Standard Mode | Switch to Expert Mode | Login to view past jobsRetrieve Phyre Job Id
 
Subscribe to Phyre at Google Groups
Email:
Visit Phyre at Google Groups
  Protein Homology/analogY Recognition Engine V 2.2
 

Fold library entry viewer: c3o9pA_

Fold library idPDB HeaderMoleculeTitle
c3o9pA_PDB header: peptide binding protein/peptideChain: A: PDB Molecule: periplasmic murein peptide-binding protein;PDBTitle: the structure of the escherichia coli murein tripeptide binding2 protein mppa


Added to library: Sat Jul 9 10:14:16 2011
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence TVLAEKQELVRHIKDEPASLDPAKAVGLPEIQVIRDLFEGLVNQNEKGEIVPGVATQWKSNDNRIWTFTL
Predicted secondary structure
































SS confidence





































































Known secondary structure (DSSP)

B
S

SS

S
S
TTT

S


S
TTS
SS
SSSS
 .........80.........90.........100.........110.........120.........130.........140
Sequence RDNAKWADGTPVTAQDFVYSWQRLVDPKTLSPFAWFAALAGINNAQAIIDGKATPDQLGVTAVDAHTLKI
Predicted secondary structure



































SS confidence





































































Known secondary structure (DSSP)
TT
B
TTS
B


GGG

TTTTBTTTTSS
GGGSSTT
 .........150.........160.........170.........180.........190.........200.........210
Sequence QLDKPLPWFVNLTANFAFFPVQKANVESGKEWTKPGNLIGNGAYVLKERVVNEKLVVVPNTHYWDNAKTV
Predicted secondary structure











































SS confidence





































































Known secondary structure (DSSP) BSS

TTTSGGG



T
TTTTSTTT


SSSTTT
TTSTTGGG

 .........220.........230.........240.........250.........260.........270.........280
Sequence LQKVTFLPINQESAATKRYLAGDIDITESFPKNMYQKLLKDIPGQVYTPPQLGTYYYAFNTQKGPTADQR
Predicted secondary structure



























SS confidence





































































Known secondary structure (DSSP)
S


TS
SB
S


GGGSTTS


TTSSGGGS
 .........290.........300.........310.........320.........330.........340.........350
Sequence VRLALSMTIDRRLMTEKVLGTGEKPAWHFTPDVTAGFTPEPSPFEQMSQEELNAQAKTLLSAAGYGPQKP
Predicted secondary structure
































SS confidence





































































Known secondary structure (DSSP) S
TT
SS

SSSS
TTSTT





S
T
BTTB
 .........360.........370.........380.........390.........400.........410.........420
Sequence LKLTLLYNTSENHQKIAIAVASMWKKNLGVDVKLQNQEWKTYIDSRNTGNFDVIRASWVGDYNEPSTFLT
Predicted secondary structure





















SS confidence





































































Known secondary structure (DSSP)
S



TTSS

S
SSSSTG
 .........430.........440.........450.........460.........470.........480.........490
Sequence LLTSTHSGNISRFNNPAYDKVLAQASTENTVKARNADYNAAEKILMEQAPIAPIYQYTNGRLIKPWLKGY
Predicted secondary structure






















SS confidence





































































Known secondary structure (DSSP) GGSTT
TT
TT



TT

S
S

B
TT

 .........500.........
Sequence PINNPEDVAYSRTMYIVKH
Predicted secondary structure







SS confidence


















Known secondary structure (DSSP)
TT
TT



GGG
B


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Accessibility Statement
Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction
Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960
 
© Structural Bioinformatics Group, Imperial College, London
Michael Sternberg  
Disclaimer
Terms and Conditions
Structural Biology Group logo Imperial logo
BBSRC logo
Phyre2 is part of Genome3D