Email l.a.kelley@imperial.ac.uk Description P0AB83 Date Thu Jan 5 11:14:51 GMT 2012 Unique Job ID 118b47b9a647239f

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d2abka_ 100.0 100 Fold:DNA-glycosylase Superfamily:DNA-glycosylase Family:Endonuclease III 2 d1orna_ 100.0 46 Fold:DNA-glycosylase Superfamily:DNA-glycosylase Family:Endonuclease III 3 c1rrqA_ 100.0 22 PDB header:hydrolase/dna Chain: A: PDB Molecule:muty; PDBTitle: muty adenine glycosylase in complex with dna containing an2 a:oxog pair 4 d1keaa_ 100.0 28 Fold:DNA-glycosylase Superfamily:DNA-glycosylase Family:Mismatch glycosylase 5 d1kg2a_ 100.0 20 Fold:DNA-glycosylase Superfamily:DNA-glycosylase Family:Mismatch glycosylase 6 c3n5nX_ 100.0 21 PDB header:hydrolase Chain: X: PDB Molecule:a/g-specific adenine dna glycosylase; PDBTitle: crystal structure analysis of the catalytic domain and interdomain2 connector of human muty homologue 7 d1rrqa1 100.0 22 Fold:DNA-glycosylase Superfamily:DNA-glycosylase Family:Mismatch glycosylase 8 d1pu6a_ 100.0 16 Fold:DNA-glycosylase Superfamily:DNA-glycosylase Family:3-Methyladenine DNA glycosylase III (MagIII) 9 c3f10A_ 100.0 15 PDB header:hydrolase, lyase Chain: A: PDB Molecule:8-oxoguanine-dna-glycosylase; PDBTitle: crystal structure of clostridium acetobutylicum 8-2 oxoguanine dna glycosylase in complex with 8-oxoguanosine 10 c3n0uB_ 100.0 16 PDB header:hydrolase, lyase Chain: B: PDB Molecule:probable n-glycosylase/dna lyase; PDBTitle: crystal structure of tm1821, the 8-oxoguanine dna glycosylase of2 thermotoga maritima 11 c3kntC_ 100.0 18 PDB header:hydrolase, lyase/dna Chain: C: PDB Molecule:n-glycosylase/dna lyase; PDBTitle: crystal structure of methanocaldococcus jannaschii 8-2 oxoguanine glycosylase/lyase in complex with 15mer dna3 containing 8-oxoguanine 12 c3s6iA_ 100.0 17 PDB header:hydrolase/dna Chain: A: PDB Molecule:dna-3-methyladenine glycosylase 1; PDBTitle: schizosaccaromyces pombe 3-methyladenine dna glycosylase (mag1) in2 complex with abasic-dna. 13 c2yg8B_ 100.0 18 PDB header:hydrolase Chain: B: PDB Molecule:dna-3-methyladenine glycosidase ii, putative; PDBTitle: structure of an unusual 3-methyladenine dna glycosylase ii (2 alka) from deinococcus radiodurans 14 c1ko9A_ 100.0 20 PDB header:hydrolase Chain: A: PDB Molecule:8-oxoguanine dna glycosylase; PDBTitle: native structure of the human 8-oxoguanine dna glycosylase2 hogg1 15 c1yqmA_ 100.0 19 PDB header:hydrolase/dna Chain: A: PDB Molecule:n-glycosylase/dna lyase; PDBTitle: catalytically inactive human 8-oxoguanine glycosylase2 crosslinked to 7-deazaguanine containing dna 16 d1mpga1 100.0 21 Fold:DNA-glycosylase Superfamily:DNA-glycosylase Family:DNA repair glycosylase, 2 C-terminal domains 17 c3fhgA_ 100.0 20 PDB header:dna repair, hydrolase, lyase Chain: A: PDB Molecule:n-glycosylase/dna lyase; PDBTitle: crystal structure of sulfolobus solfataricus 8-oxoguanine dna2 glycosylase (ssogg) 18 d1ngna_ 100.0 18 Fold:DNA-glycosylase Superfamily:DNA-glycosylase Family:Mismatch glycosylase 19 d2noha1 100.0 20 Fold:DNA-glycosylase Superfamily:DNA-glycosylase Family:DNA repair glycosylase, 2 C-terminal domains 20 c2jhnB_ 100.0 26 PDB header:hydrolase Chain: B: PDB Molecule:3-methyladenine