the processing of n-linked3 glycans, streptococcus pneumoniae sp_2144 non-productive substrate4 complex with alpha-1,6-mannobiose

Phyre2

PDB 2eac chain B

3D model

Region: 117 - 776
Aligned: 521
Modelled: 541
Confidence: 98.9%
Identity: 17%
PDB header:hydrolase
Chain: B: PDB Molecule:alpha-fucosidase;
PDBTitle: crystal structure of 1,2-a-l-fucosidase from2 bifidobacterium bifidum in complex with3 deoxyfuconojirimycin

Phyre2

PDB 2ww1 chain B

3D model

Region: 14 - 634
Aligned: 456
Modelled: 478
Confidence: 98.7%
Identity: 17%
PDB header:hydrolase
Chain: B: PDB Molecule:putative alpha-1,2-mannosidase;
PDBTitle: structure of the family gh92 inverting mannosidase bt39902 from bacteroides thetaiotaomicron vpi-5482 in complex with3 thiomannobioside

Phyre2

PDB 2nvp chain A domain 1

3D model

Region: 343 - 783
Aligned: 331
Modelled: 347
Confidence: 98.7%
Identity: 15%
Fold: alpha/alpha toroid
Superfamily: Six-hairpin glycosidases
Family: CPF0428-like

Phyre2
1
c3c67B_
2
d2jg0a1
3
c2jg0A_
4
c2z07A_
5
c1v7wA_
6
c2cqtA_
7
d1v7wa1
8
d1lf6a1
9
c2okxB_
10
c1lf6A_
11
c3cihA_
12
d1ulva1
13
d1gaia_
14
c1ug9A_
15
d2fbaa1
16
c2vn4A_
17
c3qspB_
18
c2eacB_
19
c2ww1B_
20
d2nvpa1
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
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44
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46
47
48
49
50
51
52
53
54
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56
57
58
59
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61
62
63
64
65
66
67
68
69
70
71
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73
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75
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99



Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3c67B_
100.0 100 PDB header:hydrolase
Chain: B: PDB Molecule:uncharacterized protein ygjk;
PDBTitle: escherichia coli k12 ygjk in a complexed with glucose
2d2jg0a1
100.0 16 Fold:alpha/alpha toroid
Superfamily:Six-hairpin glycosidases
Family:Trehalase-like
3c2jg0A_
100.0 16 PDB header:hydrolase
Chain: A: PDB Molecule:periplasmic trehalase;
PDBTitle: family 37 trehalase from escherichia coli in complex with 1-2 thiatrehazolin
4c2z07A_
100.0 24 PDB header:hydrolase
Chain: A: PDB Molecule:putative uncharacterized protein ttha0978;
PDBTitle: crystal structure of uncharacterized conserved protein from2 thermus thermophilus hb8
5c1v7wA_
100.0 14 PDB header:transferase
Chain: A: PDB Molecule:chitobiose phosphorylase;
PDBTitle: crystal structure of vibrio proteolyticus chitobiose phosphorylase in2 complex with glcnac
6c2cqtA_
100.0 17 PDB header:transferase
Chain: A: PDB Molecule:cellobiose phosphorylase;
PDBTitle: crystal structure of cellvibrio gilvus cellobiose phosphorylase2 crystallized from sodium/potassium phosphate
7d1v7wa1
100.0 16 Fold:alpha/alpha toroid
Superfamily:Six-hairpin glycosidases
Family:Glycosyltransferase family 36 C-terminal domain
8d1lf6a1
100.0 16 Fold:alpha/alpha toroid
Superfamily:Six-hairpin glycosidases
Family:Bacterial glucoamylase C-terminal domain-like
9c2okxB_
99.9 18 PDB header:hydrolase
Chain: B: PDB Molecule:rhamnosidase b;
PDBTitle: crystal structure of gh78 family rhamnosidase of bacillus sp. gl1 at2 1.9 a
10c1lf6A_
99.9 17 PDB header:hydrolase
Chain: A: PDB Molecule:glucoamylase;
PDBTitle: crystal structure of bacterial glucoamylase
11c3cihA_
99.9 18 PDB header:hydrolase
Chain: A: PDB Molecule:putative alpha-rhamnosidase;
PDBTitle: crystal structure of a putative alpha-rhamnosidase from2 bacteroides thetaiotaomicron
12d1ulva1
99.8 16 Fold:alpha/alpha toroid
Superfamily:Six-hairpin glycosidases
Family:Bacterial glucoamylase C-terminal domain-like
13d1gaia_
99.7 18 Fold:alpha/alpha toroid
Superfamily:Six-hairpin glycosidases
Family:Glucoamylase
14c1ug9A_
99.7 19 PDB header:hydrolase
Chain: A: PDB Molecule:glucodextranase;
PDBTitle: crystal structure of glucodextranase from arthrobacter globiformis i42
15d2fbaa1
99.7 17 Fold:alpha/alpha toroid
Superfamily:Six-hairpin glycosidases
Family:Glucoamylase
16c2vn4A_
99.6 18 PDB header:hydrolase
Chain: A: PDB Molecule:glucoamylase;
PDBTitle: glycoside hydrolase family 15 glucoamylase from hypocrea2 jecorina
17c3qspB_
98.9 13 PDB header:hydrolase
Chain: B: PDB Molecule:putative uncharacterized protein;
PDBTitle: analysis of a new family of widely distributed metal-independent alpha2 mannosidases provides unique insight into the processing of n-linked3 glycans, streptococcus pneumoniae sp_2144 non-productive substrate4 complex with alpha-1,6-mannobiose
18c2eacB_
98.9 17 PDB header:hydrolase
Chain: B: PDB Molecule:alpha-fucosidase;
PDBTitle: crystal structure of 1,2-a-l-fucosidase from2 bifidobacterium bifidum in complex with3 deoxyfuconojirimycin
19c2ww1B_
98.7 17 PDB header:hydrolase
Chain: B: PDB Molecule:putative alpha-1,2-mannosidase;
PDBTitle: structure of the family gh92 inverting mannosidase bt39902 from bacteroides thetaiotaomicron vpi-5482 in complex with3 thiomannobioside
20d2nvpa1
98.7 15 Fold:alpha/alpha toroid
Superfamily:Six-hairpin glycosidases
Family:CPF0428-like
21d1h54a1
not modelled 98.7 13 Fold:alpha/alpha toroid
Superfamily:Six-hairpin glycosidases
Family:Glycosyltransferase family 36 C-terminal domain
22c2wvyA_
not modelled 98.6 16 PDB header:hydrolase
Chain: A: PDB Molecule:alpha-1,2-mannosidase;
PDBTitle: structure of the family gh92 inverting mannosidase bt21992 from bacteroides thetaiotaomicron vpi-5482
23c2p0vA_
not modelled 98.6 19 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein bt3781;
PDBTitle: crystal structure of bt3781 protein from bacteroides2 thetaiotaomicron, northeast structural genomics target3 btr58
24d2p0va1
not modelled 98.6 19 Fold:alpha/alpha toroid
Superfamily:Six-hairpin glycosidases
Family:CPF0428-like
25c1h54B_
not modelled 98.2 15 PDB header:hydrolase
