Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	G	I	F	S	R	F	A	D	I	V	N	A	N	I	N	A	L	L	E	K	A	E	D	P	Q	K	L	V	R	L	M	I	Q	E	M	E	D	T	L	V	E	V	R	S	T	S	A	R	A	L	A	E	K	K	Q	L	T	R	R
Secondary structure
SS confidence
Disorder		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		I	E	Q	A	S	A	R	E	V	E	W	Q	E	K	A	E	L	A	L	L	K	E	R	E	D	L	A	R	A	A	L	I	E	K	Q	K	L	T	D	L	I	K	S	L	E	H	E	V	T	L	V	D	D	T	L	A	R	M	K	K
Secondary structure
SS confidence
Disorder																						?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		E	I	G	E	L	E	N	K	L	S	E	T	R	A	R	Q	Q	A	L	M	L	R	H	Q	A	A	N	S	S	R	D	V	R	R	Q	L	D	S	G	K	L	D	E	A	M	A	R	F	E	S	F	E	R	R	I	D	Q	M	E	A
Secondary structure
SS confidence
Disorder																																					?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
Sequence		E	A	E	S	H	S	F	G	K	Q	K	S	L	D	D	Q	F	A	E	L	K	A	D	D	A	I	S	E	Q	L	A	Q	L	K	A	K	M	K	Q	D	N	Q
Secondary structure
SS confidence
Disorder								?	?	?	?	?	?										?	?	?	?												?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3oja chain B Region: 3 - 149 Aligned: 145 Modelled: 146 Confidence: 96.4% Identity: 13% PDB header:protein binding Chain: B: PDB Molecule:anopheles plasmodium-responsive leucine-rich repeat protein PDBTitle: crystal structure of lrim1/apl1c complex Phyre2 PDB 3ghg chain K Region: 1 - 122 Aligned: 122 Modelled: 122 Confidence: 96.3% Identity: 7% PDB header:blood clotting Chain: K: PDB Molecule:fibrinogen beta chain; PDBTitle: crystal structure of human fibrinogen Phyre2 PDB 1deq chain O Region: 18 - 125 Aligned: 108 Modelled: 108 Confidence: 93.6% Identity: 9% PDB header: PDB COMPND: Phyre2 PDB 2efr chain B Region: 19 - 178 Aligned: 151 Modelled: 155 Confidence: 93.2% Identity: 13% PDB header:contractile protein Chain: B: PDB Molecule:general control protein gcn4 and tropomyosin 1 alpha chain; PDBTitle: crystal structure of the c-terminal tropomyosin fragment with n- and2 c-terminal extensions of the leucine zipper at 1.8 angstroms3 resolution Phyre2 PDB 1ei3 chain E Region: 11 - 122 Aligned: 112 Modelled: 112 Confidence: 92.9% Identity: 10% PDB header: PDB COMPND: Phyre2 PDB 2d3e chain D Region: 24 - 150 Aligned: 127 Modelled: 127 Confidence: 92.8% Identity: 13% PDB header:contractile protein Chain: D: PDB Molecule:general control protein gcn4 and tropomyosin 1 PDBTitle: crystal structure of the c-terminal fragment of rabbit2 skeletal alpha-tropomyosin Phyre2 PDB 2fxm chain B Region: 29 - 143 Aligned: 110 Modelled: 110 Confidence: 92.4% Identity: 14% PDB header:contractile protein Chain: B: PDB Molecule:myosin heavy chain, cardiac muscle beta isoform; PDBTitle: structure of the human beta-myosin s2 fragment Phyre2 PDB 2b9c chain A Region: 19 - 150 Aligned: 127 Modelled: 132 Confidence: 91.1% Identity: 14% PDB header:contractile protein Chain: A: PDB Molecule:striated-muscle alpha tropomyosin; PDBTitle: structure of tropomyosin's mid-region: bending and binding2 sites for actin Phyre2 PDB 1deq chain F Region: 20 - 129 Aligned: 109 Modelled: 110 Confidence: 90.6% Identity: 13% PDB header: PDB COMPND: Phyre2 PDB 2rd0 chain B Region: 29 - 151 Aligned: 123 Modelled: 123 Confidence: 89.9% Identity: 12% PDB header:transferase/oncoprotein Chain: B: PDB Molecule:phosphatidylinositol 3-kinase regulatory subunit