dna-glycosylase; PDBTitle: 3-methyladenine dna-glycosylase from archaeoglobus fulgidus 21 c1mpgB_ not modelled 99.9 22 PDB header:hydrolase Chain: B: PDB Molecule:3-methyladenine dna glycosylase ii; PDBTitle: 3-methyladenine dna glycosylase ii from escherichia coli 22 c2h56C_ not modelled 99.9 14 PDB header:hydrolase Chain: C: PDB Molecule:dna-3-methyladenine glycosidase; PDBTitle: crystal structure of dna-3-methyladenine glycosidase (10174367) from2 bacillus halodurans at 2.55 a resolution 23 c2jg6A_ not modelled 96.1 15 PDB header:hydrolase Chain: A: PDB Molecule:dna-3-methyladenine glycosidase; PDBTitle: crystal structure of a 3-methyladenine dna glycosylase i2 from staphylococcus aureus 24 d1nkua_ not modelled 95.9 22 Fold:DNA-glycosylase Superfamily:DNA-glycosylase Family:3-Methyladenine DNA glycosylase I (Tag) 25 c2h5xA_ not modelled 95.9 20 PDB header:dna binding protein Chain: A: PDB Molecule:holliday junction atp-dependent dna helicase ruva; PDBTitle: ruva from mycobacterium tuberculosis 26 d1dgsa1 not modelled 95.1 22 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:NAD+-dependent DNA ligase, domain 3 27 d2fmpa1 not modelled 94.6 20 Fold:SAM domain-like Superfamily:DNA polymerase beta, N-terminal domain-like Family:DNA polymerase beta, N-terminal domain-like 28 c2owoA_ not modelled 93.9 23 PDB header:ligase/dna Chain: A: PDB Molecule:dna ligase; PDBTitle: last stop on the road to repair: structure of e.coli dna ligase bound2 to nicked dna-adenylate 29 d2bcqa1 not modelled 93.7 21 Fold:SAM domain-like Superfamily:DNA polymerase beta, N-terminal domain-like Family:DNA polymerase beta, N-terminal domain-like 30 c1vddC_ not modelled 93.3 19 PDB header:recombination Chain: C: PDB Molecule:recombination protein recr; PDBTitle: crystal structure of recombinational repair protein recr 31 d1vdda_ not modelled 92.8 21 Fold:Recombination protein RecR Superfamily:Recombination protein RecR Family:Recombination protein RecR 32 d1nzpa_ not modelled 92.8 19 Fold:SAM domain-like Superfamily:DNA polymerase beta, N-terminal domain-like Family:DNA polymerase beta, N-terminal domain-like 33 c1dgsB_ not modelled 92.7 22 PDB header:ligase Chain: B: PDB Molecule:dna ligase; PDBTitle: crystal structure of nad+-dependent dna ligase from t.2 filiformis 34 d1ixra1 not modelled 92.6 27 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:DNA helicase RuvA subunit, middle domain 35 d1cuka2 not modelled 92.5 35 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:DNA helicase RuvA subunit, middle domain 36 c1ixrA_ not modelled 92.4 27 PDB header:hydrolase Chain: A: PDB Molecule:holliday junction dna helicase ruva; PDBTitle: ruva-ruvb complex 37 d1jmsa1 not modelled 92.4 11 Fold:SAM domain-like Superfamily:DNA polymerase beta, N-terminal domain-like Family:DNA polymerase beta, N-terminal domain-like 38 c8iczA_ not modelled 92.3 20 PDB header:transferase/dna Chain: A: PDB Molecule:protein (dna polymerase beta (e.c.2.7.7.7)); PDBTitle: dna polymerase beta (pol b) (e.c.2.7.7.7) complexed with2 seven base pairs of dna; soaked in the presence of of datp3 (1 millimolar), mncl2 (5 millimolar), and lithium sulfate4 (75 millimolar) 39 d1bvsa2 not modelled 92.1 18 