PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: d1ekea_

Fold library id	Fold	Superfamily	Family
d1ekea_	Ribonuclease H-like motif	Ribonuclease H-like	Ribonuclease H

Links to external resources
Added to library: Tue Mar 16 13:13:21 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence X I I I G I D E A G R G P V L G P X V V C A F A I E K E R E E E L K K L G V K E L T K N K R A Y L K K L L E N L G Y V E K R I L E A E E I N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
S B S
G G G T T T
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence Q L X N S I N L N D I E I N A F S K V A K N L I E K L N I R D D E I E I Y I D A C S T N T K K F E D S F K D K I E D I I K E R N L N I K I I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T S
T T
S S
S S
T T T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence A E H K A D A K Y P V V S A A S I I A K A E R D E I I D Y Y K K I Y G D I G S G Y P S D P K T I K F L E D Y F K K H K K L P D I A R T H W K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T G G G T
T S
T T S S T T S S S
T T B
T T S

. . . . . . . . . 220 . .

Sequence T C K R I L D K S K Q T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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Phyre2 is part of Genome3D

	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	X	I	I	I	G	I	D	E	A	G	R	G	P	V	L	G	P	X	V	V	C	A	F	A	I	E	K	E	R	E	E	E	L	K	K	L	G	V	K	E	L	T	K	N	K	R	A	Y	L	K	K	L	L	E	N	L	G	Y	V	E	K	R	I	L	E	A	E	E	I	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											S	S		S	B	S											G	G	G						T	T	T																				S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	Q	L	X	N	S	I	N	L	N	D	I	E	I	N	A	F	S	K	V	A	K	N	L	I	E	K	L	N	I	R	D	D	E	I	E	I	Y	I	D	A	C	S	T	N	T	K	K	F	E	D	S	F	K	D	K	I	E	D	I	I	K	E	R	N	L	N	I	K	I	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T	T	T	S																					T	T			S	S										S	S																		T	T	T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	A	E	H	K	A	D	A	K	Y	P	V	V	S	A	A	S	I	I	A	K	A	E	R	D	E	I	I	D	Y	Y	K	K	I	Y	G	D	I	G	S	G	Y	P	S	D	P	K	T	I	K	F	L	E	D	Y	F	K	K	H	K	K	L	P	D	I	A	R	T	H	W	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T	T	G	G	G	T																										T	S			T	T	S	S	T	T	S															S	S			T	T	B		T	T	S
	.	.	.	.	.	.	.	.	.	220	.	.
Sequence	T	C	K	R	I	L	D	K	S	K	Q	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									T	T