Phyre 2 Results for P0AFM6

Email | l.a.kelley@imperial.ac.uk
Description | P0AFM6
Date | Thu Jan 5 11:26:46 GMT 2012
Unique Job ID | 30ef9878c4e902c3

Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | c3ojaB_ |
|  | 96.4 | 13 | PDB header:protein binding Chain: B: PDB Molecule:anopheles plasmodium-responsive leucine-rich repeat protein PDBTitle: crystal structure of lrim1/apl1c complex
2 | c3ghgK_ |
|  | 96.3 | 7 | PDB header:blood clotting Chain: K: PDB Molecule:fibrinogen beta chain; PDBTitle: crystal structure of human fibrinogen
3 | c1deqO_ |
|  | 93.6 | 9 | PDB header: PDB COMPND:
4 | c2efrB_ |
|  | 93.2 | 13 | PDB header:contractile protein Chain: B: PDB Molecule:general control protein gcn4 and tropomyosin 1 alpha chain; PDBTitle: crystal structure of the c-terminal tropomyosin fragment with n- and2 c-terminal extensions of the leucine zipper at 1.8 angstroms3 resolution
5 | c1ei3E_ |
|  | 92.9 | 10 | PDB header: PDB COMPND:
6 | c2d3eD_ |
|  | 92.8 | 13 | PDB header:contractile protein Chain: D: PDB Molecule:general control protein gcn4 and tropomyosin 1 PDBTitle: crystal structure of the c-terminal fragment of rabbit2 skeletal alpha-tropomyosin
7 | c2fxmB_ |
|  | 92.4 | 14 | PDB header:contractile protein Chain: B: PDB Molecule:myosin heavy chain, cardiac muscle beta isoform; PDBTitle: structure of the human beta-myosin s2 fragment
8 | c2b9cA_ |
|  | 91.1 | 14 | PDB header:contractile protein Chain: A: PDB Molecule:striated-muscle alpha tropomyosin; PDBTitle: structure of tropomyosin's mid-region: bending and binding2 sites for actin
9 | c1deqF_ |
|  | 90.6 | 13 | PDB header: PDB COMPND:
10 | c2rd0B_ |
|  | 89.9 | 12 | PDB header:transferase/oncoprotein Chain: B: PDB Molecule:phosphatidylinositol 3-kinase regulatory subunit alpha; PDBTitle: structure of a human p110alpha/p85alpha complex
11 | c3o0zD_ |
|  | 88.5 | 12 | PDB header:transferase Chain: D: PDB Molecule:rho-associated protein kinase 1; PDBTitle: crystal structure of a coiled-coil domain from human rock i
12 | c3na7A_ |
|  | 87.9 | 12 | PDB header:gene regulation, chaperone Chain: A: PDB Molecule:hp0958; PDBTitle: 2.2 angstrom structure of the hp0958 protein from helicobacter pylori2 ccug 17874
13 | c1bf5A_ |
|  | 85.4 | 8 | PDB header:gene regulation/dna Chain: A: PDB Molecule:signal transducer and activator of transcription PDBTitle: tyrosine phosphorylated stat-1/dna complex
14 | c3ojaA_ |
|  | 85.4 | 10 | PDB header:protein binding Chain: A: PDB Molecule:leucine-rich immune molecule 1; PDBTitle: crystal structure of lrim1/apl1c complex
15 | c3cwgA_ |
|  | 83.4 | 10 | PDB header:transcription Chain: A: PDB Molecule:signal transducer and activator of transcription PDBTitle: unphosphorylated mouse stat3 core fragment
16 | c1ciiA_ |
|  | 80.5 | 10 | PDB header:transmembrane protein Chain: A: PDB Molecule:colicin ia; PDBTitle: colicin ia
17 | c2v71A_ |
|  | 80.0 | 10 | PDB header:nuclear protein Chain: A: PDB Molecule:nuclear distribution protein nude-like 1; PDBTitle: coiled-coil region of nudel
18 | c1l8dB_ |
|  | 79.9 | 10 | PDB header:replication Chain: B: PDB Molecule:dna double-strand break repair rad50 atpase; PDBTitle: rad50 coiled-coil zn hook
19 | c4a55B_ |
|  | 79.2 | 13 | PDB header:transferase Chain: B: PDB Molecule:phosphatidylinositol 3-kinase regulatory subunit alpha; PDBTitle: crystal structure of p110alpha in complex with ish2 of p85alpha and2 the inhibitor pik-108
20 | c3dtpA_ |
|  | 70.7 | 13 | PDB header:contractile protein Chain: A: PDB Molecule:myosin 2 heavy chain chimera of smooth and PDBTitle: tarantula heavy meromyosin obtained by flexible docking to2 tarantula muscle thick filament cryo-em 3d-map