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:DNA helicase RuvA subunit, middle domain 40 d1dk2a_ not modelled 92.0 20 Fold:SAM domain-like Superfamily:DNA polymerase beta, N-terminal domain-like Family:DNA polymerase beta, N-terminal domain-like 41 c2bcuA_ not modelled 91.6 21 PDB header:transferase, lyase/dna Chain: A: PDB Molecule:dna polymerase lambda; PDBTitle: dna polymerase lambda in complex with a dna duplex2 containing an unpaired damp and a t:t mismatch 42 c1d8lA_ not modelled 91.4 45 PDB header:gene regulation Chain: A: PDB Molecule:protein (holliday junction dna helicase ruva); PDBTitle: e. coli holliday junction binding protein ruva nh2 region2 lacking domain iii 43 d2bgwa1 not modelled 90.7 22 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Hef domain-like 44 c1v9pB_ not modelled 90.5 22 PDB header:ligase Chain: B: PDB Molecule:dna ligase; PDBTitle: crystal structure of nad+-dependent dna ligase 45 c1kdhA_ not modelled 90.4 22 PDB header:transferase/dna Chain: A: PDB Molecule:terminal deoxynucleotidyltransferase short PDBTitle: binary complex of murine terminal deoxynucleotidyl2 transferase with a primer single stranded dna 46 d2i1qa1 not modelled 89.7 19 Fold:SAM domain-like Superfamily:Rad51 N-terminal domain-like Family:DNA repair protein Rad51, N-terminal domain 47 c2ihmA_ not modelled 89.3 17 PDB header:transferase/dna Chain: A: PDB Molecule:dna polymerase mu; PDBTitle: polymerase mu in ternary complex with gapped 11mer dna2 duplex and bound incoming nucleotide 48 c2csdB_ not modelled 88.9 29 PDB header:isomerase Chain: B: PDB Molecule:topoisomerase v; PDBTitle: crystal structure of topoisomerase v (61 kda fragment) 49 d1szpa1 not modelled 88.6 20 Fold:SAM domain-like Superfamily:Rad51 N-terminal domain-like Family:DNA repair protein Rad51, N-terminal domain 50 c1kftA_ not modelled 87.9 16 PDB header:dna binding protein Chain: A: PDB Molecule:excinuclease abc subunit c; PDBTitle: solution structure of the c-terminal domain of uvrc from e-2 coli 51 d1kfta_ not modelled 87.9 16 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Excinuclease UvrC C-terminal domain 52 c1hjpA_ not modelled 87.8 17 PDB header:dna recombination Chain: A: PDB Molecule:ruva; PDBTitle: holliday junction binding protein ruva from e. coli 53 d1x2ia1 not modelled 87.7 18 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Hef domain-like 54 d1pzna1 not modelled 87.6 22 Fold:SAM domain-like Superfamily:Rad51 N-terminal domain-like Family:DNA repair protein Rad51, N-terminal domain 55 c2kp7A_ not modelled 87.6 7 PDB header:hydrolase Chain: A: PDB Molecule:crossover junction endonuclease mus81; PDBTitle: solution nmr structure of the mus81 n-terminal hhh.2 northeast structural genomics consortium target mmt1a 56 c2w9mB_ not modelled 87.5 22 PDB header:dna replication Chain: B: PDB Molecule:polymerase x; PDBTitle: structure of family x dna polymerase from deinococcus2 radiodurans 57 c1nomA_ not modelled 86.8 20 PDB header:nucleotidyltransferase Chain: A: PDB Molecule:dna polymerase beta; PDBTitle: dna polymerase beta (pol b) (e.c.2.7.7.7), 31-kd domain; soaked in the2 presence of mncl2 (5 millimolar) 58 d2a1jb1 not modelled 86.8 16 