Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP24242
DateWed Jan 25 15:20:45 GMT 2012
Unique Job ID2337c140b0a0e5d7

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c1zvvA_
Top template information
PDB header:transcription/dna
Chain: A: PDB Molecule:glucose-resistance amylase regulator;
PDBTitle: crystal structure of a ccpa-crh-dna complex
Confidence and coverage
Confidence:100.0% Coverage: 98%
328 residues ( 98% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MTTMLEVAKRAGVSKATVSRVLSGNGYVSQETKDRVFQAVEESGYRPNLLARNLSAKSTQ
Secondary structure 






















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Disorder  ???



















??????























??????
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   .........70.........80.........90.........100.........110.........120
Sequence  TLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLADGKHSAEEERQAIQYLLDLRCDA
Secondary structure 



















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Disorder 









?





























?

















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   .........130.........140.........150.........160.........170.........180
Sequence  IMIYPRFLSVDEIDDIIDAHSQPIMVLNRRLRKNSSHSVWCDHKQTSFNAVAELINAGHQ
Secondary structure 
























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Disorder 






?



















































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   .........190.........200.........210.........220.........230.........240
Sequence  EIAFLTGSMDSPTSIERLAGYKDALAQHGIALNEKLIANGKWTPASGAEGVEMLLERGAK
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Disorder 








?

?









































?



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   .........250.........260.........270.........280.........290.........300
Sequence  FSALVASNDDMAIGAMKALHERGVAVPEQVSVIGFDDIAIAPYTVPALSSVKIPVTEMIQ
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   .........310.........320.........330......
Sequence  EIIGRLIFMLDGGDFSPPKTFSGKLIRRDSLIAPSR
Secondary structure 















SS confidence 



































Disorder 









????????











??????
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Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 1zvv chain A

3D model

Region: 1 - 331
Aligned: 328
Modelled: 331
Confidence: 100.0%
Identity: 30%
PDB header:transcription/dna
Chain: A: PDB Molecule:glucose-resistance amylase regulator;
PDBTitle: crystal structure of a ccpa-crh-dna complex

Phyre2

PDB 3kjx chain D

3D model

Region: 1 - 333
Aligned: 330
Modelled: 330
Confidence: 100.0%
Identity: 23%
PDB header:transcription regulator
Chain: D: PDB Molecule:transcriptional regulator, laci family;
PDBTitle: crystal structure of a transcriptional regulator, lacl2 family protein from silicibacter pomeroyi

Phyre2

PDB 1bdh chain A

3D model

Region: 3 - 336
Aligned: 332
Modelled: 334
Confidence: 100.0%
Identity: 26%
PDB header:transcription/dna
Chain: A: PDB Molecule:protein (purine repressor);
PDBTitle: purine repressor mutant-hypoxanthine-palindromic operator2 complex

Phyre2

PDB 3h5t chain A

3D model

Region: 2 - 332
Aligned: 317
Modelled: 326
Confidence: 100.0%
Identity: 20%
PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, laci family;
PDBTitle: crystal structure of a transcriptional regulator, lacl2 family protein from corynebacterium glutamicum

Phyre2

PDB 3dbi chain A

3D model

Region: 58 - 335
Aligned: 278
Modelled: 278
Confidence: 100.0%
Identity: 97%
PDB header:transcription regulator
Chain: A: PDB Molecule:sugar-binding transcriptional regulator, laci family;
PDBTitle: crystal structure of sugar-binding transcriptional regulator (laci2 family) from escherichia coli complexed with phosphate

Phyre2

PDB 3brq chain A

3D model

Region: 59 - 333
Aligned: 271
Modelled: 275
Confidence: 100.0%
Identity: 94%
PDB header:transcription regulator
Chain: A: PDB Molecule:hth-type transcriptional regulator ascg;
PDBTitle: crystal structure of the escherichia coli transcriptional repressor2 ascg

Phyre2

PDB 2iks chain A

3D model

Region: 57 - 332
Aligned: 272
Modelled: 276
Confidence: 100.0%
Identity: 19%
PDB header:transcription
Chain: A: PDB Molecule:dna-binding transcriptional dual regulator;
PDBTitle: crystal structure of n-terminal truncated dna-binding transcriptional2 dual regulator from escherichia coli k12