21 | c3ipkA_ |
| not modelled | 69.5 | 16 | PDB header:cell adhesion Chain: A: PDB Molecule:agi/ii; PDBTitle: crystal structure of a3vp1 of agi/ii of streptococcus mutans
22 | c1y4cA_ |
| not modelled | 67.9 | 7 | PDB header:de novo protein Chain: A: PDB Molecule:maltose binding protein fused with designed PDBTitle: designed helical protein fusion mbp
23 | c3hizB_ |
| not modelled | 66.7 | 15 | PDB header:transferase/oncoprotein Chain: B: PDB Molecule:phosphatidylinositol 3-kinase regulatory subunit PDBTitle: crystal structure of p110alpha h1047r mutant in complex with2 nish2 of p85alpha
24 | d1vmaa1 |
| not modelled | 66.1 | 13 | Fold:Four-helical up-and-down bundle Superfamily:Domain of the SRP/SRP receptor G-proteins Family:Domain of the SRP/SRP receptor G-proteins
25 | c3ol1A_ |
| not modelled | 64.0 | 11 | PDB header:structural protein Chain: A: PDB Molecule:vimentin; PDBTitle: crystal structure of vimentin (fragment 144-251) from homo sapiens,2 northeast structural genomics consortium target hr4796b
26 | c3u59C_ |
| not modelled | 63.5 | 12 | PDB header:contractile protein Chain: C: PDB Molecule:tropomyosin beta chain; PDBTitle: n-terminal 98-aa fragment of smooth muscle tropomyosin beta
27 | c1c1gA_ |
| not modelled | 59.8 | 14 | PDB header:contractile protein Chain: A: PDB Molecule:tropomyosin; PDBTitle: crystal structure of tropomyosin at 7 angstroms resolution2 in the spermine-induced crystal form
28 | c3iv1F_ |
| not modelled | 57.8 | 11 | PDB header:hydrolase Chain: F: PDB Molecule:tumor susceptibility gene 101 protein; PDBTitle: coiled-coil domain of tumor susceptibility gene 101
29 | c2jeeA_ |
| not modelled | 53.2 | 19 | PDB header:cell cycle Chain: A: PDB Molecule:yiiu; PDBTitle: xray structure of e. coli yiiu
30 | c1ei3C_ |
| not modelled | 52.4 | 15 | PDB header: PDB COMPND:
31 | c2v66C_ |
| not modelled | 52.2 | 7 | PDB header:structural protein Chain: C: PDB Molecule:nuclear distribution protein nude-like 1; PDBTitle: crystal structure of the coiled-coil domain of ndel1 (a.a.2 58 to 169)c
32 | c1bg1A_ |
| not modelled | 51.7 | 12 | PDB header:transcription/dna Chain: A: PDB Molecule:protein (transcription factor stat3b); PDBTitle: transcription factor stat3b/dna complex
33 | c3hnwB_ |
| not modelled | 43.5 | 12 | PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a basic coiled-coil protein of unknown function2 from eubacterium eligens atcc 27750
34 | c1deqD_ |
| not modelled | 42.5 | 5 | PDB header: PDB COMPND:
35 | c2gl2B_ |
| not modelled | 42.2 | 13 | PDB header:cell adhesion Chain: B: PDB Molecule:adhesion a; PDBTitle: crystal structure of the tetra muntant (t66g,r67g,f68g,2 y69g) of bacterial adhesin fada
36 | c2y3aB_ |
| not modelled | 42.2 | 12 | PDB header:transferase Chain: B: PDB Molecule:phosphatidylinositol 3-kinase regulatory subunit beta; PDBTitle: crystal structure of p110beta in complex with icsh2 of p85beta and2 the drug gdc-0941
37 | c2v1yB_ |
| not modelled | 37.9 | 13 | PDB header:transferase Chain: B: PDB Molecule:phosphatidylinositol 3-kinase regulatory subunit alpha; PDBTitle: structure of a phosphoinositide 3-kinase alpha adaptor-2 binding domain (abd) in a complex with the ish2 domain3 from p85 alpha
38 | c3movB_ |
| not modelled | 35.7 | 11 | PDB header:structural protein Chain: B: PDB Molecule:lamin-b1; PDBTitle: crystal structure of human lamin-b1 coil 2 segment
39 | c3kltB_ |
| not modelled | 33.8 | 7 | PDB header:structural protein Chain: B: PDB Molecule:vimentin; PDBTitle: crystal structure of a vimentin fragment
40 | c3u1aC_ |