Chain: B: PDB Molecule:maltose phosphorylase;
PDBTitle: maltose phosphorylase from lactobacillus brevis
26c2rdyB_
not modelled 98.2 13 PDB header:hydrolase
Chain: B: PDB Molecule:bh0842 protein;
PDBTitle: crystal structure of a putative glycoside hydrolase family2 protein from bacillus halodurans
27c3gt5A_
not modelled 96.3 12 PDB header:isomerase
Chain: A: PDB Molecule:n-acetylglucosamine 2-epimerase;
PDBTitle: crystal structure of an n-acetylglucosamine 2-epimerase family protein2 from xylella fastidiosa
28d2afaa1
not modelled 95.1 15 Fold:alpha/alpha toroid
Superfamily:Six-hairpin glycosidases
Family:N-acylglucosamine (NAG) epimerase
29d1fp3a_
not modelled 94.1 16 Fold:alpha/alpha toroid
Superfamily:Six-hairpin glycosidases
Family:N-acylglucosamine (NAG) epimerase
30d2d5ja1
not modelled 91.1 16 Fold:alpha/alpha toroid
Superfamily:Six-hairpin glycosidases
Family:Glycosyl Hydrolase Family 88
31c2zzrA_
not modelled 87.7 15 PDB header:hydrolase
Chain: A: PDB Molecule:unsaturated glucuronyl hydrolase;
PDBTitle: crystal structure of unsaturated glucuronyl hydrolase from2 streptcoccus agalactiae
32c1ut9A_
not modelled 70.3 14 PDB header:hydrolase
Chain: A: PDB Molecule:cellulose 1,4-beta-cellobiosidase;
PDBTitle: structural basis for the exocellulase activity of the2 cellobiohydrolase cbha from c. thermocellum
33c3k11A_
not modelled 70.1 11 PDB header:hydrolase
Chain: A: PDB Molecule:putative glycosyl hydrolase;
PDBTitle: crystal structure of putative glycosyl hydrolase (np_813087.1) from2 bacteroides thetaiotaomicron vpi-5482 at 1.80 a resolution
34d1ut9a1
not modelled 65.6 14 Fold:alpha/alpha toroid
Superfamily:Six-hairpin glycosidases
Family:Cellulases catalytic domain
35d1nc5a_
not modelled 62.2 11 Fold:alpha/alpha toroid
Superfamily:Six-hairpin glycosidases
Family:Hypothetical protein YteR
36c1ga2A_
not modelled 61.2 19 PDB header:hydrolase
Chain: A: PDB Molecule:endoglucanase 9g;
PDBTitle: the crystal structure of endoglucanase 9g from clostridium2 cellulolyticum complexed with cellobiose
37d1ia6a_
not modelled 60.6 14 Fold:alpha/alpha toroid
Superfamily:Six-hairpin glycosidases
Family:Cellulases catalytic domain
38c1clcA_
not modelled 55.5 15 PDB header:glycosyl hydrolase
Chain: A: PDB Molecule:endoglucanase celd; ec: 3.2.1.4;
PDBTitle: three-dimensional structure of endoglucanase d at 1.92 angstroms resolution
39c3pmmA_
not modelled 54.7 11 PDB header:hydrolase
Chain: A: PDB Molecule:putative cytoplasmic protein;
PDBTitle: the crystal structure of a possible member of gh105 family from2 klebsiella pneumoniae subsp. pneumoniae mgh 78578
40d1clca1
not modelled 52.7 12 Fold:alpha/alpha toroid
Superfamily:Six-hairpin glycosidases
Family:Cellulases catalytic domain
41d1g87a1
not modelled 50.1 19 Fold:alpha/alpha toroid
Superfamily:Six-hairpin glycosidases
Family:Cellulases catalytic domain
42c2xfgA_
not modelled 43.6 14 PDB header:hydrolase/sugar binding protein
Chain: A: PDB Molecule:endoglucanase 1;
PDBTitle: reassembly and co-crystallization of a family 9 processive2 endoglucanase from separately expressed gh9 and cbm3c3 modules
43c3gzkA_
not modelled 40.5 17 PDB header:hydrolase
Chain: A: PDB Molecule:cellulase;
PDBTitle: structure of a. acidocaldarius cellulase cela
44c3nrdB_
not modelled 30.5 22 PDB header:nucleotide binding protein
Chain: B: PDB Molecule:histidine triad (hit) protein;
PDBTitle: crystal structure of a histidine triad (hit) protein (smc02904) from2 sinorhizobium meliloti 1021 at 2.06 a resolution
45d1tf4a1
not modelled 29.2 12 Fold:alpha/alpha toroid
Superfamily:Six-hairpin glycosidases
Family:Cellulases catalytic domain
46d1ks8a_
not modelled 27.4 10 Fold:alpha/alpha toroid
Superfamily:Six-hairpin glycosidases
Family:Cellulases catalytic domain
47c1x9dA_
not modelled 25.3 17 PDB header:hydrolase
Chain: A: PDB Molecule:endoplasmic reticulum mannosyl-oligosaccharide 1,
PDBTitle: crystal structure of human class i alpha-1,2-mannosidase in2 complex with thio-disaccharide substrate analogue
48d1x9da1
not modelled 25.3 17 Fold:alpha/alpha toroid
Superfamily:Seven-hairpin glycosidases