Phyre2

PDB 3qk7 chain C

3D model

Region: 58 - 336
Aligned: 277
Modelled: 279
Confidence: 100.0%
Identity: 18%
PDB header:transcription regulator
Chain: C: PDB Molecule:transcriptional regulators;
PDBTitle: crystal structure of putative transcriptional regulator from yersinia2 pestis biovar microtus str. 91001

Phyre2

PDB 3k4h chain A

3D model

Region: 58 - 333
Aligned: 274
Modelled: 276
Confidence: 100.0%
Identity: 23%
PDB header:transcription regulator
Chain: A: PDB Molecule:putative transcriptional regulator;
PDBTitle: crystal structure of putative transcriptional regulator laci from2 bacillus cereus subsp. cytotoxis nvh 391-98

Phyre2

PDB 2nzu chain G domain 1

3D model

Region: 57 - 331
Aligned: 272
Modelled: 275
Confidence: 100.0%
Identity: 26%
Fold: Periplasmic binding protein-like I
Superfamily: Periplasmic binding protein-like I
Family: L-arabinose binding protein-like

Phyre2

PDB 3kke chain A

3D model

Region: 61 - 334
Aligned: 270
Modelled: 274
Confidence: 100.0%
Identity: 22%
PDB header:transcription regulator
Chain: A: PDB Molecule:laci family transcriptional regulator;
PDBTitle: crystal structure of a laci family transcriptional regulator2 from mycobacterium smegmatis

Phyre2

PDB 3c3k chain A

3D model

Region: 58 - 331
Aligned: 266
Modelled: 274
Confidence: 100.0%
Identity: 23%
PDB header:isomerase
Chain: A: PDB Molecule:alanine racemase;
PDBTitle: crystal structure of an uncharacterized protein from actinobacillus2 succinogenes

Phyre2

PDB 3d8u chain A

3D model

Region: 60 - 332
Aligned: 264
Modelled: 273
Confidence: 100.0%
Identity: 22%
PDB header:transcription regulator
Chain: A: PDB Molecule:purr transcriptional regulator;
PDBTitle: the crystal structure of a purr family transcriptional regulator from2 vibrio parahaemolyticus rimd 2210633

Phyre2

PDB 3k9c chain A

3D model

Region: 60 - 335
Aligned: 267
Modelled: 276
Confidence: 100.0%
Identity: 25%
PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, laci family protein;
PDBTitle: crystal structure of laci transcriptional regulator from rhodococcus2 species.

Phyre2

PDB 3hcw chain B

3D model

Region: 56 - 333
Aligned: 277
Modelled: 278
Confidence: 100.0%
Identity: 14%
PDB header:rna binding protein
Chain: B: PDB Molecule:maltose operon transcriptional repressor;
PDBTitle: crystal structure of probable maltose operon transcriptional repressor2 malr from staphylococcus areus

Phyre2

PDB 1tlf chain A

3D model

Region: 59 - 336
Aligned: 273
Modelled: 278
Confidence: 100.0%
Identity: 25%
Fold: Periplasmic binding protein-like I
Superfamily: Periplasmic binding protein-like I
Family: L-arabinose binding protein-like

Phyre2

PDB 3h5o chain B

3D model

Region: 60 - 332
Aligned: 268
Modelled: 273
Confidence: 100.0%
Identity: 24%
PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulator gntr;
PDBTitle: the crystal structure of transcription regulator gntr from2 chromobacterium violaceum

Phyre2

PDB 2rgy chain A

3D model

Region: 60 - 333
Aligned: 271
Modelled: 274
Confidence: 100.0%
Identity: 30%
PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, laci family;
PDBTitle: crystal structure of transcriptional regulator of laci family from2 burkhoderia phymatum

Phyre2

PDB 1jye chain A

3D model

Region: 61 - 334
Aligned: 269
Modelled: 274
Confidence: 100.0%
Identity: 25%
PDB header:transcription
Chain: A: PDB Molecule:lactose operon repressor;
PDBTitle: structure of a dimeric lac repressor with c-terminal deletion and k84l2 substitution

Phyre2

PDB 1jye chain A

3D model

Region: 61 - 334
Aligned: 269
Modelled: 274
Confidence: 100.0%
Identity: 25%
Fold: Periplasmic binding protein-like I
Superfamily: Periplasmic binding protein-like I
Family: L-arabinose binding protein-like