| not modelled | 31.6 | 9 | PDB header:contractile protein Chain: C: PDB Molecule:smooth muscle tropomyosin alpha; PDBTitle: n-terminal 81-aa fragment of smooth muscle tropomyosin alpha
41 | c1yvlB_ |
| not modelled | 29.1 | 12 | PDB header:signaling protein Chain: B: PDB Molecule:signal transducer and activator of transcription PDBTitle: structure of unphosphorylated stat1
42 | c1gk4A_ |
| not modelled | 28.3 | 11 | PDB header:vimentin Chain: A: PDB Molecule:vimentin; PDBTitle: human vimentin coil 2b fragment (cys2)
43 | d1fxka_ |
| not modelled | 27.9 | 13 | Fold:Long alpha-hairpin Superfamily:Prefoldin Family:Prefoldin
44 | d2gqba1 |
| not modelled | 25.3 | 27 | Fold:RPA2825-like Superfamily:RPA2825-like Family:RPA2825-like
45 | c3a7pB_ |
| not modelled | 21.9 | 9 | PDB header:protein transport Chain: B: PDB Molecule:autophagy protein 16; PDBTitle: the crystal structure of saccharomyces cerevisiae atg16
46 | c1vmaA_ |
| not modelled | 21.7 | 13 | PDB header:protein transport Chain: A: PDB Molecule:cell division protein ftsy; PDBTitle: crystal structure of cell division protein ftsy (tm0570) from2 thermotoga maritima at 1.60 a resolution
47 | c1x8yA_ |
| not modelled | 18.7 | 10 | PDB header:structural protein Chain: A: PDB Molecule:lamin a/c; PDBTitle: human lamin coil 2b
48 | d1r05a_ |
| not modelled | 17.4 | 16 | Fold:HLH-like Superfamily:HLH, helix-loop-helix DNA-binding domain Family:HLH, helix-loop-helix DNA-binding domain
49 | d2daha1 |
| not modelled | 16.9 | 36 | Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain
50 | d2bwba1 |
| not modelled | 15.6 | 18 | Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain
51 | c1jchC_ |
| not modelled | 15.4 | 7 | PDB header:ribosome inhibitor, hydrolase Chain: C: PDB Molecule:colicin e3; PDBTitle: crystal structure of colicin e3 in complex with its immunity protein
52 | c2xdjF_ |
| not modelled | 14.3 | 9 | PDB header:unknown function Chain: F: PDB Molecule:uncharacterized protein ybgf; PDBTitle: crystal structure of the n-terminal domain of e.coli ybgf
53 | c1junB_ |
| not modelled | 13.6 | 17 | PDB header:transcription regulation Chain: B: PDB Molecule:c-jun homodimer; PDBTitle: nmr study of c-jun homodimer
54 | c2zvfG_ |
| not modelled | 13.4 | 13 | PDB header:ligase Chain: G: PDB Molecule:alanyl-trna synthetase; PDBTitle: crystal structure of archaeoglobus fulgidus alanyl-trna2 synthetase c-terminal dimerization domain
55 | c3n4xB_ |
| not modelled | 13.4 | 10 | PDB header:replication Chain: B: PDB Molecule:monopolin complex subunit csm1; PDBTitle: structure of csm1 full-length
56 | c1m1jA_ |
| not modelled | 13.4 | 13 | PDB header:blood clotting Chain: A: PDB Molecule:fibrinogen alpha subunit; PDBTitle: crystal structure of native chicken fibrinogen with two different2 bound ligands
57 | c2dnaA_ |
| not modelled | 12.7 | 32 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:unnamed protein product; PDBTitle: solution structure of rsgi ruh-056, a uba domain from mouse2 cdna
58 | c2qa7B_ |
| not modelled | 11.7 | 13 | PDB header:actin binding Chain: B: PDB Molecule:huntingtin-interacting protein 1; PDBTitle: crystal structure of huntingtin-interacting protein 12 (hip1) coiled-coil domain with a basic surface suitable3 for hip-protein interactor (hippi)
59 | c1gk7A_ |
| not modelled | 11.6 | 20 | PDB header:vimentin Chain: A: PDB Molecule:vimentin; PDBTitle: human vimentin coil 1a fragment (1a)
60 | d2cp8a1 |
| not modelled | 11.2 | 50 | Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain
61 | c3qh9A_ |
| not modelled | 11.2 | 14 | PDB header:structural protein Chain: A: PDB Molecule:liprin-beta-2; PDBTitle: human liprin-beta2 coiled-coil
62 | c3he4A_ |
