Email l.a.kelley@imperial.ac.uk Description P77504 Date Thu Jan 5 12:30:05 GMT 2012 Unique Job ID 07352cab8308d1f3

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3ftjA_ 99.0 14 PDB header:hydrolase Chain: A: PDB Molecule:macrolide export atp-binding/permease protein PDBTitle: crystal structure of the periplasmic region of macb from2 actinobacillus actinomycetemcomitans 2 c3is6A_ 98.7 12 PDB header:transport protein Chain: A: PDB Molecule:putative permease protein, abc transporter; PDBTitle: the crystal structure of a domain of a putative permease protein from2 porphyromonas gingivalis to 2a 3 c2a8vA_ 81.8 27 PDB header:protein/rna Chain: A: PDB Molecule:rna binding domain of rho transcription PDBTitle: rho transcription termination factor/rna complex 4 c1ciiA_ 81.1 15 PDB header:transmembrane protein Chain: A: PDB Molecule:colicin ia; PDBTitle: colicin ia 5 d1a62a2 80.0 27 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 6 d1e32a1 73.6 16 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Cdc48 N-terminal domain-like 7 d1cz5a1 64.6 18 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Cdc48 N-terminal domain-like 8 d2d6fa1 64.1 15 Fold:Sm-like fold Superfamily:GatD N-terminal domain-like Family:GatD N-terminal domain-like 9 d2f9ha1 63.7 26 Fold:PTSIIA/GutA-like Superfamily:PTSIIA/GutA-like Family:PTSIIA/GutA-like 10 c1cz5A_ 59.9 17 PDB header:hydrolase Chain: A: PDB Molecule:vcp-like atpase; PDBTitle: nmr structure of vat-n: the n-terminal domain of vat (vcp-2 like atpase of thermoplasma) 11 d1udxa3 55.1 13 Fold:Obg GTP-binding protein C-terminal domain Superfamily:Obg GTP-binding protein C-terminal domain Family:Obg GTP-binding protein C-terminal domain 12 d1zq1a1 54.3 11 Fold:Sm-like fold Superfamily:GatD N-terminal domain-like Family:GatD N-terminal domain-like 13 d1ylea1 51.2 15 Fold:Acyl-CoA N-acyltransferases (Nat) Superfamily:Acyl-CoA N-acyltransferases (Nat) Family:AstA-like 14 c2pjhB_ 48.2 15 PDB header:transport protein Chain: B: PDB Molecule:transitional endoplasmic reticulum atpase; PDBTitle: strctural model of the p97 n domain- npl4 ubd complex 15 c3k07A_ 43.4 14 PDB header:transport protein Chain: A: PDB Molecule:cation efflux system protein cusa; PDBTitle: crystal structure of cusa 16 c1wlfA_ 39.9 17 PDB header:protein transport Chain: A: PDB Molecule:peroxisome biogenesis factor 1; PDBTitle: structure of the n-terminal domain of pex1 aaa-atpase:2 characterization of a putative adaptor-binding domain 17 d2jioa1 39.0 17 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain 18 c1oy8A_ 37.7 12 PDB header:membrane protein Chain: A: PDB Molecule:acriflavine resistance protein b; PDBTitle: structural basis of multiple drug binding capacity of the acrb2 multidrug efflux pump 19 c2fhdA_ 35.7 12 PDB header:cell cycle Chain: A: PDB Molecule:dna repair protein rhp9/crb2; PDBTitle: crystal structure of crb2 tandem tudor domains 20 c2yujA_ 32.5 24 PDB header:protein binding Chain: A: PDB Molecule:ubiquitin fusion degradation 1-like; PDBTitle: solution structure of human ubiquitin fusion degradation2 protein 1 homolog ufd1 21 c1zc1A_ not modelled 32.3 21 PDB header:protein turnover Chain: A: PDB Molecule:ubiquitin fusion degradation protein 1; PDBTitle: ufd1 exhibits the aaa-atpase fold with two distinct2 ubiquitin interaction sites 22 d1ub4c_ not modelled 32.0 32 Fold:Double-split beta-barrel Superfamily:AbrB/MazE/MraZ-like Family:Kis/PemI addiction antidote 23 d1ogya1 not modelled 30.5 17 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain 24 c3l0oB_ not modelled 29.1 30 PDB header:hydrolase Chain: B: PDB Molecule:transcription termination factor rho; PDBTitle: structure of rna-free rho transcription termination factor from2 thermotoga maritima 25 c1xpuB_ not modelled 28.9 27 PDB header:transcription/rna Chain: B: PDB Molecule:rho transcription termination factor; PDBTitle: structural mechanism of inhibition of the rho transcription2 termination factor by the antibiotic 5a-(3-formylphenylsulfanyl)-3 dihydrobicyclomycin (fpdb) 26 d1g8ka1 not modelled 28.7 27 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain 27 d1h0ha1 not modelled 28.2 24 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain 28 c2glwA_ not modelled 25.0 35 PDB header:transcription Chain: A: PDB Molecule:92aa long hypothetical protein; PDBTitle: the solution structure of phs018 from pyrococcus horikoshii 29 d1vlfm1 not modelled 24.4 12 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain 30 d2iv2x1 not modelled 23.8 12 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain 31 d1rqpa1 not modelled 23.7 27 Fold:Bacterial fluorinating enzyme, C-terminal domain Superfamily:Bacterial fluorinating enzyme, C-terminal domain Family:Bacterial fluorinating enzyme, C-terminal domain 32 d1kqfa1 not modelled 23.6 26 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain 33 d1mvfd_ not modelled 23.5 16 Fold:Double-split beta-barrel Superfamily:AbrB/MazE/MraZ-like Family:Kis/PemI addiction antidote 34 d1tmoa1 not modelled 22.8 21 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain 35 d1y5ia1 not modelled 21.4 22 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain 36 c1zq1B_ not modelled 21.2 13 PDB header:lyase Chain: B: PDB Molecule:glutamyl-trna(gln) amidotransferase subunit d; PDBTitle: structure of gatde trna-dependent amidotransferase from2 pyrococcus abyssi 37 c2cw5B_ not modelled 20.6 23 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:bacterial fluorinating enzyme homolog; PDBTitle: crystal structure of a conserved hypothetical protein from2 thermus thermophilus hb8 38 c3ltiA_ not modelled 20.4 13 PDB header:transferase Chain: A: PDB Molecule:dna-directed rna polymerase subunit beta; PDBTitle: crystal structure of the escherichia coli rna polymerase beta subunit2 beta2-betai4 domains 39 c2iv2X_ not modelled 19.2 13 PDB header:oxidoreductase Chain: X: PDB Molecule:formate dehydrogenase h; PDBTitle: reinterpretation of reduced form of formate dehydrogenase h2 from e. coli 40 c2p4vA_ not modelled 18.0 19 PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor greb; PDBTitle: crystal structure of the transcript cleavage factor, greb2 at 2.6a resolution 41 d1eu1a1 not modelled 17.8 10 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain 42 c2zbvC_ not modelled 17.0 23 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:uncharacterized conserved protein; PDBTitle: crystal structure of uncharacterized conserved protein from thermotoga2 maritima 43 c2q6oB_ not modelled 16.4 23 PDB header:biosynthetic protein Chain: B: PDB Molecule:hypothetical protein; PDBTitle: sall-y70t with sam and cl 44 c2w1tB_ not modelled 16.1 17 PDB header:transcription Chain: B: PDB Molecule:stage v sporulation protein t; PDBTitle: crystal structure of b. subtilis spovt 45 d1dmra1 not modelled 15.7 18 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain 46 c2f4nA_ not modelled 15.5 22 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein mj1651; PDBTitle: crystal structure of protein mj1651 from methanococcus2 jannaschii dsm 2661, pfam duf62 47 c3cfuA_ not modelled 14.9 14 PDB header:lipoprotein Chain: A: PDB Molecule:uncharacterized lipoprotein yjha; PDBTitle: crystal structure of the yjha protein from bacillus2 subtilis. northeast structural genomics consortium target3 sr562 48 c2d6fA_ not modelled 14.8 15 PDB header:ligase/rna Chain: A: PDB Molecule:glutamyl-trna(gln) amidotransferase subunit d; PDBTitle: crystal structure of glu-trna(gln) amidotransferase in the2 complex with trna(gln) 49 c1eu1A_ not modelled 14.3 13 PDB header:oxidoreductase Chain: A: PDB Molecule:dimethyl sulfoxide reductase; PDBTitle: the crystal structure of rhodobacter sphaeroides dimethylsulfoxide2 reductase reveals two distinct molybdenum coordination environments. 