Phyre2
1

c1zvvA_
2

c3kjxD_
3

c1bdhA_
4

c3h5tA_
5

c3dbiA_
6

c3brqA_
7

c2iksA_
8

c3qk7C_
9

c3k4hA_
10

d2nzug1
11

c3kkeA_
12

c3c3kA_
13

c3d8uA_
14

c3k9cA_
15

c3hcwB_
16

d1tlfa_
17

c3h5oB_
18

c2rgyA_
19

c1jyeA_
20

d1jyea_
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c1zvvA_



100.0 30 PDB header:transcription/dna
Chain: A: PDB Molecule:glucose-resistance amylase regulator;
PDBTitle: crystal structure of a ccpa-crh-dna complex
2c3kjxD_



100.0 23 PDB header:transcription regulator
Chain: D: PDB Molecule:transcriptional regulator, laci family;
PDBTitle: crystal structure of a transcriptional regulator, lacl2 family protein from silicibacter pomeroyi
3c1bdhA_



100.0 26 PDB header:transcription/dna
Chain: A: PDB Molecule:protein (purine repressor);
PDBTitle: purine repressor mutant-hypoxanthine-palindromic operator2 complex
4c3h5tA_



100.0 20 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, laci family;
PDBTitle: crystal structure of a transcriptional regulator, lacl2 family protein from corynebacterium glutamicum
5c3dbiA_



100.0 97 PDB header:transcription regulator
Chain: A: PDB Molecule:sugar-binding transcriptional regulator, laci family;
PDBTitle: crystal structure of sugar-binding transcriptional regulator (laci2 family) from escherichia coli complexed with phosphate
6c3brqA_



100.0 94 PDB header:transcription regulator
Chain: A: PDB Molecule:hth-type transcriptional regulator ascg;
PDBTitle: crystal structure of the escherichia coli transcriptional repressor2 ascg
7c2iksA_



100.0 19 PDB header:transcription
Chain: A: PDB Molecule:dna-binding transcriptional dual regulator;
PDBTitle: crystal structure of n-terminal truncated dna-binding transcriptional2 dual regulator from escherichia coli k12
8c3qk7C_



100.0 18 PDB header:transcription regulator
Chain: C: PDB Molecule:transcriptional regulators;
PDBTitle: crystal structure of putative transcriptional regulator from yersinia2 pestis biovar microtus str. 91001
9c3k4hA_



100.0 23 PDB header:transcription regulator
Chain: A: PDB Molecule:putative transcriptional regulator;
PDBTitle: crystal structure of putative transcriptional regulator laci from2 bacillus cereus subsp. cytotoxis nvh 391-98
10d2nzug1



100.0 26 Fold:Periplasmic binding protein-like I
Superfamily:Periplasmic binding protein-like I
Family:L-arabinose binding protein-like
11c3kkeA_



100.0 22 PDB header:transcription regulator
Chain: A: PDB Molecule:laci family transcriptional regulator;
PDBTitle: crystal structure of a laci family transcriptional regulator2 from mycobacterium smegmatis
12c3c3kA_



100.0 23 PDB header:isomerase
Chain: A: PDB Molecule:alanine racemase;
PDBTitle: crystal structure of an uncharacterized protein from actinobacillus2 succinogenes
13c3d8uA_



100.0 22 PDB header:transcription regulator
Chain: A: PDB Molecule:purr transcriptional regulator;
PDBTitle: the crystal structure of a purr family transcriptional regulator from2 vibrio parahaemolyticus rimd 2210633
14c3k9cA_



100.0 25 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, laci family protein;
PDBTitle: crystal structure of laci transcriptional regulator from rhodococcus2 species.
15c3hcwB_



100.0 14 PDB header:rna binding protein
Chain: B: PDB Molecule:maltose operon transcriptional repressor;
PDBTitle: crystal structure of probable maltose operon transcriptional repressor2 malr from staphylococcus areus
16d1tlfa_



100.0 25 Fold:Periplasmic binding protein-like I
Superfamily:Periplasmic binding protein-like I
Family:L-arabinose binding protein-like
17c3h5oB_



100.0 24 PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulator gntr;
PDBTitle: the crystal structure of transcription regulator gntr from2 chromobacterium violaceum
18c2rgyA_



100.0 30 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, laci family;
PDBTitle: crystal structure of transcriptional regulator of laci family from2 burkhoderia phymatum
19c1jyeA_



