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 Protein Homology/analogY Recognition Engine V 2.0


 

New fold library entries added 2021 Jan 04

Fold library idPDB HeaderMoleculeTitle
c6z85J_ 2.90 hydrolase Chain: J: gtp cyclohydrolase 1;
c7krkB_ 1.40 oxidoreductase Chain: B: 3-oxoacyl-[acyl-carrier-protein] reductase;
c7audD_ 2.96 nuclear protein Chain: D: bloom syndrome protein,bloom syndrome protein;
c7jrjH_ 3.03 structural protein Chain: H: flagellar radial spoke protein 5;
c7apkg_ 3.30 gene regulation Chain: G: tho complex subunit 7 homolog;
c7kh2D_ 2.05 biosynthetic protein, lyase Chain: D: n-citrylornithine decarboxylase;
c6v8hA_ 2.31 allergen Chain: A: ara h 8 allergen isoform;
c7khwe_ 3.40 protein fibril Chain: E: translocon espa;
c6z4xF_ 2.98 transcription Chain: F: ring-type domain-containing protein;
c6tmhK_ 3.10 membrane protein Chain: K: subunit c;
c7cbsA_ 2.39 cell adhesion Chain: A: lpxtg cell wall anchor domain-containing protein;
c6yhiA_ UNK membrane protein Chain: A: amyloid-beta precursor protein g38l mutant;
c7d60I_ 2.61 transport protein Chain: I: calcium homeostasis modulator protein 5;
c7cupF_ 2.00 oxidoreductase Chain: F: 2,5-dihydroxypyridine 5,6-dioxygenase;
c6xl0O_ 3.40 structural protein Chain: O: flagellin;
c6vecf_ 3.90 protein fibril Chain: F: actin, alpha skeletal muscle;
c6lutB_ 1.35 isomerase Chain: B: probable serine racemase;
c6yhmA_ 1.13 toxin Chain: A: cytotoxic necrotizing factor;
c7jtks_ 3.20 structural protein Chain: S: flagellar radial spoke protein 10;
c6tk9B_ 2.50 transferase Chain: B: purine nucleoside phosphorylase;
c6tkxA_ 2.06 hydrolase Chain: A: carbohydrate esterase;
c6xrrH_ 1.90 chaperone Chain: H: putative cytoplasmic protein;
c7l3oA_ 2.10 ligase Chain: A: threonyl-trna synthetase;
c6y8zA_ 2.05 isomerase Chain: A: phosphoglucomutase 5;
c7d3uF_ 3.00 membrane protein Chain: F: monovalent na+/h+ antiporter subunit f;
c6vbkA_ 2.00 hydrolase Chain: A: lon211;
c7l32A_ 1.90 biosynthetic protein Chain: A: mpt synthase subunit 2;
c6z3uE_ 2.60 transcription Chain: E: protein kinase domain-containing protein;
c6yhkA_ 2.70 toxin Chain: A: cytotoxic necrotizing factor;
c7kzwA_ 1.34 unknown function Chain: A: ftt_1639c;
c7astK_ 4.00 transcription Chain: K: dna-directed rna polymerase iii subunit rpc5;
c7l3qA_ 2.15 ligase Chain: A: acetyl-coenzyme a synthetase;
c6xkwY_ 5.20 translocase/oxidoreductase Chain: Y: cytochrome c-type cyt cy;
c7cbcA_ 1.99 de novo protein Chain: A: de novo designed switch protein caging a hemagglutinin
c6xu3A_ 2.10 transferase Chain: A: class iv aminotransferase;
c7jtkB_ 3.20 structural protein Chain: B: flagellar radial spoke protein 1;
c6ve6D_ 2.45 hydrolase Chain: D: poly(aspartic acid) hydrolase-1;
c7agtB_ 2.90 transferase Chain: B: mycocerosic acid synthase;
c6tk0X_ UNK electron transport Chain: X: cytochrome c, mono-and diheme variants family;
c7jpuA_ 5.00 immune system Chain: A: lymphocyte antigen 75;
c7jtkC_ 3.20 structural protein Chain: C: flagellar radial spoke protein 2;
c7cp6B_ 2.20 oxidoreductase Chain: B: mak1-like monooxygenase;
