Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	N	L	D	D	I	I	N	S	M	M	P	E	V	Y	Q	R	L	S	T	A	V	E	L	G	K	W	P	D	G	V	A	L	T	E	E	Q	K	E	N	C	L	Q	L	V	M	L	W	Q	A	R	H	N	I	E	A	Q	H	M	T
Secondary structure
SS confidence
Disorder		?	?																												?		?	?	?																		?	?	?	?		?		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
Sequence		I	D	T	N	G	Q	M	V	M	K	S	K	Q	Q	L	K	E	D	F	G	I	S	A	K	P	I	A	M	F	K
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?		?	?	?	?								?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3ihu chain A Region: 9 - 41 Aligned: 31 Modelled: 33 Confidence: 87.3% Identity: 26% PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, gntr family; PDBTitle: crystal structure of dna binding protein (yp_298823.1) from ralstonia2 eutropha jmp134 at 1.92 a resolution Phyre2 PDB 3fms chain A Region: 7 - 41 Aligned: 33 Modelled: 35 Confidence: 83.0% Identity: 18% PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, gntr family; PDBTitle: crystal structure of tm0439, a gntr transcriptional2 regulator Phyre2 PDB 2hs5 chain A domain 1 Region: 9 - 44 Aligned: 34 Modelled: 36 Confidence: 82.5% Identity: 29% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: GntR-like transcriptional regulators Phyre2 PDB 3c7j chain A Region: 14 - 43 Aligned: 28 Modelled: 30 Confidence: 82.1% Identity: 32% PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, gntr family; PDBTitle: crystal structure of transcriptional regulator (gntr family member)2 from pseudomonas syringae pv. tomato str. dc3000 Phyre2 PDB 2hs5 chain A Region: 9 - 41 Aligned: 31 Modelled: 33 Confidence: 77.9% Identity: 29% PDB header:transcription regulator Chain: A: PDB Molecule:putative transcriptional regulator gntr; PDBTitle: structural genomics, the crystal structure of a putative2 transcriptional regulator gntr from rhodococcus sp. rha1 Phyre2 PDB 3tqn chain C Region: 14 - 43 Aligned: 29 Modelled: 30 Confidence: 74.6% Identity: 10% PDB header:transcription Chain: C: PDB Molecule:transcriptional regulator, gntr family; PDBTitle: structure of the transcriptional regulator of the gntr family, from2 coxiella burnetii. Phyre2 PDB 3bwg chain A domain 1 Region: 13 - 37 Aligned: 25 Modelled: 25 Confidence: 67.3% Identity: 20% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: GntR-like transcriptional regulators Phyre2 PDB 3by6 chain C Region: 13 - 42 Aligned: 30 Modelled: 30 Confidence: 64.5% Identity: 10% PDB header:transcription regulator Chain: C: PDB Molecule:predicted transcriptional regulator; PDBTitle: crystal structure of a transcriptional regulator from oenococcus oeni Phyre2 PDB 1hw1 chain A domain 1 Region: 14 - 37 Aligned: 24 Modelled: 24 Confidence: 57.2% Identity: 17% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: GntR-like transcriptional regulators Phyre2 PDB 3neu chain A Region: 13 - 37 Aligned: 25 Modelled: 25 Confidence: 56.9% Identity: 12% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:lin1836 protein; PDBTitle: the crystal structure of a functionally-unknown protein lin1836 from2 listeria innocua clip11262 Phyre2 PDB 2du9 chain A Region: 14 - 37 Aligned: 24 Modelled: 24 Confidence: 56.4% Identity: 4% PDB header:transcription Chain: A: PDB Molecule:predicted transcriptional regulators; PDBTitle: crystal structure of the transcriptional factor from c.glutamicum Phyre2 PDB 3bwg chain A Region: 14 - 36 Aligned: 23 Modelled: 23 Confidence: 53.7% Identity: 17% PDB header:transcription regulator Chain: A: PDB Molecule:uncharacterized hth-type transcriptional regulator yydk; PDBTitle: the crystal structure of possible transcriptional regulator yydk from2 bacillus subtilis subsp. subtilis str. 168 Phyre2 PDB 1v4r chain A domain 1 Region: 13 - 37 Aligned: 25 Modelled: 25 Confidence: 52.3% Identity: 20% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: GntR-like transcriptional regulators Phyre2 PDB 1e2x chain A Region: 14 - 35 Aligned: 22 Modelled: 22 Confidence: 51.7% Identity: 18% PDB header:transcriptional regulation Chain: A: PDB Molecule:fatty acid metabolism regulator protein; PDBTitle: fadr, fatty acid responsive transcription factor from e.2 coli Phyre2 PDB 2di3 chain A Region: 14 - 37 Aligned: 24 Modelled: 24 Confidence: 51.4% Identity: 21% PDB header:transcription Chain: A: PDB Molecule:bacterial regulatory proteins, gntr family; PDBTitle: crystal structure of the transcriptional factor cgl29152 from corynebacterium glutamicum Phyre2 PDB 2je2 chain A Region: 11 - 33 Aligned: 20 Modelled: 23 Confidence: 48.0% Identity: 30% PDB header:metal binding protein Chain: A: PDB Molecule:cytochrome p460; PDBTitle: cytochrome p460 from nitrosomonas europaea - probable2 nonphysiological oxidized form Phyre2 PDB 3eet chain A Region: 13 - 36 Aligned: 24 Modelled: 24 Confidence: 42.3% Identity: 21% PDB header:transcription regulator Chain: A: PDB Molecule:putative gntr-family transcriptional regulator; PDBTitle: crystal structure of putative gntr-family transcriptional2 regulator Phyre2 PDB 3ic7 chain A Region: 14 - 34 Aligned: 21 Modelled: 21 Confidence: 41.0% Identity: 14% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative transcriptional regulator; PDBTitle: crystal structure of putative transcriptional regulator of gntr family2 from bacteroides thetaiotaomicron Phyre2 PDB 1zlq chain A domain 1 Region: 26 - 46 Aligned: 21 Modelled: 21 Confidence: 38.7% Identity: 19% Fold: Periplasmic binding protein-like II Superfamily: Periplasmic binding protein-like II Family: Phosphate binding protein-like Phyre2 PDB 2d3q chain A domain 1 Region: 10 - 34 Aligned: 25 Modelled: 25 Confidence: 38.3% Identity: 16% Fold: Ferredoxin-like Superfamily: Dimeric alpha+beta barrel Family: Dyp-type peroxidase-like Phyre2 1 c3ihuA_ 2 c3fmsA_ 3 d2hs5a1 4 c3c7jA_ 5 c2hs5A_ 6 c3tqnC_ 7 d3bwga1 8 c3by6C_ 9 d1hw1a1 10 c3neuA_ 11 c2du9A_ 12 c3bwgA_ 13 d1v4ra1 14 c1e2xA_ 15 c2di3A_ 16 c2je2A_ 17 c3eetA_ 18 c3ic7A_ 19 d1zlqa1 20 d2d3qa1 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3ihuA_ 87.3 26 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, gntr family; PDBTitle: crystal structure of dna binding protein (yp_298823.1) from ralstonia2 eutropha jmp134 at 1.92 a resolution 2 c3fmsA_ 83.0 18 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, gntr family; PDBTitle: crystal structure of tm0439, a gntr transcriptional2 regulator 3 d2hs5a1 82.5 29 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:GntR-like transcriptional regulators 4 c3c7jA_ 82.1 32 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, gntr family; PDBTitle: crystal structure of transcriptional regulator (gntr family member)2 from pseudomonas syringae pv. tomato str. dc3000 5 c2hs5A_ 77.9 29 PDB header:transcription regulator Chain: A: PDB Molecule:putative transcriptional regulator gntr; PDBTitle: structural genomics, the crystal structure of a putative2 transcriptional regulator gntr from rhodococcus sp. rha1 6 c3tqnC_ 74.6 10 PDB header:transcription Chain: C: PDB Molecule:transcriptional regulator, gntr family; PDBTitle: structure of the transcriptional regulator of the gntr family, from2 coxiella burnetii. 