100.0 25 PDB header:transcription
Chain: A: PDB Molecule:lactose operon repressor;
PDBTitle: structure of a dimeric lac repressor with c-terminal deletion and k84l2 substitution
20d1jyea_



100.0 25 Fold:Periplasmic binding protein-like I
Superfamily:Periplasmic binding protein-like I
Family:L-arabinose binding protein-like
21c3bblA_



not modelled 100.0 24 PDB header:regulatory protein
Chain: A: PDB Molecule:regulatory protein of laci family;
PDBTitle: crystal structure of a regulatory protein of laci family from2 chloroflexus aggregans
22c2o20H_



not modelled 100.0 24 PDB header:transcription
Chain: H: PDB Molecule:catabolite control protein a;
PDBTitle: crystal structure of transcription regulator ccpa of lactococcus2 lactis
23c3mizB_



not modelled 100.0 20 PDB header:transcription regulator
Chain: B: PDB Molecule:putative transcriptional regulator protein, laci
PDBTitle: crystal structure of a putative transcriptional regulator2 protein, lacl family from rhizobium etli
24c3e3mA_



not modelled 100.0 25 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator, laci family;
PDBTitle: crystal structure of a laci family transcriptional2 regulator from silicibacter pomeroyi
25c3gv0A_



not modelled 100.0 13 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, laci family;
PDBTitle: crystal structure of laci family transcription regulator from2 agrobacterium tumefaciens
26c3egcF_



not modelled 100.0 26 PDB header:structural genomics, unknown function
Chain: F: PDB Molecule:putative ribose operon repressor;
PDBTitle: crystal structure of a putative ribose operon repressor from2 burkholderia thailandensis
27c3cs3A_



not modelled 100.0 21 PDB header:transcription regulator
Chain: A: PDB Molecule:sugar-binding transcriptional regulator, laci family;
PDBTitle: crystal structure of sugar-binding transcriptional regulator (laci2 family) from enterococcus faecalis
28d1dbqa_



not modelled 100.0 25 Fold:Periplasmic binding protein-like I
Superfamily:Periplasmic binding protein-like I
Family:L-arabinose binding protein-like
29c2qu7B_



not modelled 100.0 24 PDB header:transcription
Chain: B: PDB Molecule:putative transcriptional regulator;
PDBTitle: crystal structure of a putative transcription regulator2 from staphylococcus saprophyticus subsp. saprophyticus
30c3ctpB_



not modelled 100.0 22 PDB header:transcription regulator
Chain: B: PDB Molecule:periplasmic binding protein/laci transcriptional regulator;
PDBTitle: crystal structure of periplasmic binding protein/laci transcriptional2 regulator from alkaliphilus metalliredigens qymf complexed with d-3 xylulofuranose
31c2h0aA_



not modelled 100.0 21 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator;
PDBTitle: crystal structure of probable transcription regulator from2 thermus thermophilus
32c3g85A_



not modelled 100.0 18 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator (laci family);
PDBTitle: crystal structure of laci family transcription regulator from2 clostridium acetobutylicum
33d1jx6a_



not modelled 100.0 12 Fold:Periplasmic binding protein-like I
Superfamily:Periplasmic binding protein-like I
Family:L-arabinose binding protein-like
34c3o74A_



not modelled 100.0 19 PDB header:transcription
Chain: A: PDB Molecule:fructose transport system repressor frur;
PDBTitle: crystal structure of cra transcriptional dual regulator from2 pseudomonas putida
35c3clkB_



not modelled 100.0 20 PDB header:transcription regulator
Chain: B: PDB Molecule:transcription regulator;
PDBTitle: crystal structure of a transcription regulator from lactobacillus2 plantarum
36c3huuC_



not modelled 100.0 17 PDB header:transcription regulator
Chain: C: PDB Molecule:transcription regulator like protein;
PDBTitle: crystal structure of transcription regulator like protein from2 staphylococcus haemolyticus
37c2ioyB_



not modelled 100.0 19 PDB header:sugar binding protein
Chain: B: PDB Molecule:periplasmic sugar-binding protein;
PDBTitle: crystal structure of thermoanaerobacter tengcongensis2 ribose binding protein
38c3hs3A_



not modelled 100.0 15 PDB header:transcription regulator
Chain: A: PDB Molecule:ribose operon repressor;
PDBTitle: crystal structure of periplasmic binding ribose operon2 repressor protein from lactobacillus acidophilus
39c3bilA_