c7cy4A_ 2.20 transferase Chain: A: maltodextrin-binding protein,5-methylcytosine-modifying
c6tmiB_ 3.50 membrane protein Chain: B: subunit b;
c6wmiD_ 2.75 transcription/dna Chain: D: zinc finger protein 410;
c6v7wF_ 3.00 dna binding protein/viral protein Chain: F: quorum sensing anti-activator protein aqs1;
c6ve2K_ 4.30 protein transport Chain: K: fimbrial assembly protein pilq;
c6x91D_ 3.51 hydrolase Chain: D: maltodextrin-binding protein, c->u-editing enzyme apobec-1
c7d3fC_ 2.30 electron transport Chain: C: dual oxidase 1;
c6yhxA_ UNK membrane protein Chain: A: amyloid-beta precursor protein i45t mutant;
c6lkdA_ 3.00 membrane protein Chain: A: kynurenine 3-monooxygenase;
c6xexB_ 1.80 oxidoreductase Chain: B: 2,3-butanediol dehydrogenase;
c7astL_ 4.00 transcription Chain: L: dna-directed rna polymerase iii subunit rpc4;
c6zpgA_ 4.60 motor protein Chain: A: kif-binding protein;
c6x05A_ 2.10 structural protein Chain: A: nucleoporin nup133;
c7a7bB_ 2.90 oxidoreductase Chain: B: ypda family putative bacillithiol disulfide reductase bdr;
c6ve2U_ 4.30 protein transport Chain: U: lysm domain-containing protein;
c7cysA_ 1.81 transferase Chain: A: agmatine coumaroyltransferase-1;
c7apkI_ 3.30 gene regulation Chain: I: tho complex subunit 1;
c6z7zG_ 2.40 hormone Chain: G: insulin;
c7d06B_ 3.10 membrane protein Chain: B: abc transporter atp-binding protein;
c7a76C_ 1.65 oxidoreductase Chain: C: thioredoxin reductase;
c6yhfA_ UNK membrane protein Chain: A: amyloid-beta precursor protein;
c7ae9B_ 2.90 toxin/antitoxin Chain: B: hepn toxin;
c7a17E_ 2.73 hydrolase Chain: E: isoform 2 of synaptojanin-1;
c6zq4E_ 2.02 transferase Chain: E: glycerol kinase-like protein;
c6lnrA_ 1.66 hydrolase Chain: A: class-1 chitinase;
c6z69A_ 1.81 hydrolase Chain: A: acetyl esterase/lipase;
c7c4hB_ 1.83 chaperone Chain: B: protein bcp1;
c6to4C_ 2.29 oxidoreductase Chain: C: coenzyme f420-dependent nadp oxidoreductase;
c6zmmB_ 2.96 lipid binding protein Chain: B: protein ndrg1;
c7k82A_ 2.10 gene regulation Chain: A: swi/snf and rsc complexes subunit ssr4;
c7jr9C_ 2.95 structural protein Chain: C: flagellar radial spoke protein 4;
c6xnsB_ 3.19 de novo protein Chain: B: c3_crown-05;
c7jtkO_ 3.20 structural protein Chain: O: flagellar radial spoke protein 9;
c6zfwD_ 1.58 protein transport Chain: D: peroxin-14;
c7cv2A_ 1.80 structural protein Chain: A: transcriptional regulator niar;
c6z7yE_ 2.20 hormone Chain: E: insulin;
c6yhpA_ UNK membrane protein Chain: A: amyloid-beta precursor protein v44m mutant;
c7apkm_ 3.30 gene regulation Chain: M: tho complex subunit 5 homolog;
c7jzzJ_ 3.20 hydrolase/rna Chain: J: acrf14;
c6vanA_ 1.33 metal binding protein Chain: A: caltubin, ef-hand;
c7jtkZ_ 3.20 structural protein Chain: Z: flagellar radial spoke protein 16;
c6lftA_ 1.57 hydrolase Chain: A: adp-ribose 1''-phosphate phosphatase;
c6x02A_ 6.38 structural protein Chain: A: nucleoporin nup84;
c6xssA_ 3.70 de novo protein Chain: A: c4_nat_hfuse-7900;
c6un9D_ 2.80 unknown function Chain: D: uncharacterized protein;
c7kljA_ 1.52 motor protein Chain: A: isoform 2 of kinesin-like protein kif21a;