50 c1wu8B_ not modelled 14.1 27 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:hypothetical protein ph0463; PDBTitle: crystal structure of project ph0463 from pyrococcus horikoshii ot3 51 c2ki8A_ not modelled 14.0 16 PDB header:oxidoreductase Chain: A: PDB Molecule:tungsten formylmethanofuran dehydrogenase, PDBTitle: solution nmr structure of tungsten formylmethanofuran2 dehydrogenase subunit d from archaeoglobus fulgidus,3 northeast structural genomics consortium target att7 52 d1dzfa2 not modelled 14.0 28 Fold:RPB5-like RNA polymerase subunit Superfamily:RPB5-like RNA polymerase subunit Family:RPB5 53 c2v45A_ not modelled 14.0 17 PDB header:oxidoreductase Chain: A: PDB Molecule:periplasmic nitrate reductase; PDBTitle: a new catalytic mechanism of periplasmic nitrate reductase2 from desulfovibrio desulfuricans atcc 27774 from3 crystallographic and epr data and based on detailed4 analysis of the sixth ligand 54 d1guta_ not modelled 13.7 14 Fold:OB-fold Superfamily:MOP-like Family:Molybdate/tungstate binding protein MOP 55 d2vbua1 not modelled 13.7 32 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin kinase-like Family:CTP-dependent riboflavin kinase-like 56 d1hmja_ not modelled 13.2 17 Fold:RPB5-like RNA polymerase subunit Superfamily:RPB5-like RNA polymerase subunit Family:RPB5 57 c2nyaF_ not modelled 13.2 19 PDB header:oxidoreductase Chain: F: PDB Molecule:periplasmic nitrate reductase; PDBTitle: crystal structure of the periplasmic nitrate reductase2 (nap) from escherichia coli 58 d1h9ma1 not modelled 12.5 14 Fold:OB-fold Superfamily:MOP-like Family:BiMOP, duplicated molybdate-binding domain 59 d1fr3a_ not modelled 12.4 23 Fold:OB-fold Superfamily:MOP-like Family:Molybdate/tungstate binding protein MOP 60 c1rqrA_ not modelled 12.2 27 PDB header:transferase Chain: A: PDB Molecule:5'-fluoro-5'-deoxyadenosine synthase; PDBTitle: crystal structure and mechanism of a bacterial fluorinating enzyme,2 product complex 61 c3pjyB_ not modelled 12.0 21 PDB header:transcription regulator Chain: B: PDB Molecule:hypothetical signal peptide protein; PDBTitle: crystal structure of a putative transcription regulator (r01717) from2 sinorhizobium meliloti 1021 at 1.55 a resolution 62 c1g8jC_ not modelled 11.9 27 PDB header:oxidoreductase Chain: C: PDB Molecule:arsenite oxidase; PDBTitle: crystal structure analysis of arsenite oxidase from2 alcaligenes faecalis 63 c2cwbA_ not modelled 11.9 16 PDB header:protein binding Chain: A: PDB Molecule:chimera of immunoglobulin g binding protein g PDBTitle: solution structure of the ubiquitin-associated domain of2 human bmsc-ubp and its complex with ubiquitin 64 d1h9ma2 not modelled 11.8 23 Fold:OB-fold Superfamily:MOP-like Family:BiMOP, duplicated molybdate-binding domain 65 d2f23a2 not modelled 11.8 18 Fold:FKBP-like Superfamily:FKBP-like Family:GreA transcript cleavage factor, C-terminal domain 66 c1h0hA_ not modelled 11.7 24 PDB header:dehydrogenase Chain: A: PDB Molecule:formate dehydrogenase (large subunit); PDBTitle: tungsten containing formate dehydrogenase from2 desulfovibrio gigas 67 c2etnA_ not modelled 11.6 16 PDB header:transcription Chain: A: PDB Molecule:anti-cleavage anti-grea transcription factor PDBTitle: crystal structure of thermus aquaticus gfh1 68 c2kncA_ not modelled 11.5 20 PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha-iib; PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex 69 d1p9ka_ not modelled 11.5 11 Fold:Alpha-L RNA-binding motif Superfamily:Alpha-L RNA-binding motif Family:YbcJ-like 70 d1dgsa2 not modelled 11.4 15 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:DNA ligase/mRNA capping enzyme postcatalytic domain 71 c2l66B_ not modelled 11.4 20 PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulator, abrb family; PDBTitle: the dna-recognition fold of sso7c4 suggests a new member of spovt-abrb2 superfamily from archaea. 