not modelled 100.0 24 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:probable laci-family transcriptional regulator;
PDBTitle: crystal structure of a probable laci family transcriptional2 regulator from corynebacterium glutamicum
40c3jy6B_



not modelled 100.0 14 PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulator, laci family;
PDBTitle: crystal structure of laci transcriptional regulator from lactobacillus2 brevis
41c3jvdA_



not modelled 100.0 24 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulators;
PDBTitle: crystal structure of putative transcription regulation repressor (laci2 family) from corynebacterium glutamicum
42d2dria_



not modelled 100.0 20 Fold:Periplasmic binding protein-like I
Superfamily:Periplasmic binding protein-like I
Family:L-arabinose binding protein-like
43c3gybB_



not modelled 100.0 24 PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulators (laci-family
PDBTitle: crystal structure of a laci-family transcriptional2 regulatory protein from corynebacterium glutamicum
44c3l6uA_



not modelled 100.0 17 PDB header:transport protein
Chain: A: PDB Molecule:abc-type sugar transport system periplasmic
PDBTitle: crystal structure of abc-type sugar transport system,2 periplasmic component from exiguobacterium sibiricum
45c2fn9A_



not modelled 100.0 17 PDB header:sugar binding protein
Chain: A: PDB Molecule:ribose abc transporter, periplasmic ribose-binding protein;
PDBTitle: thermotoga maritima ribose binding protein unliganded form
46d1guda_



not modelled 100.0 16 Fold:Periplasmic binding protein-like I
Superfamily:Periplasmic binding protein-like I
Family:L-arabinose binding protein-like
47d1byka_



not modelled 100.0 18 Fold:Periplasmic binding protein-like I
Superfamily:Periplasmic binding protein-like I
Family:L-arabinose binding protein-like
48c3brsA_



not modelled 100.0 16 PDB header:transport protein
Chain: A: PDB Molecule:periplasmic binding protein/laci transcriptional regulator;
PDBTitle: crystal structure of sugar transporter from clostridium2 phytofermentans
49c3l49D_



not modelled 100.0 16 PDB header:transport protein
Chain: D: PDB Molecule:abc sugar (ribose) transporter, periplasmic
PDBTitle: crystal structure of abc sugar transporter subunit from2 rhodobacter sphaeroides 2.4.1
50d8abpa_



not modelled 100.0 15 Fold:Periplasmic binding protein-like I
Superfamily:Periplasmic binding protein-like I
Family:L-arabinose binding protein-like
51c3ksmA_



not modelled 100.0 19 PDB header:transport protein
Chain: A: PDB Molecule:abc-type sugar transport system, periplasmic component;
PDBTitle: crystal structure of abc-type sugar transport system, periplasmic2 component from hahella chejuensis
52c3ma0A_



not modelled 100.0 16 PDB header:sugar binding protein
Chain: A: PDB Molecule:d-xylose-binding periplasmic protein;
PDBTitle: closed liganded crystal structure of xylose binding protein from2 escherichia coli
53c3g1wB_



not modelled 100.0 12 PDB header:transport protein
Chain: B: PDB Molecule:sugar abc transporter;
PDBTitle: crystal structure of sugar abc transporter (sugar-binding protein)2 from bacillus halodurans
54c2rjoA_



not modelled 100.0 16 PDB header:signaling protein
Chain: A: PDB Molecule:twin-arginine translocation pathway signal protein;
PDBTitle: crystal structure of twin-arginine translocation pathway signal2 protein from burkholderia phytofirmans
55c3e61A_



not modelled 100.0 15 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative transcriptional repressor of ribose operon;
PDBTitle: crystal structure of a putative transcriptional repressor of ribose2 operon from staphylococcus saprophyticus subsp. saprophyticus
56c2vk2A_



not modelled 100.0 19 PDB header:transport protein
Chain: A: PDB Molecule:abc transporter periplasmic-binding protein ytfq;
PDBTitle: crystal structure of a galactofuranose binding protein
57c3h75A_



not modelled 100.0 17 PDB header:sugar binding protein
Chain: A: PDB Molecule:periplasmic sugar-binding domain protein;
PDBTitle: crystal structure of a periplasmic sugar-binding protein from the2 pseudomonas fluorescens
58d1gcaa_