c6tmhG_ 3.10 membrane protein Chain: G: oligomycin sensitivity conferring protein (oscp);
c7ad3F_ 3.50 membrane protein Chain: F: ste4 isoform 1;
c7dk3B_ 6.00 viral protein Chain: B: spike glycoprotein;
c7d6nF_ 3.17 transferase Chain: F: tick-borne encephalitis virus rna-dependent rna polymerase;
c7jl3E_ 4.20 hydrolase/transferase/rna Chain: E: antiviral innate immune response receptor rig-i;
c6yymA_ 2.63 rna binding protein Chain: A: meiosis protein mei2;
c7jtkk_ 3.20 structural protein Chain: K: flagellar radial spoke protein 6;
c7jrjD_ 3.03 structural protein Chain: D: flagellar radial spoke protein 6;
c7apkJ_ 3.30 gene regulation Chain: J: tho complex subunit 2;
c6yexB_ 1.50 hydrolase Chain: B: hnh endonuclease;
c7jh1A_ UNK cytokine Chain: A: xcl1 ancestor;
c6wmaA_ 2.50 hydrolase/dna Chain: A: apolipoprotein b mrna editing enzyme, catalytic peptide-
c6z7zE_ 2.40 hormone Chain: E: insulin;
c7atbA_ UNK membrane protein Chain: A: tumor necrosis factor;
c7ad3E_ 3.50 membrane protein Chain: E: guanine nucleotide-binding protein alpha-1 subunit,guanine
c6z00B_ 1.42 transferase Chain: B: acyl-coa n-acyltransferases (nat) superfamily protein;
c6vpdA_ 2.60 oxidoreductase Chain: A: glutathione peroxidase;
c7crcB_ 3.02 plant protein Chain: B: nad+ hydrolase (nadase);
c6z7wO_ 2.42 hormone Chain: O: insulin;
c7apkE_ 3.30 gene regulation Chain: E: tho complex subunit 5 homolog;
c6wxyB_ 2.10 dna binding protein Chain: B: cad1;
c7d3uE_ 3.00 membrane protein Chain: E: cation antiporter;
c6tmhi_ 3.10 membrane protein Chain: I: subunit c;
c7astJ_ 4.00 transcription Chain: J: dna-directed rna polymerase iii subunit rpc8;
c7clvA_ UNK protein transport Chain: A: tim23 isoform 1;
c6yggA_ 1.85 hydrolase Chain: A: afnadase;
c6yx5B_ 2.14 cell invasion Chain: B: multifunctional virulence effector protein drra;
c6xkzp_ 7.20 translocase/oxidoreductase Chain: P: cytochrome b;
c6wteA_ 1.67 transferase Chain: A: b12-binding domain-containing protein;
c7ckrA_ 3.00 transport protein Chain: A: monocarboxylate transporter 1;
c7ae9F_ 2.90 toxin/antitoxin Chain: F: mnt antitoxin;
c7jtkv_ 3.20 structural protein Chain: V: flagellar radial spoke protein 11;
c7jrjK_ 3.03 structural protein Chain: K: nucleoside diphosphate kinase 6;
c6z4xD_ 2.98 transcription Chain: D: cyclin domain-containing protein;
c7jtsm_ 6.10 structural protein Chain: M:
c7cf6A_ 2.75 metal binding protein Chain: A: isoaspartyl dipeptidase;
c7apkn_ 3.30 gene regulation Chain: N: tho complex subunit 6 homolog;
c6x02B_ 6.38 structural protein Chain: B: nucleoporin nup133;
c7ckqF_ 4.40 transcription Chain: F: rna polymerase sigma factor siga;
c7l0bD_ 1.65 hydrolase Chain: D: hydroxyacylglutathione hydrolase;
c6rsgA_ UNK antimicrobial protein Chain: A: pleurocidin;
c7jrjE_ 3.03 structural protein Chain: E: radial spoke protein 10;
c6x03C_ 7.30 structural protein Chain: C: vhh-san8;
c6m09C_ 2.10 plant protein Chain: C: at3g03890 protein;
c7astI_ 4.00 transcription Chain: I: dna-directed rna polymerase iii subunit rpc9;
c6lx0A_ 1.99 unknown function Chain: A: membrane protein;