alpha; PDBTitle: structure of a human p110alpha/p85alpha complex Phyre2 PDB 3o0z chain D Region: 24 - 181 Aligned: 153 Modelled: 153 Confidence: 88.5% Identity: 12% PDB header:transferase Chain: D: PDB Molecule:rho-associated protein kinase 1; PDBTitle: crystal structure of a coiled-coil domain from human rock i Phyre2 PDB 3na7 chain A Region: 1 - 182 Aligned: 182 Modelled: 182 Confidence: 87.9% Identity: 12% PDB header:gene regulation, chaperone Chain: A: PDB Molecule:hp0958; PDBTitle: 2.2 angstrom structure of the hp0958 protein from helicobacter pylori2 ccug 17874 Phyre2 PDB 1bf5 chain A Region: 17 - 182 Aligned: 162 Modelled: 166 Confidence: 85.4% Identity: 8% PDB header:gene regulation/dna Chain: A: PDB Molecule:signal transducer and activator of transcription PDBTitle: tyrosine phosphorylated stat-1/dna complex Phyre2 PDB 3oja chain A Region: 12 - 175 Aligned: 160 Modelled: 164 Confidence: 85.4% Identity: 10% PDB header:protein binding Chain: A: PDB Molecule:leucine-rich immune molecule 1; PDBTitle: crystal structure of lrim1/apl1c complex Phyre2 PDB 3cwg chain A Region: 31 - 192 Aligned: 162 Modelled: 162 Confidence: 83.4% Identity: 10% PDB header:transcription Chain: A: PDB Molecule:signal transducer and activator of transcription PDBTitle: unphosphorylated mouse stat3 core fragment Phyre2 PDB 1cii chain A Region: 11 - 219 Aligned: 208 Modelled: 209 Confidence: 80.5% Identity: 10% PDB header:transmembrane protein Chain: A: PDB Molecule:colicin ia; PDBTitle: colicin ia Phyre2 PDB 2v71 chain A Region: 9 - 156 Aligned: 147 Modelled: 148 Confidence: 80.0% Identity: 10% PDB header:nuclear protein Chain: A: PDB Molecule:nuclear distribution protein nude-like 1; PDBTitle: coiled-coil region of nudel Phyre2 PDB 1l8d chain B Region: 29 - 129 Aligned: 101 Modelled: 101 Confidence: 79.9% Identity: 10% PDB header:replication Chain: B: PDB Molecule:dna double-strand break repair rad50 atpase; PDBTitle: rad50 coiled-coil zn hook Phyre2 PDB 4a55 chain B Region: 26 - 150 Aligned: 125 Modelled: 125 Confidence: 79.2% Identity: 13% PDB header:transferase Chain: B: PDB Molecule:phosphatidylinositol 3-kinase regulatory subunit alpha; PDBTitle: crystal structure of p110alpha in complex with ish2 of p85alpha and2 the inhibitor pik-108 Phyre2 PDB 3dtp chain A Region: 28 - 150 Aligned: 118 Modelled: 118 Confidence: 70.7% Identity: 13% PDB header:contractile protein Chain: A: PDB Molecule:myosin 2 heavy chain chimera of smooth and PDBTitle: tarantula heavy meromyosin obtained by flexible docking to2 tarantula muscle thick filament cryo-em 3d-map Phyre2 1 c3ojaB_ 2 c3ghgK_ 3 c1deqO_ 4 c2efrB_ 5 c1ei3E_ 6 c2d3eD_ 7 c2fxmB_ 8 c2b9cA_ 9 c1deqF_ 10 c2rd0B_ 11 c3o0zD_ 12 c3na7A_ 13 c1bf5A_ 14 c3ojaA_ 15 c3cwgA_ 16 c1ciiA_ 17 c2v71A_ 18 c1l8dB_ 19 c4a55B_ 20 c3dtpA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3ojaB_ 96.4 13 PDB header:protein binding Chain: B: PDB Molecule:anopheles plasmodium-responsive leucine-rich repeat protein PDBTitle: crystal structure of lrim1/apl1c complex 2 c3ghgK_ 96.3 7 PDB header:blood clotting Chain: K: PDB Molecule:fibrinogen beta chain; PDBTitle: crystal structure of human fibrinogen 3 c1deqO_ 93.6 9 PDB header: PDB COMPND: 4 c2efrB_ 93.2 13 PDB header:contractile protein