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  Protein Homology/analogY Recognition Engine V 2.2
 

Fold library entry viewer: c2o61A_

Fold library idPDB HeaderMoleculeTitle
c2o61A_PDB header: transcription/dnaChain: A: PDB Molecule: transcription factor p65/interferon regulatoryPDBTitle: crystal structure of nfkb, irf7, irf3 bound to the2 interferon-b enhancer


Added to library: Tue Mar 16 14:11:04 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence GYVEIIEQPKQRGMRFRYKCEGRSAGSIPGERSTDTTKTHPTIKINGYTGPGTVRISLVTKDPPHRPHPH
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Known secondary structure (DSSP)

B

SS


TTT
S





BTT

SS




T

SS

SSSS

B
SS
 .........80.........90.........100.........110.........120.........130.........140
Sequence ELVGKDCRDGFYEAELCPDRCIHSFQNLGIQCVKKRDLEQAISQRIQTNNNPFQVPIEEQRGDYDLNAVR
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Known secondary structure (DSSP) STTTT

TT
S





GGGTT

TT


TTTT
S


TT
 .........150.........160.........170.........180.........190.........200.........210
Sequence LCFQVTVRDPSGRPLRLPPVLSHPIFDNRAPNTAELKICRVNRNSGSCLGGDEIFLLCDKVQKEDIEVYF
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Known secondary structure (DSSP) SSSSS






SSSTTSS


S
STT


SS
BTTB
 .........220.........230.........240.........250.........260.........270.........280
Sequence TGPGWEARGSFSQADVHRQVAIVFRTPPYADPSLQAPVRVSMQLRRPSDRELSEPMEFQYLPDAAPRVLF
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Known secondary structure (DSSP) TT
B

GGGTTT



SSS

SS

GGG

B










 .........290.........300.........310.........320.........330.........340.........350
Sequence GEWLLGEISSGCYEGLQWLDEARTCFRVPWKHFARKDLSEADARIFKAWAVARGRWPPSSRPPPEAETAE
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Known secondary structure (DSSP) T
STT
SSSS




TT
TT

TGGGTTSS







ST
 .........360.........370.........380.........390.........400.........410.........420
Sequence RAGWKTNFRCALRSTRRFVMLRDNSGDPADQHKVYALSGSLSSDSLPWLVSQLDLGQLEGVAWVNKSRTR
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Known secondary structure (DSSP)

S
STTS
SSSS






STT
S
TTSS
 .........430.........440.........450.........460.........470.........480.........490
Sequence FRIPWKHGLRQDAQQEDFGIFQAWAEATGAYVPGRDKPDLPTWKRNFRSALNRKEGLRLAEDRSKDPHDP
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Known secondary structure (DSSP)


TT
TT

TGGGTTTS

SSSS


TT
SSTS
SSS
 ........
Sequence HKIYEFVN
Predicted secondary structure

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Known secondary structure (DSSP)


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction
Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960
 
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