c6lkyA_ 2.20 carbohydrate Chain: A: putative isocitrate dehydrogenase, nad-dependent;
c7jzwJ_ 3.20 hydrolase Chain: J: type i-f anti-crispr protein;
c6tmiG_ 3.50 membrane protein Chain: G: oligomycin sensitivity conferring protein (oscp);
c7apkK_ 3.30 gene regulation Chain: K: tho complex subunit 3;
c6xkxo_ 6.10 translocase/oxidoreductase Chain: O:
c6tmhd_ 3.10 membrane protein Chain: D: atp synthase subunit beta;
c6ljaA_ 1.98 lyase Chain: A: heparinase ii/iii-like protein;
c7df2A_ 1.70 metal binding protein Chain: A: c2 domain protein;
c7jl2F_ 4.30 hydrolase/immune system/rna Chain: F: tripartite motif-containing protein 65;
c6vc6D_ 2.13 hydrolase Chain: D: 6-phospho-alpha-glucosidase;
c7k34C_ 1.66 biosynthetic protein, synthase Chain: C: threonine aldolase;
c7jl3D_ 4.20 hydrolase/transferase/rna Chain: D: e3 ubiquitin-protein ligase rnf135;
c7dd0C_ 2.70 transprot protein, translocase Chain: C: teichoic acids export atp-binding protein tagh;
c7jtkU_ 3.20 structural protein Chain: U: flagellar radial spoke protein 11;
c6xt4A_ 2.40 de novo protein Chain: A: 1bh_69;
c6usmB_ 3.37 replication Chain: B: non-structural protein ns1;
c7d3uG_ 3.00 membrane protein Chain: G: monovalent na+/h+ antiporter subunit g;
c7jtkX_ 3.20 structural protein Chain: X: flagellar radial spoke protein 14;
c6v67B_ 1.07 de novo protein Chain: B: pd-1 binding miniprotein gr918.2;
c7cmhB_ 3.40 membrane protein Chain: B: large neutral amino acids transporter small subunit 2;
c6xrrJ_ 1.90 chaperone Chain: J: rhs repeat protein;
c7kqqA_ 1.80 nuclear protein Chain: A: wd repeat-containing protein 55;
c7asuA_ 2.23 transcription Chain: A: dna-directed rna polymerase iii subunit rpc5;
c7ckrB_ 3.00 transport protein Chain: B: basigin;
c7cfaA_ 2.36 lyase Chain: A: r.pab1 family restriction endonuclease;
c6v82A_ 2.42 lyase Chain: A: tryptophan synthase alpha chain;
c7aavP_ 4.20 splicing Chain: P: pre-mrna-splicing factor rbm22;
c7al4D_ 3.00 flavoprotein Chain: D: ancestral flavin-containing monooxygenase 1 (mammalian);
c6v7wE_ 3.00 dna binding protein/viral protein Chain: E: transcriptional regulator lasr;
c7jtkH_ 3.20 structural protein Chain: H: flagellar radial spoke protein 4;
c7astH_ 4.00 transcription Chain: H: dna-directed rna polymerases i and iii subunit rpac1;
c6xrrG_ 1.90 chaperone Chain: G: rhs repeat protein;
c6pgwA_ 3.00 cell adhesion Chain: A: protocadherin-19;
c7jrjI_ 3.03 structural protein Chain: I: flagellar radial spoke protein 2;
c7jjaA_ 1.01 metal binding protein Chain: A: zinc-binding lipoprotein adca;
c6y4bA_ 5.00 rna binding protein Chain: A: cyclodipeptide synthase;
c6w9nA_ UNK lipid binding protein Chain: A: wd repeat and fyve domain-containing protein 3;
c6z7wM_ 2.42 hormone Chain: M: insulin;
c7jh6D_ 3.50 de novo protein Chain: D: two-domain di-zn(ii) and porphyrin-binding protein;
c7a2dA_ UNK protein binding Chain: A: dolp;
c6yejA_ 18.20 structural protein Chain: A: huntingtin;
c6y8qA_ 1.83 antitoxin Chain: A: abortive phage infection protein;
c6lnkB_ 2.64 lyase Chain: B: fructose-bisphosphate aldolase;
c7jtkM_ 3.20 structural protein Chain: M: flagellar radial spoke protein 7;