Chain: B: PDB Molecule:general control protein gcn4 and tropomyosin 1 alpha chain; PDBTitle: crystal structure of the c-terminal tropomyosin fragment with n- and2 c-terminal extensions of the leucine zipper at 1.8 angstroms3 resolution 5 c1ei3E_ 92.9 10 PDB header: PDB COMPND: 6 c2d3eD_ 92.8 13 PDB header:contractile protein Chain: D: PDB Molecule:general control protein gcn4 and tropomyosin 1 PDBTitle: crystal structure of the c-terminal fragment of rabbit2 skeletal alpha-tropomyosin 7 c2fxmB_ 92.4 14 PDB header:contractile protein Chain: B: PDB Molecule:myosin heavy chain, cardiac muscle beta isoform; PDBTitle: structure of the human beta-myosin s2 fragment 8 c2b9cA_ 91.1 14 PDB header:contractile protein Chain: A: PDB Molecule:striated-muscle alpha tropomyosin; PDBTitle: structure of tropomyosin's mid-region: bending and binding2 sites for actin 9 c1deqF_ 90.6 13 PDB header: PDB COMPND: 10 c2rd0B_ 89.9 12 PDB header:transferase/oncoprotein Chain: B: PDB Molecule:phosphatidylinositol 3-kinase regulatory subunit alpha; PDBTitle: structure of a human p110alpha/p85alpha complex 11 c3o0zD_ 88.5 12 PDB header:transferase Chain: D: PDB Molecule:rho-associated protein kinase 1; PDBTitle: crystal structure of a coiled-coil domain from human rock i 12 c3na7A_ 87.9 12 PDB header:gene regulation, chaperone Chain: A: PDB Molecule:hp0958; PDBTitle: 2.2 angstrom structure of the hp0958 protein from helicobacter pylori2 ccug 17874 13 c1bf5A_ 85.4 8 PDB header:gene regulation/dna Chain: A: PDB Molecule:signal transducer and activator of transcription PDBTitle: tyrosine phosphorylated stat-1/dna complex 14 c3ojaA_ 85.4 10 PDB header:protein binding Chain: A: PDB Molecule:leucine-rich immune molecule 1; PDBTitle: crystal structure of lrim1/apl1c complex 15 c3cwgA_ 83.4 10 PDB header:transcription Chain: A: PDB Molecule:signal transducer and activator of transcription PDBTitle: unphosphorylated mouse stat3 core fragment 16 c1ciiA_ 80.5 10 PDB header:transmembrane protein Chain: A: PDB Molecule:colicin ia; PDBTitle: colicin ia 17 c2v71A_ 80.0 10 PDB header:nuclear protein Chain: A: PDB Molecule:nuclear distribution protein nude-like 1; PDBTitle: coiled-coil region of nudel 18 c1l8dB_ 79.9 10 PDB header:replication Chain: B: PDB Molecule:dna double-strand break repair rad50 atpase; PDBTitle: rad50 coiled-coil zn hook 19 c4a55B_ 79.2 13 PDB header:transferase Chain: B: PDB Molecule:phosphatidylinositol 3-kinase regulatory subunit alpha; PDBTitle: crystal structure of p110alpha in complex with ish2 of p85alpha and2 the inhibitor pik-108 20 c3dtpA_ 70.7 13 PDB header:contractile protein Chain: A: PDB Molecule:myosin 2 heavy chain chimera of smooth and PDBTitle: tarantula heavy meromyosin obtained by flexible docking to2 tarantula muscle thick filament cryo-em 3d-map 21 c3ipkA_ not modelled 69.5 16 PDB header:cell adhesion Chain: A: PDB Molecule:agi/ii; PDBTitle: crystal structure of a3vp1 of agi/ii of streptococcus mutans 22 c1y4cA_ not modelled 67.9 7 PDB header:de novo protein Chain: A: PDB Molecule:maltose binding protein fused with designed PDBTitle: designed helical protein fusion mbp 23 c3hizB_ not modelled 66.7 15 PDB header:transferase/oncoprotein Chain: B: PDB Molecule:phosphatidylinositol 