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Hef domain-like 59 d2edua1 not modelled 84.4 23 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:ComEA-like 60 d2duya1 not modelled 82.5 32 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:ComEA-like 61 d3bzka1 not modelled 82.2 14 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Tex HhH-containing domain-like 62 c3c1zA_ not modelled 81.6 18 PDB header:dna binding protein Chain: A: PDB Molecule:dna integrity scanning protein disa; PDBTitle: structure of the ligand-free form of a bacterial dna damage2 sensor protein 63 d1d8ba_ not modelled 80.2 22 Fold:SAM domain-like Superfamily:HRDC-like Family:HRDC domain from helicases 64 d2aq0a1 not modelled 78.3 13 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Hef domain-like 65 c1s5lu_ not modelled 78.1 24 PDB header:photosynthesis Chain: U: PDB Molecule:photosystem ii 12 kda extrinsic protein; PDBTitle: architecture of the photosynthetic oxygen evolving center 66 d1b22a_ not modelled 77.8 10 Fold:SAM domain-like Superfamily:Rad51 N-terminal domain-like Family:DNA repair protein Rad51, N-terminal domain 67 c1b22A_ not modelled 77.8 10 PDB header:dna binding protein Chain: A: PDB Molecule:dna repair protein rad51; PDBTitle: rad51 (n-terminal domain) 68 d2axtu1 not modelled 76.9 26 Fold:SAM domain-like Superfamily:PsbU/PolX domain-like Family:PsbU-like 69 d2vana1 not modelled 73.9 22 Fold:SAM domain-like Superfamily:PsbU/PolX domain-like Family:DNA polymerase beta-like, second domain 70 d1a77a1 not modelled 73.9 29 Fold:SAM domain-like Superfamily:5' to 3' exonuclease, C-terminal subdomain Family:5' to 3' exonuclease, C-terminal subdomain 71 d2fmpa2 not modelled 73.4 24 Fold:SAM domain-like Superfamily:PsbU/PolX domain-like Family:DNA polymerase beta-like, second domain 72 d1mc8a1 not modelled 73.3 40 Fold:SAM domain-like Superfamily:5' to 3' exonuclease, C-terminal subdomain Family:5' to 3' exonuclease, C-terminal subdomain 73 c3psiA_ not modelled 72.9 16 PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor spt6; PDBTitle: crystal structure of the spt6 core domain from saccharomyces2 cerevisiae, form spt6(239-1451) 74 d1szpb1 not modelled 72.0 20 Fold:SAM domain-like Superfamily:Rad51 N-terminal domain-like Family:DNA repair protein Rad51, N-terminal domain 75 d1jmsa3 not modelled 71.8 33 Fold:SAM domain-like Superfamily:PsbU/PolX domain-like Family:DNA polymerase beta-like, second domain 76 c3psfA_ not modelled 71.7 18 PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor spt6; PDBTitle: crystal structure of the spt6 core domain from saccharomyces2 cerevisiae, form spt6(236-1259) 77 d2bcqa2 not modelled 71.5 27 Fold:SAM domain-like Superfamily:PsbU/PolX domain-like Family:DNA polymerase beta-like, second domain 78 d1rxwa1 not modelled 69.7 36 Fold:SAM domain-like Superfamily:5' to 3' exonuclease, C-terminal subdomain Family:5' to 3' exonuclease, C-terminal subdomain 79 d1xo1a1 not modelled 67.2 23 Fold:SAM domain-like Superfamily:5' to 3' exonuclease, C-terminal subdomain Family:5' to 3' exonuclease, C-terminal subdomain 80 d1b43a1 not modelled 66.9 29 Fold:SAM domain-like Superfamily:5' to 3' exonuclease, C-terminal subdomain Family:5' to 