c7jrjG_ 3.03 structural protein Chain: G: flagellar radial spoke protein 3;
c6xrfI_ 2.56 chaperone Chain: I: paar motif family protein;
c6v67A_ 1.07 de novo protein Chain: A: pd-1 binding miniprotein gr918.2;
c7jtkW_ 3.20 structural protein Chain: W: flagellar radial spoke protein 12;
c6xkxn_ 6.10 translocase/oxidoreductase Chain: N:
c7cceA_ 2.40 gene regulation Chain: A: bromo-adjacent homology (bah) domain-containing protein;
c7akcA_ 1.60 transferase Chain: A: phenolpthiocerol synthesis type-i polyketide synthase ppsa;
c7ak1A_ 2.51 hydrolase Chain: A: mucosa-associated lymphoid tissue lymphoma translocation
c6zqqA_ 1.90 peptide binding protein Chain: A: pmt3 isoform 1;
c7jtkz_ 3.20 structural protein Chain: Z: flagellar radial spoke protein 16;
c7ckaA_ 1.06 oxidoreductase Chain: A: heme oxygenase 1;
c7jtsE_ 6.10 structural protein Chain: E: radial spoke protein 3;
c6ljhA_ 1.80 oxidoreductase Chain: A: alcohol dehydrogenase 1;
c6x05K_ 2.10 structural protein Chain: K: vhh-san4;
c7jtkV_ 3.20 structural protein Chain: V: flagellar radial spoke protein 11;
c6xrfF_ 2.56 chaperone Chain: F: paar motif family protein;
c7dk3C_ 6.00 viral protein Chain: C: spike glycoprotein;
c7ad3B_ 3.50 membrane protein Chain: B: pheromone alpha factor receptor;
c7c7lB_ 3.00 rna binding protein/rna/dna Chain: B: crispr-associated protein cas14a.1;
c7dl2C_ 4.40 gene regulation Chain: C: hamartin;
c7a8pA_ 3.50 transcription Chain: A: dna-directed rna polymerase, mitochondrial;
c7astG_ 4.00 transcription Chain: G: dna-directed rna polymerases i and iii subunit rpac2;
c7asvB_ 1.55 transcription Chain: B: dna-directed rna polymerase iii subunit rpc5;
c6xj1A_ 3.52 cell cycle Chain: A: cell division control protein 15;
c6lfvA_ 1.90 immune system Chain: A: pcb4scfv(hn56d);
c6tp5A_ 2.25 oxidoreductase Chain: A: transmembrane prolyl 4-hydroxylase;
c6zmpB_ 1.57 cytosolic protein Chain: B: n-terminal acetyltransferase-like protein;
c6tmhg_ 3.10 membrane protein Chain: G: oligomycin sensitivity conferring protein (oscp);
c7byjA_ 2.49 protein binding Chain: A: ferm and pdz domain-containing protein 4;
c7jj8B_ 2.03 metal binding protein Chain: B: zinc-binding lipoprotein adca;
c7ahbA_ 1.90 transferase Chain: A: phthiocerol synthesis polyketide synthase type i ppsc;
c6z7yG_ 2.20 hormone Chain: G: insulin;
c7d68R_ 3.00 biosynthetic protein Chain: R: glucagon-like peptide 2 receptor;
c7asyA_ UNK membrane protein Chain: A: tumor necrosis factor;
c6v82B_ 2.42 lyase Chain: B: tryptophan synthase beta chain;
c6tmhA_ 3.10 membrane protein Chain: A: atp synthase subunit alpha,subunit alpha;
c7c7lA_ 3.00 rna binding protein/rna/dna Chain: A: crispr-associated protein cas14a.1;
c7d6mB_ 1.89 transferase Chain: B: tick-borne encephalitis virus methyltransferase;
c6tneA_ 1.25 transferase Chain: A: cell cycle histidine kinase ccka;
c7dfpA_ 3.10 membrane protein Chain: A: d(2) dopamine receptor,soluble cytochrome b562;
c6xrfC_ 2.56 chaperone Chain: C: paar motif family protein;
c6ph4A_ 3.25 transferase Chain: A: blue-light-activated histidine kinase;
c6ph4B_ 3.25 transferase Chain: B: blue-light-activated histidine kinase;