Family:Class I alpha-1;2-mannosidase, catalytic domain
49d1of5b_
not modelled 22.0 19 Fold:Cystatin-like
Superfamily:NTF2-like
Family:NTF2-like
50d2h8pc1
not modelled 17.6 7 Fold:Voltage-gated potassium channels
Superfamily:Voltage-gated potassium channels
Family:Voltage-gated potassium channels
51d2pifa1
not modelled 16.3 15 Fold:PSTPO5379-like
Superfamily:PSTPO5379-like
Family:PSTPO5379-like
52c3oheA_
not modelled 16.0 20 PDB header:hydrolase
Chain: A: PDB Molecule:histidine triad (hit) protein;
PDBTitle: crystal structure of a histidine triad protein (maqu_1709) from2 marinobacter aquaeolei vt8 at 1.20 a resolution
53c3k7xA_
not modelled 15.4 14 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:lin0763 protein;
PDBTitle: crystal structure of the lin0763 protein from listeria2 innocua. northeast structural genomics consortium target3 lkr23.
54c2lbbA_
not modelled 12.7 27 PDB header:protein binding
Chain: A: PDB Molecule:acyl coa binding protein;
PDBTitle: solution structure of acyl coa binding protein from babesia bovis t2bo
55c1xc0A_
not modelled 12.4 41 PDB header:signaling protein
Chain: A: PDB Molecule:pardaxin p-4;
PDBTitle: twenty lowest energy structures of pa4 by solution nmr
56d1nzpa_
not modelled 12.3 15 Fold:SAM domain-like
Superfamily:DNA polymerase beta, N-terminal domain-like
Family:DNA polymerase beta, N-terminal domain-like
57c3sohB_
not modelled 11.2 20 PDB header:motor protein
Chain: B: PDB Molecule:flagellar motor switch protein flig;
PDBTitle: architecture of the flagellar rotor
58d1i39a_
not modelled 11.1 13 Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:Ribonuclease H
59c1i3aA_
not modelled 11.1 13 PDB header:hydrolase
Chain: A: PDB Molecule:ribonuclease hii;
PDBTitle: rnase hii from archaeoglobus fulgidus with cobalt hexammine2 chloride
60d1gwya_
not modelled 10.9 11 Fold:Cytolysin/lectin
Superfamily:Cytolysin/lectin
Family:Anemone pore-forming cytolysin
61c2xtdB_
not modelled 10.6 8 PDB header:transcription
Chain: B: PDB Molecule:tbl1 f-box-like/wd repeat-containing protein tbl1x;
PDBTitle: structure of the tbl1 tetramerisation domain
62c3db3A_
not modelled 10.2 43 PDB header:ligase
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase uhrf1;
PDBTitle: crystal structure of the tandem tudor domains of the e3 ubiquitin-2 protein ligase uhrf1 in complex with trimethylated histone h3-k93 peptide
63c2xteH_
not modelled 9.8 8 PDB header:transcription
Chain: H: PDB Molecule:f-box-like/wd repeat-containing protein tbl1x;
PDBTitle: structure of the tbl1 tetramerisation domain
64c2r7aC_
not modelled 9.5 13 PDB header:transport protein
Chain: C: PDB Molecule:bacterial heme binding protein;
PDBTitle: crystal structure of a periplasmic heme binding protein2 from shigella dysenteriae
65c3kioA_
not modelled 9.4 13 PDB header:hydrolase
Chain: A: PDB Molecule:ribonuclease h2 subunit a;
PDBTitle: mouse rnase h2 complex
66c2axtc_
not modelled 9.0 16 PDB header:electron transport
Chain: C: PDB Molecule:photosystem ii cp43 protein;
PDBTitle: crystal structure of photosystem ii from thermosynechococcus elongatus
67d2axtc1
not modelled 9.0 16 Fold:Photosystem II antenna protein-like
Superfamily:Photosystem II antenna protein-like
Family:Photosystem II antenna protein-like
68d1iwpa_
not modelled 8.9 16 Fold:TIM beta/alpha-barrel
Superfamily:Cobalamin (vitamin B12)-dependent enzymes
Family:Diol dehydratase, alpha subunit
69d1jmsa1
not modelled 8.9 10 Fold:SAM domain-like
Superfamily:DNA polymerase beta, N-terminal domain-like
Family:DNA polymerase beta, N-terminal domain-like
70c2jw1A_
not modelled 8.8 21 PDB header:membrane protein
Chain: A: PDB Molecule:lipoprotein mxim;
PDBTitle: structural characterization of the type iii pilotin-2 secretin interaction in shigella flexneri by nmr3 spectroscopy
71c3i4sB_
not modelled 8.8 14 PDB header:hydrolase
Chain: B: PDB Molecule:histidine triad protein;
PDBTitle: crystal structure of histidine triad protein blr8122 from2 bradyrhizobium japonicum
72d3boja1
not modelled 8.6 20 Fold:CdCA1 repeat-like
Superfamily:CdCA1 repeat-like
Family:CdCA1 repeat-like
73d1ekea_
not modelled 8.5 13 Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:Ribonuclease H
74c2qx5B_
not modelled 8.4 21 PDB header:transport protein
Chain: B: PDB Molecule:nucleoporin nic96;
PDBTitle: structure of nucleoporin nic96
75d1uaxa_
not modelled 8.4 13 Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:Ribonuclease H
76c2vixB_
not modelled 8.3 14 PDB header:transport protein
Chain: B: PDB Molecule:protein mxic;
PDBTitle: methylated shigella flexneri mxic
77c2d0bA_
not modelled 8.2 13 PDB header:hydrolase
Chain: A: PDB Molecule:ribonuclease hiii;
PDBTitle: crystal structure of bst-rnase hiii in complex with mg2+
78d3boea1
not modelled 8.2 23 Fold:CdCA1 repeat-like
Superfamily:CdCA1 repeat-like
Family:CdCA1 repeat-like
79c3i24B_
not modelled 8.1 43 PDB header:hydrolase
Chain: B: PDB Molecule:hit family hydrolase;
PDBTitle: crystal structure of a hit family hydrolase protein from2 vibrio fischeri. northeast structural genomics consortium3 target id vfr176
80d1w8ia_
not modelled 8.0 16 Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
81d2pbea2
not modelled 7.9 26 Fold:Nucleotidyltransferase
Superfamily:Nucleotidyltransferase
Family:AadK N-terminal domain-like
82c2r2vB_
not modelled 7.6 36 PDB header:de novo protein
Chain: B: PDB Molecule:gcn4 leucine zipper;
PDBTitle: sequence determinants of the topology of the lac repressor2 tetrameric coiled coil
83d1io2a_
not modelled 7.6 13 Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:Ribonuclease H
84c1ichA_
not modelled 7.3 0 PDB header:apoptosis
Chain: A: PDB Molecule:tumor necrosis factor receptor-1;
PDBTitle: solution structure of the tumor necrosis factor receptor-12 death domain
85d1icha_
not modelled 7.3 0 Fold:DEATH domain
Superfamily:DEATH domain
Family:DEATH domain, DD
86d1h2vc2
not modelled 7.2 14 Fold:alpha-alpha superhelix
Superfamily:ARM repeat
Family:MIF4G domain-like
87c3igmA_
not modelled 7.0 16 PDB header:transcription/dna
Chain: A: PDB Molecule:pf14_0633 protein;
PDBTitle: a 2.2a crystal structure of the ap2 domain of pf14_0633 from p.2 falciparum, bound as a domain-swapped dimer to its cognate dna
88d2bcqa1
not modelled 7.0 17 Fold:SAM domain-like
Superfamily:DNA polymerase beta, N-terminal domain-like
Family:DNA polymerase beta, N-terminal domain-like
89c3fgrB_
not modelled 6.8 32 PDB header:hydrolase
Chain: B: PDB Molecule:putative phospholipase b-like 2 40 kda form;
PDBTitle: two chain form of the 66.3 kda protein at 1.8 angstroem
90c2fqzC_
not modelled 6.7 13 PDB header:hydrolase/dna
Chain: C: PDB Molecule:r.ecl18ki;
PDBTitle: metal-depleted ecl18ki in complex with uncleaved dna
91c3hwjA_
not modelled 6.7 18 PDB header:ligase
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase mycbp2;
PDBTitle: crystal structure of the second phr domain of mouse myc-2 binding protein 2 (mycbp-2)
92d2d5ua1
not modelled 6.6 10 Fold:PUG domain-like
Superfamily:PUG domain-like
Family:PUG domain
93c2bldD_
not modelled 6.5 17 PDB header:virus
Chain: D: PDB Molecule:penton protein;
PDBTitle: the quasi-atomic model of human adenovirus type 52 capsid (part 1)
94c3renB_
not modelled 6.5 18 PDB header:hydrolase
Chain: B: PDB Molecule:glycosyl hydrolase, family 8;
PDBTitle: cpf_2247, a novel alpha-amylase from clostridium perfringens
95d1su3a1
not modelled 6.4 17 Fold:PGBD-like
Superfamily:PGBD-like
Family:MMP N-terminal domain
96d2etja1
not modelled 6.4 13 Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:Ribonuclease H
97c2etjA_
not modelled 6.4 13 PDB header:hydrolase
Chain: A: PDB Molecule:ribonuclease hii;
PDBTitle: crystal structure of ribonuclease hii (ec 3.1.26.4) (rnase hii)2 (tm0915) from thermotoga maritima at 1.74 a resolution
98d3pmga4
not modelled 6.3 20 Fold:TBP-like
Superfamily:Phosphoglucomutase, C-terminal domain
Family:Phosphoglucomutase, C-terminal domain
99c3no8A_
not modelled 6.3 25 PDB header:isomerase regulator
Chain: A: PDB Molecule:btb/poz domain-containing protein 2;
PDBTitle: crystal structure of the phr domain from human btbd2 protein

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0