7 d3bwga1 67.3 20 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:GntR-like transcriptional regulators 8 c3by6C_ 64.5 10 PDB header:transcription regulator Chain: C: PDB Molecule:predicted transcriptional regulator; PDBTitle: crystal structure of a transcriptional regulator from oenococcus oeni 9 d1hw1a1 57.2 17 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:GntR-like transcriptional regulators 10 c3neuA_ 56.9 12 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:lin1836 protein; PDBTitle: the crystal structure of a functionally-unknown protein lin1836 from2 listeria innocua clip11262 11 c2du9A_ 56.4 4 PDB header:transcription Chain: A: PDB Molecule:predicted transcriptional regulators; PDBTitle: crystal structure of the transcriptional factor from c.glutamicum 12 c3bwgA_ 53.7 17 PDB header:transcription regulator Chain: A: PDB Molecule:uncharacterized hth-type transcriptional regulator yydk; PDBTitle: the crystal structure of possible transcriptional regulator yydk from2 bacillus subtilis subsp. subtilis str. 168 13 d1v4ra1 52.3 20 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:GntR-like transcriptional regulators 14 c1e2xA_ 51.7 18 PDB header:transcriptional regulation Chain: A: PDB Molecule:fatty acid metabolism regulator protein; PDBTitle: fadr, fatty acid responsive transcription factor from e.2 coli 15 c2di3A_ 51.4 21 PDB header:transcription Chain: A: PDB Molecule:bacterial regulatory proteins, gntr family; PDBTitle: crystal structure of the transcriptional factor cgl29152 from corynebacterium glutamicum 16 c2je2A_ 48.0 30 PDB header:metal binding protein Chain: A: PDB Molecule:cytochrome p460; PDBTitle: cytochrome p460 from nitrosomonas europaea - probable2 nonphysiological oxidized form 17 c3eetA_ 42.3 21 PDB header:transcription regulator Chain: A: PDB Molecule:putative gntr-family transcriptional regulator; PDBTitle: crystal structure of putative gntr-family transcriptional2 regulator 18 c3ic7A_ 41.0 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative transcriptional regulator; PDBTitle: crystal structure of putative transcriptional regulator of gntr family2 from bacteroides thetaiotaomicron 19 d1zlqa1 38.7 19 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 20 d2d3qa1 38.3 16 Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:Dyp-type peroxidase-like 21 c3edhA_ not modelled 33.3 40 PDB header:hydrolase Chain: A: PDB Molecule:bone morphogenetic protein 1; PDBTitle: crystal structure of bone morphogenetic protein 1 protease2 domain in complex with partially bound dmso 22 c2wv0H_ not modelled 32.5 20 PDB header:transcription Chain: H: PDB Molecule:hth-type transcriptional repressor yvoa; PDBTitle: crystal structure of the gntr-hutc family member yvoa from2 bacillus subtilis 23 c3t66A_ not modelled 31.0 14 PDB header:transport protein Chain: A: PDB Molecule:nickel abc transporter (nickel-binding protein); PDBTitle: crystal structure of nickel abc transporter from bacillus halodurans 24 c3edpB_ not modelled 30.3 4 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:lin2111 protein; PDBTitle: the crystal structure of the protein lin2111 (functionally unknown)2 from listeria innocua clip11262 25 d3bvua3 not modelled 29.7 8 Fold:7-stranded beta/alpha barrel Superfamily:Glycoside hydrolase/deacetylase Family:alpha-mannosidase 26 d1uqwa_ not modelled 28.9 19 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 27 d1jeta_ not modelled 28.1 29 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 28 c3lf9A_ not modelled 25.0 28 PDB header:immune system Chain: A: PDB Molecule:4e10_d0_1is1a_001_c (t161); PDBTitle: crystal structure of hiv epitope-scaffold 4e10_d0_1is1a_001_c 29 d1nyna_ not modelled 22.4 30 Fold:FYSH domain Superfamily:FYSH domain Family:Hypothetical protein Yhr087W 30 c3rqtA_ not modelled 21.6 27 PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: 1.5 angstrom crystal structure of the complex of ligand binding2 component of abc-type import system from staphylococcus aureus with3 nickel and two histidines 31 c3o9pA_ not modelled 21.2 29 PDB header:peptide binding protein/peptide Chain: A: PDB Molecule:periplasmic murein peptide-binding protein; PDBTitle: the structure of the escherichia coli murein tripeptide binding2 protein mppa 32 d1lbua1 not modelled 20.9 10 Fold:PGBD-like Superfamily:PGBD-like Family:Peptidoglycan binding domain, PGBD 33 c3ry3B_ not modelled 20.1 24 PDB header:transport protein Chain: B: PDB Molecule:putative solute-binding protein; PDBTitle: putative solute-binding protein from yersinia pestis. 