c7d3uA_ 3.00 membrane protein Chain: A: monovalent na+/h+ antiporter subunit a;
c6lgqC_ 3.00 signaling protein Chain: C: histidine kinase kdpd;
c6z7wK_ 2.42 hormone Chain: K: insulin;
c7jtkF_ 3.20 structural protein Chain: F: flagellar radial spoke protein 3;
c6vlwG_ 3.42 immune system/viral protein Chain: G: 426cod;
c6tmhe_ 3.10 membrane protein Chain: E: atp synthase subunit alpha,subunit alpha;
c6rsfA_ UNK antimicrobial protein Chain: A: pleurocidin;
c7ccsB_ 6.20 transport protein Chain: B: consensus mutated anionic amino acid transporter light
c7abh7_ 4.50 splicing Chain: 7: dna/rna-binding protein kin17;
c6yt3B_ 2.85 structural protein Chain: B: thioredoxin,molybdenum storage protein subunit beta;
c6xrrL_ 1.90 chaperone Chain: L: rhs repeat protein;
c6tlhA_ 1.80 cell adhesion Chain: A: kn motif and ankyrin repeat domain-containing protein 3;
c6xkwh_ 5.20 translocase/oxidoreductase Chain: H:
c7astN_ 4.00 transcription Chain: N: dna-directed rna polymerase iii subunit rpc1;
c7ckqC_ 4.40 transcription Chain: C: dna-directed rna polymerase subunit beta;
c7astA_ 4.00 transcription Chain: A: dna-directed rna polymerase iii subunit rpc10;
c6tmiC_ 3.50 membrane protein Chain: C: atp synthase subunit alpha;
c7astZ_ 4.00 transcription Chain: Z: dna-directed rna polymerase iii subunit rpc6;
c7jtss_ 6.10 structural protein Chain: S:
c7aavK_ 4.20 splicing Chain: K: microfibrillar-associated protein 1;
c7cfvA_ UNK splicing Chain: A: spl dnax mini-intein;
c6lkzD_ 2.80 biosynthetic protein Chain: D: isocitrate dehydrogenase;
c6tmiR_ 3.50 membrane protein Chain: R: atptg12;
c7d3uD_ 3.00 membrane protein Chain: D: monovalent na+/h+ antiporter subunit d;
c7br0A_ 2.00 oxidoreductase Chain: A: pyr_redox_2 domain-containing protein;
c7jtkj_ 3.20 structural protein Chain: J: flagellar radial spoke protein 5;
c6xyrA_ 2.08 structural protein Chain: A: t4lnano,endolysin,calmodulin,endolysin,calmodulin-1;
c7bx9A_ 1.38 oxidoreductase Chain: A: azoreductase;
c7dl2A_ 4.40 gene regulation Chain: A: isoform 7 of tuberin;
c6xjbA_ 3.80 immune system Chain: A: immunoglobulin a1 protease;
c7anvA_ 1.65 oxidoreductase Chain: A: ancestral d-type dye decolorizing peroxidase;
c7clvC_ UNK protein transport Chain: C: cox4 isoform 1;
c7l4aA_ 1.50 transferase Chain: A: cytidylate kinase;
c6tmiA_ 3.50 membrane protein Chain: A: subunit d;
c7aldA_ UNK antimicrobial protein Chain: A: brichos domain-containing protein;
c7jj9A_ 1.58 metal binding protein Chain: A: zinc-binding lipoprotein adca;
c7astM_ 4.00 transcription Chain: M: dna-directed rna polymerase iii subunit rpc2;
c7dl2B_ 4.40 gene regulation Chain: B: isoform 7 of tuberin;
c6ttlB_ 2.90 oxidoreductase Chain: B: [fefe]-hydrogenase;
c7ad3G_ 3.50 membrane protein Chain: G: guanine nucleotide-binding protein subunit gamma;
c6yhoA_ UNK membrane protein Chain: A: amyloid-beta precursor protein g38p mutant;
c7d3uC_ 3.00 membrane protein Chain: C: monovalent na+/h+ antiporter subunit c;


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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