not modelled 100.0 18 Fold:Periplasmic binding protein-like I
Superfamily:Periplasmic binding protein-like I
Family:L-arabinose binding protein-like
59d2fvya1



not modelled 100.0 19 Fold:Periplasmic binding protein-like I
Superfamily:Periplasmic binding protein-like I
Family:L-arabinose binding protein-like
60c3gbvB_



not modelled 100.0 11 PDB header:transcription regulator
Chain: B: PDB Molecule:putative laci-family transcriptional regulator;
PDBTitle: crystal structure of a putative laci transcriptional regulator from2 bacteroides fragilis
61c2qvcC_



not modelled 100.0 15 PDB header:transport protein
Chain: C: PDB Molecule:sugar abc transporter, periplasmic sugar-binding
PDBTitle: crystal structure of a periplasmic sugar abc transporter2 from thermotoga maritima
62c2x7xA_



not modelled 99.9 15 PDB header:transferase
Chain: A: PDB Molecule:sensor protein;
PDBTitle: fructose binding periplasmic domain of hybrid two component2 system bt1754
63d1tjya_



not modelled 99.9 12 Fold:Periplasmic binding protein-like I
Superfamily:Periplasmic binding protein-like I
Family:L-arabinose binding protein-like
64c3rotA_



not modelled 99.9 13 PDB header:transport protein
Chain: A: PDB Molecule:abc sugar transporter, periplasmic sugar binding protein;
PDBTitle: crystal structure of abc sugar transporter (periplasmic sugar binding2 protein) from legionella pneumophila
65c3o1hB_



not modelled 99.9 10 PDB header:signaling protein
Chain: B: PDB Molecule:periplasmic protein tort;
PDBTitle: crystal structure of the tors sensor domain - tort complex in the2 presence of tmao
66c3d02A_



not modelled 99.9 15 PDB header:sugar binding protein
Chain: A: PDB Molecule:putative laci-type transcriptional regulator;
PDBTitle: crystal structure of periplasmic sugar-binding protein2 (yp_001338366.1) from klebsiella pneumoniae subsp. pneumoniae mgh3 78578 at 1.30 a resolution
67c2fqxA_



not modelled 99.8 15 PDB header:transport protein
Chain: A: PDB Molecule:membrane lipoprotein tmpc;
PDBTitle: pnra from treponema pallidum complexed with guanosine
68c2hqbA_



not modelled 99.8 11 PDB header:transcription
Chain: A: PDB Molecule:transcriptional activator of comk gene;
PDBTitle: crystal structure of a transcriptional activator of comk2 gene from bacillus halodurans
69c3lftA_



not modelled 99.8 12 PDB header:structure genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: the crystal structure of the abc domain in complex with l-trp from2 streptococcus pneumonia to 1.35a
70c2qh8A_



not modelled 99.7 11 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of conserved domain protein from vibrio2 cholerae o1 biovar eltor str. n16961
71d2bjca1



not modelled 99.7 43 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:GalR/LacI-like bacterial regulator
72d2hsga1



not modelled 99.7 48 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:GalR/LacI-like bacterial regulator
73d1efaa1



not modelled 99.7 42 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:GalR/LacI-like bacterial regulator
74d1qpza1



not modelled 99.7 40 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:GalR/LacI-like bacterial regulator
75d1uxda_



not modelled 99.6 39 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:GalR/LacI-like bacterial regulator
76d1lcda_



not modelled 99.6 44 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:GalR/LacI-like bacterial regulator
77c3s99A_



not modelled 99.5 11 PDB header:lipid binding protein
Chain: A: PDB Molecule:basic membrane lipoprotein;
PDBTitle: crystal structure of a basic membrane lipoprotein from brucella2 melitensis, iodide soak
78c2lcvA_



not modelled 99.5 52 PDB header:transcription regulator
Chain: A: PDB Molecule:hth-type transcriptional repressor cytr;
PDBTitle: structure of the cytidine repressor dna-binding domain; an alternate2 calculation
79d1uxca_



not modelled 99.5 40 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:GalR/LacI-like bacterial regulator
80c2l8nA_



not modelled 99.5 52 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional repressor cytr;
PDBTitle: nmr structure of the cytidine repressor dna binding domain in presence2 of operator half-site dna
81d1qo0a_