3' exonuclease, C-terminal subdomain 81 d1lb2b_ not modelled 66.6 21 Fold:SAM domain-like Superfamily:C-terminal domain of RNA polymerase alpha subunit Family:C-terminal domain of RNA polymerase alpha subunit 82 d2csba3 not modelled 64.9 58 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Topoisomerase V repeat domain 83 d2i5ha1 not modelled 64.1 26 Fold:AF1531-like Superfamily:AF1531-like Family:AF1531-like 84 c2i5hA_ not modelled 64.1 26 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein af1531; PDBTitle: crystal structure of af1531 from archaeoglobus fulgidus,2 pfam duf655 85 d1ul1x1 not modelled 63.2 29 Fold:SAM domain-like Superfamily:5' to 3' exonuclease, C-terminal subdomain Family:5' to 3' exonuclease, C-terminal subdomain 86 d1cooa_ not modelled 62.7 21 Fold:SAM domain-like Superfamily:C-terminal domain of RNA polymerase alpha subunit Family:C-terminal domain of RNA polymerase alpha subunit 87 d1z3eb1 not modelled 62.6 21 Fold:SAM domain-like Superfamily:C-terminal domain of RNA polymerase alpha subunit Family:C-terminal domain of RNA polymerase alpha subunit 88 d1i94m_ not modelled 61.1 35 Fold:S13-like H2TH domain Superfamily:S13-like H2TH domain Family:Ribosomal protein S13 89 d1doqa_ not modelled 60.4 21 Fold:SAM domain-like Superfamily:C-terminal domain of RNA polymerase alpha subunit Family:C-terminal domain of RNA polymerase alpha subunit 90 c2nrzB_ not modelled 58.1 15 PDB header:hydrolase Chain: B: PDB Molecule:uvrabc system protein c; PDBTitle: crystal structure of the c-terminal half of uvrc bound to2 its catalytic divalent cation 91 c2oceA_ not modelled 57.8 27 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein pa5201; PDBTitle: crystal structure of tex family protein pa5201 from2 pseudomonas aeruginosa 92 c3iz6M_ not modelled 57.7 45 PDB header:ribosome Chain: M: PDB Molecule:40s ribosomal protein s18 (s13p); PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 93 c2xznM_ not modelled 56.4 35 PDB header:ribosome Chain: M: PDB Molecule:rps18e; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2 94 c2zkqm_ not modelled 55.5 53 PDB header:ribosomal protein/rna Chain: M: PDB Molecule: PDBTitle: structure of a mammalian ribosomal 40s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 95 d2gy9m1 not modelled 55.5 35 Fold:S13-like H2TH domain Superfamily:S13-like H2TH domain Family:Ribosomal protein S13 96 c1ut8B_ not modelled 55.2 20 PDB header:hydrolase Chain: B: PDB Molecule:exodeoxyribonuclease; PDBTitle: divalent metal ions (zinc) bound to t5 5'-exonuclease 97 c2ziuA_ not modelled 52.4 24 PDB header:hydrolase Chain: A: PDB Molecule:mus81 protein; PDBTitle: crystal structure of the mus81-eme1 complex 98 d2uubm1 not modelled 52.4 35 Fold:S13-like H2TH domain Superfamily:S13-like H2TH domain Family:Ribosomal protein S13 99 d1cmwa1 not modelled 51.4 56 Fold:SAM domain-like Superfamily:5' to 3' exonuclease, C-terminal subdomain Family:5' to 3' exonuclease, C-terminal subdomain 100 c2izoA_ not modelled 50.6 21 PDB header:hydrolase Chain: A: PDB Molecule:flap structure-specific endonuclease; PDBTitle: structure of an archaeal pcna1-pcna2-fen1 complex 101 d1wuda1 not modelled 50.4 19 Fold:SAM domain-like Superfamily:HRDC-like