3-kinase regulatory subunit PDBTitle: crystal structure of p110alpha h1047r mutant in complex with2 nish2 of p85alpha 24 d1vmaa1 not modelled 66.1 13 Fold:Four-helical up-and-down bundle Superfamily:Domain of the SRP/SRP receptor G-proteins Family:Domain of the SRP/SRP receptor G-proteins 25 c3ol1A_ not modelled 64.0 11 PDB header:structural protein Chain: A: PDB Molecule:vimentin; PDBTitle: crystal structure of vimentin (fragment 144-251) from homo sapiens,2 northeast structural genomics consortium target hr4796b 26 c3u59C_ not modelled 63.5 12 PDB header:contractile protein Chain: C: PDB Molecule:tropomyosin beta chain; PDBTitle: n-terminal 98-aa fragment of smooth muscle tropomyosin beta 27 c1c1gA_ not modelled 59.8 14 PDB header:contractile protein Chain: A: PDB Molecule:tropomyosin; PDBTitle: crystal structure of tropomyosin at 7 angstroms resolution2 in the spermine-induced crystal form 28 c3iv1F_ not modelled 57.8 11 PDB header:hydrolase Chain: F: PDB Molecule:tumor susceptibility gene 101 protein; PDBTitle: coiled-coil domain of tumor susceptibility gene 101 29 c2jeeA_ not modelled 53.2 19 PDB header:cell cycle Chain: A: PDB Molecule:yiiu; PDBTitle: xray structure of e. coli yiiu 30 c1ei3C_ not modelled 52.4 15 PDB header: PDB COMPND: 31 c2v66C_ not modelled 52.2 7 PDB header:structural protein Chain: C: PDB Molecule:nuclear distribution protein nude-like 1; PDBTitle: crystal structure of the coiled-coil domain of ndel1 (a.a.2 58 to 169)c 32 c1bg1A_ not modelled 51.7 12 PDB header:transcription/dna Chain: A: PDB Molecule:protein (transcription factor stat3b); PDBTitle: transcription factor stat3b/dna complex 33 c3hnwB_ not modelled 43.5 12 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a basic coiled-coil protein of unknown function2 from eubacterium eligens atcc 27750 34 c1deqD_ not modelled 42.5 5 PDB header: PDB COMPND: 35 c2gl2B_ not modelled 42.2 13 PDB header:cell adhesion Chain: B: PDB Molecule:adhesion a; PDBTitle: crystal structure of the tetra muntant (t66g,r67g,f68g,2 y69g) of bacterial adhesin fada 36 c2y3aB_ not modelled 42.2 12 PDB header:transferase Chain: B: PDB Molecule:phosphatidylinositol 3-kinase regulatory subunit beta; PDBTitle: crystal structure of p110beta in complex with icsh2 of p85beta and2 the drug gdc-0941 37 c2v1yB_ not modelled 37.9 13 PDB header:transferase Chain: B: PDB Molecule:phosphatidylinositol 3-kinase regulatory subunit alpha; PDBTitle: structure of a phosphoinositide 3-kinase alpha adaptor-2 binding domain (abd) in a complex with the ish2 domain3 from p85 alpha 38 c3movB_ not modelled 35.7 11 PDB header:structural protein Chain: B: PDB Molecule:lamin-b1; PDBTitle: crystal structure of human lamin-b1 coil 2 segment 39 c3kltB_ not modelled 33.8 7 PDB header:structural protein Chain: B: PDB Molecule:vimentin; PDBTitle: crystal structure of a vimentin fragment 40 c3u1aC_ not modelled 31.6 9 PDB header:contractile protein Chain: C: PDB Molecule:smooth muscle tropomyosin alpha; PDBTitle: n-terminal 81-aa fragment of smooth muscle tropomyosin alpha 41 c1yvlB_ not modelled 29.1 12 PDB header:signaling protein Chain: B: PDB Molecule:signal transducer and activator of transcription PDBTitle: structure of unphosphorylated stat1 42 c1gk4A_ not modelled 28.3 11 PDB header:vimentin Chain: A: PDB Molecule:vimentin; PDBTitle: human vimentin coil 2b fragment (cys2) 43 d1fxka_ not modelled 27.9 13 Fold:Long alpha-hairpin Superfamily:Prefoldin Family:Prefoldin 44 d2gqba1 not modelled 25.3 27 Fold:RPA2825-like Superfamily:RPA2825-like Family:RPA2825-like 45 c3a7pB_ not modelled 21.9 9 PDB header:protein transport Chain: B: PDB Molecule:autophagy protein 16; PDBTitle: the crystal structure of saccharomyces cerevisiae atg16 46 c1vmaA_ not modelled 21.7 13 PDB header:protein transport Chain: A: PDB Molecule:cell division protein ftsy; PDBTitle: crystal structure of cell division protein ftsy (tm0570) from2 thermotoga maritima at 1.60 a resolution 47 c1x8yA_ not modelled 18.7 10 PDB header:structural protein Chain: A: PDB Molecule:lamin a/c; PDBTitle: human lamin coil 2b 48 d1r05a_ not modelled 17.4 16 Fold:HLH-like Superfamily:HLH, helix-loop-helix DNA-binding domain Family:HLH, helix-loop-helix DNA-binding domain 49 d2daha1 not modelled 16.9 36 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 50 d2bwba1 not modelled 15.6 18 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 51 c1jchC_ not modelled 15.4 7 PDB header:ribosome inhibitor, hydrolase Chain: C: PDB Molecule:colicin e3; PDBTitle: crystal structure of colicin e3 in complex with its immunity protein 52 c2xdjF_ not modelled 14.3 9 PDB header:unknown function Chain: F: PDB Molecule:uncharacterized protein ybgf; PDBTitle: crystal structure of the n-terminal domain of e.coli ybgf 53 c1junB_ not modelled 13.6 17 PDB header:transcription regulation Chain: B: PDB Molecule:c-jun homodimer; PDBTitle: nmr study of c-jun homodimer 54 c2zvfG_ not modelled 13.4 13 PDB header:ligase Chain: G: PDB Molecule:alanyl-trna synthetase; PDBTitle: crystal structure of archaeoglobus fulgidus alanyl-trna2 synthetase c-terminal dimerization domain 55 c3n4xB_ not modelled 13.4 10 PDB header:replication Chain: B: PDB Molecule:monopolin complex subunit csm1; PDBTitle: structure of csm1 full-length 56 c1m1jA_ not modelled 13.4 13 PDB header:blood clotting Chain: A: PDB Molecule:fibrinogen alpha subunit; PDBTitle: crystal structure of native chicken fibrinogen with two different2 bound ligands 57 c2dnaA_ not modelled 12.7 32 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:unnamed protein product; PDBTitle: solution structure of rsgi ruh-056, a uba domain from mouse2 cdna 58 c2qa7B_ not modelled 11.7 13 PDB header:actin binding Chain: B: PDB Molecule:huntingtin-interacting protein 1; PDBTitle: crystal structure of huntingtin-interacting protein 12 (hip1) coiled-coil domain with a basic surface suitable3 for hip-protein interactor (hippi) 59 c1gk7A_ not modelled 11.6 20 PDB header:vimentin Chain: A: PDB Molecule:vimentin; PDBTitle: human vimentin coil 1a fragment (1a) 60 d2cp8a1 not modelled 11.2 50 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 61 c3qh9A_ not modelled 11.2 14 PDB header:structural protein Chain: A: PDB Molecule:liprin-beta-2; PDBTitle: human liprin-beta2 coiled-coil 62 c3he4A_ not modelled 10.9 14 PDB header:de novo protein Chain: A: PDB Molecule:synzip6; PDBTitle: heterospecific coiled-coil pair synzip5:synzip6 63 c3m9bK_ not modelled 10.4 10 PDB header:chaperone Chain: K: PDB Molecule:proteasome-associated atpase; PDBTitle: crystal structure of the amino terminal coiled coil domain and the2 inter domain of the mycobacterium tuberculosis proteasomal atpase mpa 64 c1ic2B_ not modelled 9.8 19 PDB header:contractile protein Chain: B: PDB Molecule:tropomyosin alpha chain, skeletal muscle; PDBTitle: deciphering the design of the tropomyosin molecule 65 d1z0kb1 not modelled 9.7 9 Fold:Long alpha-hairpin Superfamily:Rabenosyn-5 Rab-binding domain-like Family:Rabenosyn-5 Rab-binding domain-like 66 c1ci6A_ not modelled 9.7 12 PDB header:transcription Chain: A: PDB Molecule:transcription factor atf-4; PDBTitle: transcription factor atf4-c/ebp beta bzip heterodimer 67 c2jy5A_ not modelled 9.7 40 PDB header:signaling protein Chain: A: PDB Molecule:ubiquilin-1; PDBTitle: nmr structure of ubiquilin 1 uba domain 68 c1fosF_ not modelled 9.6 10 PDB header:transcription/dna Chain: F: PDB Molecule:c-jun proto-oncogene protein; PDBTitle: two human c-fos:c-jun:dna complexes 69 c2hpcF_ not modelled 9.3 12 PDB header:blood clotting Chain: F: PDB Molecule:fibrinogen, gamma polypeptide; PDBTitle: crystal structure of fragment d from human fibrinogen complexed with2 gly-pro-arg-pro-amide. 70 c1sjjB_ not modelled 9.2 6 PDB header:contractile protein Chain: B: PDB Molecule:actinin; PDBTitle: cryo-em structure of chicken gizzard smooth muscle alpha-2 actinin 71 c2wukD_ not modelled 9.2 18 PDB header:cell cycle Chain: D: PDB Molecule:septum site-determining protein diviva; PDBTitle: diviva n-terminal domain, f17a mutant 72 c3layF_ not modelled 9.0 11 PDB header:metal binding protein Chain: F: PDB Molecule:zinc resistance-associated protein; PDBTitle: alpha-helical barrel formed by the decamer of the zinc resistance-2 associated protein (stm4172) from salmonella enterica subsp. enterica3 serovar typhimurium str. lt2 73 d1lvfa_ not modelled 8.9 18 Fold:STAT-like Superfamily:t-snare proteins Family:t-snare proteins 74 c3p8cD_ not modelled 8.8 10 PDB header:protein binding Chain: D: PDB Molecule:wiskott-aldrich syndrome protein family member 1; PDBTitle: structure and control of the actin regulatory wave complex 75 c2kxoA_ not modelled 8.8 14 PDB header:cell cycle Chain: A: PDB Molecule:cell division topological specificity factor; PDBTitle: solution nmr structure of the cell division regulator mine protein2 from neisseria gonorrhoeae 76 c1jccC_ not modelled 8.7 13 PDB header:membrane protein Chain: C: PDB Molecule:major outer membrane lipoprotein; PDBTitle: crystal structure of a novel alanine-zipper trimer at 1.7 a2 resolution, v13a,l16a,v20a,l23a,v27a,m30a,v34a mutations 77 c1gd2G_ not modelled 8.6 15 PDB header:transcription/dna Chain: G: PDB Molecule:transcription factor pap1; PDBTitle: crystal structure of bzip transcription factor pap1 bound2 to dna 78 d2dnaa1 not modelled 8.6 30 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 79 d1fxkc_ not modelled 8.5 19 Fold:Long alpha-hairpin Superfamily:Prefoldin Family:Prefoldin 80 c3og02_ not modelled 8.4 33 PDB header:ribosome Chain: 2: PDB Molecule:50s ribosomal protein l34; PDBTitle: crystal structure of the e. coli ribosome bound to clindamycin. this2 file contains the 50s subunit of the second 70s ribosome. 