| not modelled | 10.9 | 14 | PDB header:de novo protein Chain: A: PDB Molecule:synzip6; PDBTitle: heterospecific coiled-coil pair synzip5:synzip6
63 | c3m9bK_ |
| not modelled | 10.4 | 10 | PDB header:chaperone Chain: K: PDB Molecule:proteasome-associated atpase; PDBTitle: crystal structure of the amino terminal coiled coil domain and the2 inter domain of the mycobacterium tuberculosis proteasomal atpase mpa
64 | c1ic2B_ |
| not modelled | 9.8 | 19 | PDB header:contractile protein Chain: B: PDB Molecule:tropomyosin alpha chain, skeletal muscle; PDBTitle: deciphering the design of the tropomyosin molecule
65 | d1z0kb1 |
| not modelled | 9.7 | 9 | Fold:Long alpha-hairpin Superfamily:Rabenosyn-5 Rab-binding domain-like Family:Rabenosyn-5 Rab-binding domain-like
66 | c1ci6A_ |
| not modelled | 9.7 | 12 | PDB header:transcription Chain: A: PDB Molecule:transcription factor atf-4; PDBTitle: transcription factor atf4-c/ebp beta bzip heterodimer
67 | c2jy5A_ |
| not modelled | 9.7 | 40 | PDB header:signaling protein Chain: A: PDB Molecule:ubiquilin-1; PDBTitle: nmr structure of ubiquilin 1 uba domain
68 | c1fosF_ |
| not modelled | 9.6 | 10 | PDB header:transcription/dna Chain: F: PDB Molecule:c-jun proto-oncogene protein; PDBTitle: two human c-fos:c-jun:dna complexes
69 | c2hpcF_ |
| not modelled | 9.3 | 12 | PDB header:blood clotting Chain: F: PDB Molecule:fibrinogen, gamma polypeptide; PDBTitle: crystal structure of fragment d from human fibrinogen complexed with2 gly-pro-arg-pro-amide.
70 | c1sjjB_ |
| not modelled | 9.2 | 6 | PDB header:contractile protein Chain: B: PDB Molecule:actinin; PDBTitle: cryo-em structure of chicken gizzard smooth muscle alpha-2 actinin
71 | c2wukD_ |
| not modelled | 9.2 | 18 | PDB header:cell cycle Chain: D: PDB Molecule:septum site-determining protein diviva; PDBTitle: diviva n-terminal domain, f17a mutant
72 | c3layF_ |
| not modelled | 9.0 | 11 | PDB header:metal binding protein Chain: F: PDB Molecule:zinc resistance-associated protein; PDBTitle: alpha-helical barrel formed by the decamer of the zinc resistance-2 associated protein (stm4172) from salmonella enterica subsp. enterica3 serovar typhimurium str. lt2
73 | d1lvfa_ |
| not modelled | 8.9 | 18 | Fold:STAT-like Superfamily:t-snare proteins Family:t-snare proteins
74 | c3p8cD_ |
| not modelled | 8.8 | 10 | PDB header:protein binding Chain: D: PDB Molecule:wiskott-aldrich syndrome protein family member 1; PDBTitle: structure and control of the actin regulatory wave complex
75 | c2kxoA_ |
| not modelled | 8.8 | 14 | PDB header:cell cycle Chain: A: PDB Molecule:cell division topological specificity factor; PDBTitle: solution nmr structure of the cell division regulator mine protein2 from neisseria gonorrhoeae
76 | c1jccC_ |
| not modelled | 8.7 | 13 | PDB header:membrane protein Chain: C: PDB Molecule:major outer membrane lipoprotein; PDBTitle: crystal structure of a novel alanine-zipper trimer at 1.7 a2 resolution, v13a,l16a,v20a,l23a,v27a,m30a,v34a mutations
77 | c1gd2G_ |
| not modelled | 8.6 | 15 | PDB header:transcription/dna Chain: G: PDB Molecule:transcription factor pap1; PDBTitle: crystal structure of bzip transcription factor pap1 bound2 to dna
78 | d2dnaa1 |
| not modelled | 8.6 | 30 | Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain
79 | d1fxkc_ |
| not modelled | 8.5 | 19 | Fold:Long alpha-hairpin Superfamily:Prefoldin Family:Prefoldin
80 | c3og02_ |
| not modelled | 8.4 | 33 | PDB header:ribosome Chain: 2: PDB Molecule:50s ribosomal protein l34; PDBTitle: crystal structure of the e. coli ribosome bound to clindamycin. this2 file contains the 50s subunit of the second 70s ribosome.
