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  Protein Homology/analogY Recognition Engine V 2.2
 

Fold library entry viewer: c2qx5B_

Fold library idPDB HeaderMoleculeTitle
c2qx5B_PDB header: transport proteinChain: B: PDB Molecule: nucleoporin nic96;PDBTitle: structure of nucleoporin nic96


Added to library: Tue Mar 16 13:52:43 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence LNVNENNILREKFENYARIVFQFNNSRQANGNFDIANEFISILSSANGTRNAQLLESWKILESMKSKDIN
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Known secondary structure (DSSP)

TTSS




T

STTTTS


 .........80.........90.........100.........110.........120.........130.........140
Sequence IVEVGKQYLEQQFLQYTDNLYKKNMNEGLATNVNKIKSFIDTKLKKADKSWKISNLTVINGVPIWALIFY
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Known secondary structure (DSSP) TTTT

SS

TTTTTSSS



BTTB
 .........150.........160.........170.........180.........190.........200.........210
Sequence LLRAGLIKEALQVLVENEQSFLTYFKAYDPYRLAVYKLIGRCDLSRKNIPAVTLSIEDWLWMHLMLIERY
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Known secondary structure (DSSP) TTT



TT




GGG


TTS

S



 .........220.........230.........240.........250.........260.........270.........280
Sequence SLEDFQNIIISYGPSRFSNYYLQTLLLSGLYGLAIDYTYTFSEMDAVHLAIGLASLKLRFANILANYTKS
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Known secondary structure (DSSP)

GGGSTT
TT
TT
TTT

GGG
 .........290.........300.........310.........320.........330.........340.........350
Sequence FRYSDPRVAVEYLVLITLNEGPTDVELCHEALRELVLETKEFTVLLGKIGRDGARIPGVIEERQPLLHVR
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Known secondary structure (DSSP) GTTT
GGGS

TT



TTS


T
GGG

S
 .........360.........370.........380.........390.........400.........410.........420
Sequence DEKEFLHTITEQAARRADEDGRIYDSILLYQLAEEYDIVITLVNSLLSDTLSASDLDQPLVGPDDNSETN
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Known secondary structure (DSSP) STTTT
TT
S
TTS
SS
TT

TTT
 .........430.........440.........450.........460.........470.........480.........490
Sequence PVLLARRMASIYFDNAGISRQIHVKNKEICMLLLNISSIRELYFNKQWQETLSQMELLDLLPFSARKKAQ
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Known secondary structure (DSSP) TT
TTS
TT
T

S



 .........500.........510.........520.........530.........540.........550.........560
Sequence DFSNLDDNIVKNIPNLLIITLSCISNMIHILNESKYQSSTKGQQIDSLKNVARQCMIYAGMIQYRMPRET
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Known secondary structure (DSSP) GGGS
TTSTT


TTTGGGS
 .........
Sequence YSTLINIDV
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Known secondary structure (DSSP) TTS



Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction
Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960
 
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