72 c3m7aA_ not modelled 11.3 33 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of saro_0823 (yp_496102.1) a protein of2 unknown function from novosphingobium aromaticivorans dsm3 12444 at 1.22 a resolution 73 c2ivfA_ not modelled 11.3 20 PDB header:oxidoreductase Chain: A: PDB Molecule:ethylbenzene dehydrogenase alpha-subunit; PDBTitle: ethylbenzene dehydrogenase from aromatoleum aromaticum 74 c2e7zA_ not modelled 11.2 8 PDB header:lyase Chain: A: PDB Molecule:acetylene hydratase ahy; PDBTitle: acetylene hydratase from pelobacter acetylenicus 75 d2d9ra1 not modelled 11.2 21 Fold:Double-split beta-barrel Superfamily:AF2212/PG0164-like Family:PG0164-like 76 c3h43F_ not modelled 11.1 10 PDB header:hydrolase Chain: F: PDB Molecule:proteasome-activating nucleotidase; PDBTitle: n-terminal domain of the proteasome-activating nucleotidase2 of methanocaldococcus jannaschii 77 c2dahA_ not modelled 11.1 12 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:ubiquilin-3; PDBTitle: solution structure of the c-terminal uba domain in the2 human ubiquilin 3 78 c1tmoA_ not modelled 10.9 21 PDB header:oxidoreductase Chain: A: PDB Molecule:trimethylamine n-oxide reductase; PDBTitle: trimethylamine n-oxide reductase from shewanella massilia 79 d2dnaa1 not modelled 10.8 8 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 80 d1k0ha_ not modelled 10.7 20 Fold:Phage tail proteins Superfamily:Phage tail proteins Family:gpFII-like 81 d2bwba1 not modelled 10.7 8 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 82 c2fugC_ not modelled 10.5 16 PDB header:oxidoreductase Chain: C: PDB Molecule:nadh-quinone oxidoreductase chain 3; PDBTitle: crystal structure of the hydrophilic domain of respiratory complex i2 from thermus thermophilus 83 c3l53F_ not modelled 10.4 28 PDB header:structural genomics, unknown function Chain: F: PDB Molecule:putative fumarylacetoacetate isomerase/hydrolase; PDBTitle: crystal structure of a putative fumarylacetoacetate2 isomerase/hydrolase from oleispira antarctica 84 c2zpmA_ not modelled 10.4 33 PDB header:hydrolase Chain: A: PDB Molecule:regulator of sigma e protease; PDBTitle: crystal structure analysis of pdz domain b 85 c2wg6L_ not modelled 10.4 17 PDB header:transcription,hydrolase Chain: L: PDB Molecule:general control protein gcn4, PDBTitle: proteasome-activating nucleotidase (pan) n-domain (57-134)2 from archaeoglobus fulgidus fused to gcn4, p61a mutant 86 c1wr1B_ not modelled 10.4 8 PDB header:signaling protein Chain: B: PDB Molecule:ubiquitin-like protein dsk2; PDBTitle: the complex sturcture of dsk2p uba with ubiquitin 87 c1h5nC_ not modelled 10.3 18 PDB header:oxidoreductase Chain: C: PDB Molecule:dmso reductase; PDBTitle: dmso reductase modified by the presence of dms and air 88 d4ubpc1 not modelled 10.2 21 Fold:Composite domain of metallo-dependent hydrolases Superfamily:Composite domain of metallo-dependent hydrolases Family:alpha-Subunit of urease 89 c2ro5B_ not modelled 9.9 22 PDB header:transcription Chain: B: PDB Molecule:stage v sporulation protein t; PDBTitle: rdc-refined solution structure of the n-terminal dna2 recognition domain of the bacillus subtilis transition-3 state regulator spovt 90 c2k29A_ not modelled 9.8 7 PDB header:transcription Chain: A: PDB Molecule:antitoxin relb; PDBTitle: structure of the dbd domain of e. coli antitoxin relb 91 c1kqgA_ not modelled 9.8 27 PDB header:oxidoreductase Chain: A: PDB Molecule:formate dehydrogenase, nitrate-inducible, major subunit; PDBTitle: formate dehydrogenase n from e. coli 92 c2kncB_ not modelled 9.7 15 PDB header:cell adhesion Chain: B: PDB Molecule:integrin beta-3; PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex 93 d2cqaa1 not modelled 9.7 28 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:TIP49 domain 94 d2etna2 not modelled 9.7 16 Fold:FKBP-like Superfamily:FKBP-like Family:GreA transcript cleavage factor, C-terminal domain 95 d2daha1 not modelled 9.6 12 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 96 c1ogyA_ not modelled 9.6 16 PDB header:oxidoreductase Chain: A: PDB Molecule:periplasmic nitrate reductase; PDBTitle: crystal structure of the heterodimeric nitrate reductase2 from rhodobacter sphaeroides 97 d1h9ra1 not modelled 9.5 24 Fold:OB-fold Superfamily:MOP-like Family:BiMOP, duplicated molybdate-binding domain 98 c1vlfQ_ not modelled 9.5 12 PDB header:oxidoreductase Chain: Q: PDB Molecule:pyrogallol hydroxytransferase large subunit; PDBTitle: crystal structure of pyrogallol-phloroglucinol2 transhydroxylase from pelobacter acidigallici complexed3 with inhibitor 1,2,4,5-tetrahydroxy-benzene 99 d2cu3a1 not modelled 9.4 17 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:ThiS