not modelled 98.2 13 Fold:Periplasmic binding protein-like I
Superfamily:Periplasmic binding protein-like I
Family:L-arabinose binding protein-like
82c3qi7A_



not modelled 98.1 10 PDB header:transcription
Chain: A: PDB Molecule:putative transcriptional regulator;
PDBTitle: crystal structure of a putative transcriptional regulator2 (yp_001089212.1) from clostridium difficile 630 at 1.86 a resolution
83c3sg0A_



not modelled 98.0 15 PDB header:signaling protein
Chain: A: PDB Molecule:extracellular ligand-binding receptor;
PDBTitle: the crystal structure of an extracellular ligand-binding receptor from2 rhodopseudomonas palustris haa2
84c3t0nA_



not modelled 97.9 16 PDB header:signaling protein
Chain: A: PDB Molecule:twin-arginine translocation pathway signal;
PDBTitle: crystal structure of twin-arginine translocation pathway signal from2 rhodopseudomonas palustris bisb5
85c3eafA_



not modelled 97.9 12 PDB header:transport protein
Chain: A: PDB Molecule:abc transporter, substrate binding protein;
PDBTitle: crystal structure of abc transporter, substrate binding protein2 aeropyrum pernix
86c3hutA_



not modelled 97.8 15 PDB header:transport protein
Chain: A: PDB Molecule:putative branched-chain amino acid abc
PDBTitle: crystal structure of a putative branched-chain amino acid2 abc transporter from rhodospirillum rubrum
87d1usga_



not modelled 97.8 9 Fold:Periplasmic binding protein-like I
Superfamily:Periplasmic binding protein-like I
Family:L-arabinose binding protein-like
88c3snrA_



not modelled 97.8 13 PDB header:transport protein
Chain: A: PDB Molecule:extracellular ligand-binding receptor;
PDBTitle: rpd_1889 protein, an extracellular ligand-binding receptor from2 rhodopseudomonas palustris.
89d3ckma1



not modelled 97.7 10 Fold:Periplasmic binding protein-like I
Superfamily:Periplasmic binding protein-like I
Family:L-arabinose binding protein-like
90d2liva_



not modelled 97.7 7 Fold:Periplasmic binding protein-like I
Superfamily:Periplasmic binding protein-like I
Family:L-arabinose binding protein-like
91c3n0wA_



not modelled 97.7 14 PDB header:transport protein
Chain: A: PDB Molecule:abc branched chain amino acid family transporter,
PDBTitle: crystal structure of a branched chain amino acid abc transporter2 periplasmic ligand-binding protein (bxe_c0949) from burkholderia3 xenovorans lb400 at 1.88 a resolution
92c3i09A_



not modelled 97.7 13 PDB header:transport protein
Chain: A: PDB Molecule:periplasmic branched-chain amino acid-binding protein;
PDBTitle: crystal structure of a periplasmic binding protein (bma2936) from2 burkholderia mallei at 1.80 a resolution
93c3i45A_



not modelled 97.6 10 PDB header:signaling protein
Chain: A: PDB Molecule:twin-arginine translocation pathway signal protein;
PDBTitle: crystal structure of putative twin-arginine translocation pathway2 signal protein from rhodospirillum rubrum atcc 11170
94c3ip5A_



not modelled 97.6 8 PDB header:transport protein
Chain: A: PDB Molecule:abc transporter, substrate binding protein (amino acid);
PDBTitle: structure of atu2422-gaba receptor in complex with alanine
95c3lopA_



not modelled 97.4 11 PDB header:substrate binding protein
Chain: A: PDB Molecule:substrate binding periplasmic protein;
PDBTitle: crystal structure of substrate-binding periplasmic protein2 (pbp) from ralstonia solanacearum
96c3lkbB_



not modelled 97.1 8 PDB header:transport protein
Chain: B: PDB Molecule:probable branched-chain amino acid abc
PDBTitle: crystal structure of a branched chain amino acid abc2 transporter from thermus thermophilus with bound valine
97c3td9A_



not modelled 97.0 11 PDB header:transport protein
Chain: A: PDB Molecule:branched chain amino acid abc transporter, periplasmic
PDBTitle: crystal structure of a leucine binding protein livk (tm1135) from2 thermotoga maritima msb8 at 1.90 a resolution
98c3h5lB_