Family:HRDC domain from helicases 102 d2p6ra2 not modelled 49.9 24 Fold:Sec63 N-terminal domain-like Superfamily:Sec63 N-terminal domain-like Family:Achaeal helicase C-terminal domain 103 c1a77A_ not modelled 47.2 40 PDB header:5'-3' exo/endo nuclease Chain: A: PDB Molecule:flap endonuclease-1 protein; PDBTitle: flap endonuclease-1 from methanococcus jannaschii 104 d1gm5a2 not modelled 46.8 20 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:RecG "wedge" domain 105 c3q8lA_ not modelled 45.0 29 PDB header:hydrolase/dna Chain: A: PDB Molecule:flap endonuclease 1; PDBTitle: crystal structure of human flap endonuclease fen1 (wt) in complex with2 substrate 5'-flap dna, sm3+, and k+ 106 c1b43A_ not modelled 42.9 29 PDB header:transferase Chain: A: PDB Molecule:protein (fen-1); PDBTitle: fen-1 from p. furiosus 107 c1rxvA_ not modelled 42.1 36 PDB header:hydrolase/dna Chain: A: PDB Molecule:flap structure-specific endonuclease; PDBTitle: crystal structure of a. fulgidus fen-1 bound to dna 108 c3mr2A_ not modelled 40.2 8 PDB header:transferase/dna Chain: A: PDB Molecule:dna polymerase eta; PDBTitle: human dna polymerase eta in complex with normal dna and incoming2 nucleotide (nrm) 109 c1gm5A_ not modelled 39.9 14 PDB header:helicase Chain: A: PDB Molecule:recg; PDBTitle: structure of recg bound to three-way dna junction 110 c2bhnD_ not modelled 39.5 11 PDB header:hydrolase Chain: D: PDB Molecule:xpf endonuclease; PDBTitle: xpf from aeropyrum pernix 111 c1cmwA_ not modelled 38.5 45 PDB header:transferase Chain: A: PDB Molecule:protein (dna polymerase i); PDBTitle: crystal structure of taq dna-polymerase shows a new2 orientation for the structure-specific nuclease domain 112 c3oryA_ not modelled 37.0 29 PDB header:hydrolase Chain: A: PDB Molecule:flap endonuclease 1; PDBTitle: crystal structure of flap endonuclease 1 from hyperthermophilic2 archaeon desulfurococcus amylolyticus 113 c2rhfA_ not modelled 36.9 33 PDB header:hydrolase Chain: A: PDB Molecule:dna helicase recq; PDBTitle: d. radiodurans recq hrdc domain 3 114 d1jx4a2 not modelled 36.7 13 Fold:DNA/RNA polymerases Superfamily:DNA/RNA polymerases Family:Lesion bypass DNA polymerase (Y-family), catalytic domain 115 d1t57a_ not modelled 36.0 23 Fold:Pyruvate kinase C-terminal domain-like Superfamily:PK C-terminal domain-like Family:MTH1675-like 116 c1ul1Y_ not modelled 34.4 29 PDB header:hydrolase/dna binding protein Chain: Y: PDB Molecule:flap endonuclease-1; PDBTitle: crystal structure of the human fen1-pcna complex 117 c2rrdA_ not modelled 33.6 19 PDB header:dna binding protein Chain: A: PDB Molecule:hrdc domain from bloom syndrome protein; PDBTitle: structure of hrdc domain from human bloom syndrome protein, blm 118 c3qeaZ_ not modelled 32.2 40 PDB header:hydrolase/dna Chain: Z: PDB Molecule:exonuclease 1; PDBTitle: crystal structure of human exonuclease 1 exo1 (wt) in complex with dna2 (complex ii) 119 c1k1qA_ not modelled 31.6 13 PDB header:transcription Chain: A: PDB Molecule:dbh protein; PDBTitle: crystal structure of a dinb family error prone dna2 polymerase from sulfolobus solfataricus 120 d2e1fa1 not modelled 31.1 19 Fold:SAM domain-like Superfamily:HRDC-like Family:HRDC domain from helicases