PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: d1uaxa_

Fold library id	Fold	Superfamily	Family
d1uaxa_	Ribonuclease H-like motif	Ribonuclease H-like	Ribonuclease H

Links to external resources
Added to library: Tue Mar 16 13:12:58 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence M K V A G V D E A G R G P V I G P L V I G V A V I D E K N I E R L R D I G V K D S K Q L T P G Q R E K L F S K L I D I L D D Y Y V L L V T P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
S B S
G G G T G G G S T T S
S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence K E I D E R H H S M N E L E A E K F V V A L N S L R I K P Q K I Y V D S A D V D P K R F A S L I K A G L K Y E A T V I A E H K A D A K Y E I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
S S
T
S S
S
T T S
S S
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence V S A A S I I A K V T R D R E I E K L K Q K Y G E F G S G Y P S D P R T K E W L E E Y Y K Q Y G D F P P I V R R T W E T A R K I E E R F R K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S
T T
S S
T T B
T T S T T

.

Sequence N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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All images and data generated by Phyre2 are free to use in any publication with acknowledgement
Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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Phyre2 is part of Genome3D

	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	M	K	V	A	G	V	D	E	A	G	R	G	P	V	I	G	P	L	V	I	G	V	A	V	I	D	E	K	N	I	E	R	L	R	D	I	G	V	K	D	S	K	Q	L	T	P	G	Q	R	E	K	L	F	S	K	L	I	D	I	L	D	D	Y	Y	V	L	L	V	T	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											S	S		S	B	S											G	G	G								T	G	G	G	S	T	T	S																S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	K	E	I	D	E	R	H	H	S	M	N	E	L	E	A	E	K	F	V	V	A	L	N	S	L	R	I	K	P	Q	K	I	Y	V	D	S	A	D	V	D	P	K	R	F	A	S	L	I	K	A	G	L	K	Y	E	A	T	V	I	A	E	H	K	A	D	A	K	Y	E	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					T		S	S																T		S	S			S							T	T	S														S	S								T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	V	S	A	A	S	I	I	A	K	V	T	R	D	R	E	I	E	K	L	K	Q	K	Y	G	E	F	G	S	G	Y	P	S	D	P	R	T	K	E	W	L	E	E	Y	Y	K	Q	Y	G	D	F	P	P	I	V	R	R	T	W	E	T	A	R	K	I	E	E	R	F	R	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																											T	T	S		T	T																S	S			T	T	B		T	T	S											T	T
	.
Sequence	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)