34 c2wokA_ not modelled 19.2 24 PDB header:peptide binding protein/peptide Chain: A: PDB Molecule:clavulanic acid biosynthesis oligopeptide PDBTitle: clavulanic acid biosynthesis oligopeptide2 binding protein 2 complexed with bradykinin 35 c1ztyA_ not modelled 19.2 32 PDB header:sugar binding protein, signaling protein Chain: A: PDB Molecule:chitin oligosaccharide binding protein; PDBTitle: crystal structure of the chitin oligasaccharide binding2 protein 36 d1asta_ not modelled 18.9 16 Fold:Zincin-like Superfamily:Metalloproteases ("zincins"), catalytic domain Family:Astacin 37 c3ftoA_ not modelled 17.0 29 PDB header:peptide binding protein Chain: A: PDB Molecule:oligopeptide-binding protein oppa; PDBTitle: crystal structure of oppa in a open conformation 38 c2grvC_ not modelled 16.9 9 PDB header:biosynthetic protein Chain: C: PDB Molecule:lpqw; PDBTitle: crystal structure of lpqw 39 d1xoca1 not modelled 16.5 24 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 40 d1vr5a1 not modelled 16.5 29 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 41 c2o7jA_ not modelled 16.2 30 PDB header:sugar binding protein Chain: A: PDB Molecule:oligopeptide abc transporter, periplasmic PDBTitle: the x-ray crystal structure of a thermophilic cellobiose2 binding protein bound with cellopentaose 42 c3fxeA_ not modelled 15.9 46 PDB header:unknown function Chain: A: PDB Molecule:protein icmq; PDBTitle: crystal structure of interacting domains of icmr and icmq (seleno-2 derivative) 43 c1o7dA_ not modelled 15.8 8 PDB header:hydrolase Chain: A: PDB Molecule:lysosomal alpha-mannosidase; PDBTitle: the structure of the bovine lysosomal a-mannosidase2 suggests a novel mechanism for low ph activation 44 c2ztbB_ not modelled 14.9 33 PDB header:toxin Chain: B: PDB Molecule:crystal protein; PDBTitle: crystal structure of the parasporin-2 bacillus thuringiensis toxin2 that recognizes cancer cells 45 c3fiqA_ not modelled 14.9 17 PDB header:transport protein Chain: A: PDB Molecule:odorant-binding protein 1f; PDBTitle: odorant binding protein obp1 46 c3itfA_ not modelled 14.7 50 PDB header:signaling protein Chain: A: PDB Molecule:periplasmic adaptor protein cpxp; PDBTitle: structural basis for the inhibitory function of the cpxp adaptor2 protein 47 d1qh4a1 not modelled 13.2 14 Fold:Guanido kinase N-terminal domain Superfamily:Guanido kinase N-terminal domain Family:Guanido kinase N-terminal domain 48 d1cola_ not modelled 13.2 27 Fold:Toxins' membrane translocation domains Superfamily:Colicin Family:Colicin 49 c3oeoD_ not modelled 12.9 63 PDB header:signaling protein Chain: D: PDB Molecule:spheroplast protein y; PDBTitle: the crystal structure e. coli spy 50 c3o39A_ not modelled 12.5 63 PDB header:chaperone Chain: A: PDB Molecule:periplasmic protein related to spheroblast formation; PDBTitle: crystal structure of spy 51 c3lqbA_ not modelled 12.4 27 PDB header:hydrolase Chain: A: PDB Molecule:loc792177 protein; PDBTitle: crystal structure of the hatching enzyme zhe1 from the zebrafish danio2 rerio 52 d1qk1a1 not modelled 12.1 36 Fold:Guanido kinase N-terminal domain Superfamily:Guanido kinase N-terminal domain Family:Guanido kinase N-terminal domain 53 d1rh1a2 not modelled 11.9 13 Fold:Toxins' membrane translocation domains Superfamily:Colicin Family:Colicin 54 c2da4A_ not modelled 11.8 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein dkfzp686k21156; PDBTitle: solution structure of the homeobox domain of the2 hypothetical protein, dkfzp686k21156 55 d1g0wa1 not modelled 11.6 29 Fold:Guanido kinase N-terminal domain Superfamily:Guanido kinase N-terminal domain Family:Guanido kinase N-terminal domain 56 c3qzcA_ not modelled 11.5 50 PDB header:signaling protein Chain: A: PDB Molecule:periplasmic protein cpxp; PDBTitle: structure of the periplasmic stress response protein cpxp 57 c1wnmA_ not modelled 11.3 18 PDB header:transcription Chain: A: PDB Molecule:fibroin-modulator binding-protein-1; PDBTitle: nmr structure of fmbp-1 tandem repeat 2 in 30%(v/v) tfe2 solution 58 c2i88A_ not modelled 11.1 20 PDB header:membrane protein Chain: A: PDB Molecule:colicin-e1; PDBTitle: crystal structure of the channel-forming domain of colicin2 e1 59 d1ciia1 not modelled 11.0 20 Fold:Toxins' membrane translocation domains Superfamily:Colicin Family:Colicin 60 c2k0mA_ not modelled 11.0 9 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution nmr structure of the uncharacterized protein from2 rhodospirillum rubrum gene locus rru_a0810. northeast3 structural genomics target rrr43 61 d1hq1a_ not modelled 10.9 45 Fold:Signal peptide-binding domain Superfamily:Signal peptide-binding domain Family:Signal peptide-binding domain 62 c1wnkA_ not modelled 10.5 27 PDB header:transcription Chain: A: PDB Molecule:fibroin-modulator-binding-protein-1; PDBTitle: nmr structure of fmbp-1 tandem repeat 3 in 30%(v/v) tfe2 solution 63 d1uoua1 not modelled 10.4 26 Fold:Methionine synthase domain-like Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain 64 c3rnvA_ not modelled 10.4 100 PDB header:hydrolase Chain: A: PDB Molecule:helper component proteinase; PDBTitle: structure of the autocatalytic cysteine protease domain of potyvirus2 helper-component proteinase 65 d2qqsa2 not modelled 10.4 50 Fold:SH3-like barrel Superfamily:Tudor/PWWP/MBT Family:Tudor domain 66 c3h01A_ not modelled 10.1 17 PDB header:viral protein Chain: A: PDB Molecule:envelope glycoprotein gp160; PDBTitle: structure of the c-terminal domain of a putative hiv-1 gp412 fusion intermediate 67 d1a87a_ not modelled 10.0 13 Fold:Toxins' membrane translocation domains Superfamily:Colicin Family:Colicin 68 c1a87A_ not modelled 10.0 13 PDB header:bacteriocin Chain: A: PDB Molecule:colicin n; PDBTitle: colicin n 69 d1m15a1 not modelled 10.0 7 Fold:Guanido kinase N-terminal domain Superfamily:Guanido kinase N-terminal domain Family:Guanido kinase N-terminal domain 70 c2d5wA_ not modelled 10.0 29 PDB header:peptide binding protein Chain: A: PDB Molecule:peptide abc transporter, peptide-binding protein; PDBTitle: the crystal structure of oligopeptide binding protein from thermus2 thermophilus hb8 complexed with pentapeptide 71 d1dula_ not modelled 9.9 36 Fold:Signal peptide-binding domain Superfamily:Signal peptide-binding domain Family:Signal peptide-binding domain 72 d1crka1 not modelled 9.9 21 Fold:Guanido kinase N-terminal domain Superfamily:Guanido kinase N-terminal domain Family:Guanido kinase N-terminal domain 73 d2c42a2 not modelled 9.8 60 Fold:Thiamin diphosphate-binding fold (THDP-binding) Superfamily:Thiamin diphosphate-binding fold (THDP-binding) Family:PFOR PP module 74 d1i0ea1 not modelled 9.8 21 Fold:Guanido kinase N-terminal domain Superfamily:Guanido kinase N-terminal domain Family:Guanido kinase N-terminal domain 75 d1k1xa3 not modelled 9.7 20 Fold:7-stranded beta/alpha barrel Superfamily:Glycoside hydrolase/deacetylase Family:4-alpha-glucanotransferase, N-terminal domain 76 d1vrpa1 not modelled 9.5 14 Fold:Guanido kinase N-terminal domain Superfamily:Guanido kinase N-terminal domain Family:Guanido kinase N-terminal domain 77 c2wyhA_ not modelled 9.3 33 PDB header:hydrolase Chain: A: PDB Molecule:alpha-mannosidase; PDBTitle: structure of the streptococcus pyogenes family gh38 alpha-2 mannosidase 78 d1u6ra1 not modelled 9.3 21 Fold:Guanido kinase N-terminal domain Superfamily:Guanido kinase N-terminal domain Family:Guanido kinase N-terminal domain 79 c3cyoA_ not modelled 9.2 19 PDB header:viral protein Chain: A: PDB Molecule:transmembrane protein; PDBTitle: structure of a longer thermalstable core domain of hiv-12 gp41 containing the enfuvirtide resistance mutation n43d3 and complementary mutation e137k 80 c2ba0I_ not modelled 8.9 21 PDB header:rna binding protein Chain: I: PDB Molecule:archeal exosome rna binding protein rrp42; PDBTitle: archaeal exosome core 81 d1lv3a_ not modelled 8.8 25 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Hypothetical zinc finger protein YacG 82 d2tpta1 not modelled 8.7 28 Fold:Methionine synthase domain-like Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain 83 c3qiiA_ not modelled 8.2 38 PDB header:transcription regulator Chain: A: PDB Molecule:phd finger protein 20; PDBTitle: crystal structure of tudor domain 2 of human phd finger protein 20 84 c2ow7A_ not modelled 8.0 8 PDB header:hydrolase Chain: A: PDB Molecule:alpha-mannosidase 2; PDBTitle: golgi alpha-mannosidase ii complex with (1r,6s,7r,8s)-1-2 thioniabicyclo[4.3.0]nonan-7,8-diol chloride 85 d1chka_ not modelled 7.8 25 Fold:Lysozyme-like Superfamily:Lysozyme-like Family:Chitosanase 86 d2qqra2 not modelled 7.8 50 Fold:SH3-like barrel Superfamily:Tudor/PWWP/MBT Family:Tudor domain 87 c3fewX_ not modelled 7.7 27 PDB header:immune system Chain: X: PDB Molecule:colicin s4; PDBTitle: structure and function of colicin s4, a colicin with a2 duplicated receptor binding domain 88 c2ex3I_ not modelled 7.7 25 PDB header:transferase/replication Chain: I: PDB Molecule:dna polymerase; PDBTitle: bacteriophage phi29 dna polymerase bound to terminal protein 89 c1i5xA_ not modelled 7.7 19 PDB header:viral protein Chain: A: PDB Molecule:transmembrane glycoprotein (gp41); PDBTitle: hiv-1 gp41 core 90 d1z9ha1 not modelled 7.7 24 Fold:GST C-terminal domain-like Superfamily:GST C-terminal domain-like Family:Glutathione S-transferase (GST), C-terminal domain 91 d1stfi_ not modelled 7.4 17 Fold:Cystatin-like Superfamily:Cystatin/monellin Family:Cystatins 92 c2o61A_ not modelled 7.2 50 PDB header:transcription/dna Chain: A: PDB Molecule:transcription factor p65/interferon regulatory factor PDBTitle: crystal structure of nfkb, irf7, irf3 bound to the interferon-b2 enhancer 93 d1o17a1 not modelled 7.0 11 Fold:Methionine synthase domain-like Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain 94 c3letB_ not modelled 7.0 28 PDB header:transferase Chain: B: PDB Molecule:adenosine monophosphate-protein transferase vops; PDBTitle: crystal structure of fic domain containing ampylator, vops 95 d2ffha2 not modelled 7.0 55 Fold:Signal peptide-binding domain Superfamily:Signal peptide-binding domain Family:Signal peptide-binding domain 96 d1zela2 not modelled 6.7 25 Fold:Rv2827c C-terminal domain-like Superfamily:Rv2827c C-terminal domain-like Family:Rv2827c C-terminal domain-like 97 c2nn6E_ not modelled 6.7 11 PDB header:hydrolase/transferase Chain: E: PDB Molecule:exosome complex exonuclease rrp42; PDBTitle: structure of the human rna exosome composed of rrp41, rrp45,2 rrp46, rrp43, mtr3, rrp42, csl4, rrp4, and rrp40 98 c3epvB_ not modelled 6.5 25 PDB header:metal binding protein Chain: B: PDB Molecule:nickel and cobalt resistance protein cnrr; PDBTitle: x-ray structure of the metal-sensor cnrx in both the apo- and copper-2 bound forms 99 d1f46a_ not modelled 6.5 4 Fold:TBP-like Superfamily:Cell-division protein ZipA, C-terminal domain Family:Cell-division protein ZipA, C-terminal domain

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0