81 | c1t2kD_ |
| not modelled | 8.4 | 15 | PDB header:transcription/dna Chain: D: PDB Molecule:cyclic-amp-dependent transcription factor atf-2; PDBTitle: structure of the dna binding domains of irf3, atf-2 and jun2 bound to dna
82 | c1novE_ |
| not modelled | 8.3 | 21 | PDB header:virus Chain: E: PDB Molecule:nodamura virus coat proteins; PDBTitle: nodamura virus
83 | d1k8ib2 |
| not modelled | 8.1 | 38 | Fold:MHC antigen-recognition domain Superfamily:MHC antigen-recognition domain Family:MHC antigen-recognition domain
84 | c1htmB_ |
| not modelled | 8.1 | 13 | PDB header:viral protein Chain: B: PDB Molecule:hemagglutinin ha2 chain; PDBTitle: structure of influenza haemagglutinin at the ph of membrane2 fusion
85 | c3qw3B_ |
| not modelled | 8.1 | 17 | PDB header:transferase, lyase Chain: B: PDB Molecule:orotidine-5-phosphate decarboxylase/orotate PDBTitle: structure of leishmania donovani omp decarboxylase
86 | c2dahA_ |
| not modelled | 8.1 | 40 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:ubiquilin-3; PDBTitle: solution structure of the c-terminal uba domain in the2 human ubiquilin 3
87 | d1yzma1 |
| not modelled | 8.1 | 8 | Fold:Long alpha-hairpin Superfamily:Rabenosyn-5 Rab-binding domain-like Family:Rabenosyn-5 Rab-binding domain-like
88 | c2zdiC_ |
| not modelled | 8.0 | 13 | PDB header:chaperone Chain: C: PDB Molecule:prefoldin subunit alpha; PDBTitle: crystal structure of prefoldin from pyrococcus horikoshii2 ot3
89 | c2no2A_ |
| not modelled | 7.9 | 14 | PDB header:cell adhesion Chain: A: PDB Molecule:huntingtin-interacting protein 1; PDBTitle: crystal structure of the dllrkn-containing coiled-coil2 domain of huntingtin-interacting protein 1
90 | c3cvfA_ |
| not modelled | 7.7 | 18 | PDB header:signaling protein Chain: A: PDB Molecule:homer protein homolog 3; PDBTitle: crystal structure of the carboxy terminus of homer3
91 | c3orb2_ |
| not modelled | 7.7 | 33 | PDB header:ribosome Chain: 2: PDB Molecule:50s ribosomal protein l34; PDBTitle: crystal structure of the e. coli ribosome bound to cem-101. this file2 contains the 50s subunit of the first 70s ribosome bound to cem-101.
92 | c3onjA_ |
| not modelled | 7.6 | 13 | PDB header:protein transport Chain: A: PDB Molecule:t-snare vti1; PDBTitle: crystal structure of yeast vti1p_habc domain
93 | c3g67A_ |
| not modelled | 7.6 | 11 | PDB header:signaling protein Chain: A: PDB Molecule:methyl-accepting chemotaxis protein; PDBTitle: crystal structure of a soluble chemoreceptor from thermotoga2 maritima
94 | c2cwbA_ |
| not modelled | 7.5 | 30 | PDB header:protein binding Chain: A: PDB Molecule:chimera of immunoglobulin g binding protein g PDBTitle: solution structure of the ubiquitin-associated domain of2 human bmsc-ubp and its complex with ubiquitin
95 | d1khia2 |
| not modelled | 7.5 | 10 | Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like
96 | c1kddC_ |
| not modelled | 7.4 | 19 | PDB header:de novo protein Chain: C: PDB Molecule:gcn4 acid base heterodimer acid-d12la16i; PDBTitle: x-ray structure of the coiled coil gcn4 acid base2 heterodimer acid-d12la16i base-d12la16l
97 | d1vcsa1 |
| not modelled | 7.4 | 7 | Fold:STAT-like Superfamily:t-snare proteins Family:t-snare proteins
98 | c1wr1B_ |
| not modelled | 7.3 | 30 | PDB header:signaling protein Chain: B: PDB Molecule:ubiquitin-like protein dsk2; PDBTitle: the complex sturcture of dsk2p uba with ubiquitin
99 | d1veja1 |
| not modelled | 7.3 | 30 | Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain