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  Protein Homology/analogY Recognition Engine V 2.2
 

Fold library entry viewer: c2bldD_

Fold library idPDB HeaderMoleculeTitle
c2bldD_PDB header: virusChain: D: PDB Molecule: penton protein;PDBTitle: the quasi-atomic model of human adenovirus type 52 capsid (part 1)


Added to library: Tue Mar 16 13:10:30 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence RNSIRYSELAPLFDTTRVYLVDNKSTDVASLNYQNDHSNFLTTVIQNNDYSPGEASTQTINLDDRSHWGG
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Known secondary structure (DSSP)


TTS



S


S

SS
SS
BTTS


SSS
TT

TT
 .........80.........90.........100.........110.........120.........130.........140
Sequence DLKTILHTNMPNVNEFMFTNKFKARVMVSRSLTKDKQVELKYEWVEFTLPEGNYSETMTIDLMNNAIVEH
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Known secondary structure (DSSP)


SB
TTTT
STTT

TB

S
 .........150.........160.........170.........180.........190.........200.........210
Sequence YLKVGRQNGVLESDIGVKFDTRNFRLGFDPVTGLVMPGVYTNEAFHPDIILLPGCGVDFTHSRLSNLLGI
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Known secondary structure (DSSP) TTTTGGGS

STT



TTSS

TTT
TTSS




TT

TT
TT
 .........220.........230.........240.........250.........260.........270.........280
Sequence RKRQPFQEGFRITYDDLEGGNIPALLDVDAYQASLKKPVIKPLTEDSKKRSYNLISNDSTFTQYRSWYLA
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Known secondary structure (DSSP) SSTTS


TTTS
S
B
T



TT
B



GGG



BSSSS
S
 .........290.........300.........310.........320.........330.........340.........350
Sequence YNYGDPQTGIRSWTLLCTPDVTCGSEQVYWSLPDMMQDPVTFRSTSQISNFPVVGAELLPVHSKSFYNDQ
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Known secondary structure (DSSP) S
TTTSSTTT



TTSS



TTTB


TT



S
TTT




S


TT
 .........360.........370.........380.........390.........400.........410.........420
Sequence AVYSQLIRQFTSLTHVFNRFPENQILARPPAPTITTVSENVPALTDHGTLPLRNSIGGVQRVTITDARRR
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Known secondary structure (DSSP) TTTSS

TTTS
TT
TTTS




SS


B
SS
TTS
 .........430.........440
Sequence TCPYVYKALGIVSPRVLSSR
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Known secondary structure (DSSP) B
TT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction
Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960
 
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Michael Sternberg  
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