not modelled 96.8 13 PDB header:transport protein
Chain: B: PDB Molecule:putative branched-chain amino acid abc
PDBTitle: crystal structure of a putative branched-chain amino acid2 abc transporter from silicibacter pomeroyi
99c3trbA_



not modelled 96.4 19 PDB header:dna binding protein
Chain: A: PDB Molecule:virulence-associated protein i;
PDBTitle: structure of an addiction module antidote protein of a higa (higa)2 family from coxiella burnetii
100c2ebyA_



not modelled 96.3 22 PDB header:transcription
Chain: A: PDB Molecule:putative hth-type transcriptional regulator ybaq;
PDBTitle: crystal structure of a hypothetical protein from e. coli
101c3cecA_



not modelled 96.3 24 PDB header:transcription
Chain: A: PDB Molecule:putative antidote protein of plasmid maintenance system;
PDBTitle: crystal structure of a putative antidote protein of plasmid2 maintenance system (npun_f2943) from nostoc punctiforme pcc 73102 at3 1.60 a resolution
102d1jdpa_



not modelled 96.2 9 Fold:Periplasmic binding protein-like I
Superfamily:Periplasmic binding protein-like I
Family:L-arabinose binding protein-like
103c1jdpA_



not modelled 96.2 9 PDB header:signaling protein
Chain: A: PDB Molecule:atrial natriuretic peptide clearance receptor;
PDBTitle: crystal structure of hormone/receptor complex
104c2w48D_



not modelled 96.2 34 PDB header:transcription
Chain: D: PDB Molecule:sorbitol operon regulator;
PDBTitle: crystal structure of the full-length sorbitol operon2 regulator sorc from klebsiella pneumoniae
105c3n0xA_



not modelled 96.1 12 PDB header:transport protein
Chain: A: PDB Molecule:possible substrate binding protein of abc transporter
PDBTitle: crystal structure of an abc-type branched-chain amino acid transporter2 (rpa4397) from rhodopseudomonas palustris cga009 at 1.50 a resolution
106c3eusB_



not modelled 96.1 16 PDB header:dna binding protein
Chain: B: PDB Molecule:dna-binding protein;
PDBTitle: the crystal structure of the dna binding protein from silicibacter2 pomeroyi
107c3eetA_



not modelled 96.0 13 PDB header:transcription regulator
Chain: A: PDB Molecule:putative gntr-family transcriptional regulator;
PDBTitle: crystal structure of putative gntr-family transcriptional2 regulator
108c3f8mA_



not modelled 96.0 26 PDB header:transcription
Chain: A: PDB Molecule:gntr-family protein transcriptional regulator;
PDBTitle: crystal structure of phnf from mycobacterium smegmatis
109d1rioa_



not modelled 95.9 13 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
110c1y9qA_



not modelled 95.9 22 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, hth_3 family;
PDBTitle: crystal structure of hth_3 family transcriptional regulator2 from vibrio cholerae
111c3t76A_



not modelled 95.9 22 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator vanug;
PDBTitle: crystal structure of transcriptional regulator vanug, form ii
112c1u78A_



not modelled 95.8 20 PDB header:dna binding protein/dna
Chain: A: PDB Molecule:transposable element tc3 transposase;
PDBTitle: structure of the bipartite dna-binding domain of tc32 transposase bound to transposon dna
113c2bnoA_



not modelled 95.8 19 PDB header:oxidoreductase
Chain: A: PDB Molecule:epoxidase;
PDBTitle: the structure of hydroxypropylphosphonic acid epoxidase2 from s. wedmorenis.
114d2icta1



not modelled 95.8 22 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:SinR domain-like
115c3bs3A_



not modelled 95.7 27 PDB header:dna binding protein
Chain: A: PDB Molecule:putative dna-binding protein;
PDBTitle: crystal structure of a putative dna-binding protein from bacteroides2 fragilis
116d2b5aa1



not modelled 95.7 24 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:SinR domain-like
117c2di3A_



not modelled 95.7 26 PDB header:transcription
Chain: A: PDB Molecule:bacterial regulatory proteins, gntr family;
PDBTitle: crystal structure of the transcriptional factor cgl29152 from corynebacterium glutamicum
118d1adra_



not modelled 95.7 19 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
119d2o38a1



not modelled 95.7 22 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:NE1354
120c2o38A_



not modelled 95.7 22 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein;
PDBTitle: putative xre family transcriptional regulator

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0