81 c1t2kD_ not modelled 8.4 15 PDB header:transcription/dna Chain: D: PDB Molecule:cyclic-amp-dependent transcription factor atf-2; PDBTitle: structure of the dna binding domains of irf3, atf-2 and jun2 bound to dna 82 c1novE_ not modelled 8.3 21 PDB header:virus Chain: E: PDB Molecule:nodamura virus coat proteins; PDBTitle: nodamura virus 83 d1k8ib2 not modelled 8.1 38 Fold:MHC antigen-recognition domain Superfamily:MHC antigen-recognition domain Family:MHC antigen-recognition domain 84 c1htmB_ not modelled 8.1 13 PDB header:viral protein Chain: B: PDB Molecule:hemagglutinin ha2 chain; PDBTitle: structure of influenza haemagglutinin at the ph of membrane2 fusion 85 c3qw3B_ not modelled 8.1 17 PDB header:transferase, lyase Chain: B: PDB Molecule:orotidine-5-phosphate decarboxylase/orotate PDBTitle: structure of leishmania donovani omp decarboxylase 86 c2dahA_ not modelled 8.1 40 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:ubiquilin-3; PDBTitle: solution structure of the c-terminal uba domain in the2 human ubiquilin 3 87 d1yzma1 not modelled 8.1 8 Fold:Long alpha-hairpin Superfamily:Rabenosyn-5 Rab-binding domain-like Family:Rabenosyn-5 Rab-binding domain-like 88 c2zdiC_ not modelled 8.0 13 PDB header:chaperone Chain: C: PDB Molecule:prefoldin subunit alpha; PDBTitle: crystal structure of prefoldin from pyrococcus horikoshii2 ot3 89 c2no2A_ not modelled 7.9 14 PDB header:cell adhesion Chain: A: PDB Molecule:huntingtin-interacting protein 1; PDBTitle: crystal structure of the dllrkn-containing coiled-coil2 domain of huntingtin-interacting protein 1 90 c3cvfA_ not modelled 7.7 18 PDB header:signaling protein Chain: A: PDB Molecule:homer protein homolog 3; PDBTitle: crystal structure of the carboxy terminus of homer3 91 c3orb2_ not modelled 7.7 33 PDB header:ribosome Chain: 2: PDB Molecule:50s ribosomal protein l34; PDBTitle: crystal structure of the e. coli ribosome bound to cem-101. this file2 contains the 50s subunit of the first 70s ribosome bound to cem-101. 92 c3onjA_ not modelled 7.6 13 PDB header:protein transport Chain: A: PDB Molecule:t-snare vti1; PDBTitle: crystal structure of yeast vti1p_habc domain 93 c3g67A_ not modelled 7.6 11 PDB header:signaling protein Chain: A: PDB Molecule:methyl-accepting chemotaxis protein; PDBTitle: crystal structure of a soluble chemoreceptor from thermotoga2 maritima 94 c2cwbA_ not modelled 7.5 30 PDB header:protein binding Chain: A: PDB Molecule:chimera of immunoglobulin g binding protein g PDBTitle: solution structure of the ubiquitin-associated domain of2 human bmsc-ubp and its complex with ubiquitin 95 d1khia2 not modelled 7.5 10 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 96 c1kddC_ not modelled 7.4 19 PDB header:de novo protein Chain: C: PDB Molecule:gcn4 acid base heterodimer acid-d12la16i; PDBTitle: x-ray structure of the coiled coil gcn4 acid base2 heterodimer acid-d12la16i base-d12la16l 97 d1vcsa1 not modelled 7.4 7 Fold:STAT-like Superfamily:t-snare proteins Family:t-snare proteins 98 c1wr1B_ not modelled 7.3 30 PDB header:signaling protein Chain: B: PDB Molecule:ubiquitin-like protein dsk2; PDBTitle: the complex sturcture of dsk2p uba with ubiquitin 99 d1veja1 not modelled 7.3 30 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0