PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c7ckrB_

Fold library id	PDB Header	Molecule	Title
c7ckrB_	3.00	PDB header: transport protein	Chain: B: PDB Molecule: basigin;

Links to external resources
Added to library: Mon Jan 4 14:26:17 2021

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence A G T V F T T V E D L G S K I L L T C S L N D S A T E V T G H R W L K G G V V L K E D A L P G Q K T E F K V D S D D Q W G E Y S C V F L P E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S
S S
S S S
T T
S S G G G
S S S T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence P M G T A N I Q L H G P P R V K A V K S S E H I N E G E T A M L V C K S E S V P P V T D W A W Y K I T D S E D K A L M N G S E S R F F V S S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S
S
S
S T T S
S S
S S
T T B T T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence S Q G R S E L H I E N L N M E A D P G Q Y R C N G T S S K G S D Q A I I T L R V R S H L A A L W P F L G I V A E V L V L V T I I F I Y E K R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S
T T T S S T T
S S T T

. . . . .

Sequence R K P E D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	A	G	T	V	F	T	T	V	E	D	L	G	S	K	I	L	L	T	C	S	L	N	D	S	A	T	E	V	T	G	H	R	W	L	K	G	G	V	V	L	K	E	D	A	L	P	G	Q	K	T	E	F	K	V	D	S	D	D	Q	W	G	E	Y	S	C	V	F	L	P	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)												T	T										S		S	S									S	S	S						T	T			S	S								G	G	G			S							S	S	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	P	M	G	T	A	N	I	Q	L	H	G	P	P	R	V	K	A	V	K	S	S	E	H	I	N	E	G	E	T	A	M	L	V	C	K	S	E	S	V	P	P	V	T	D	W	A	W	Y	K	I	T	D	S	E	D	K	A	L	M	N	G	S	E	S	R	F	F	V	S	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	S										S						S		S						T	T	S											S	S												S	S							T	T	B	T	T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	S	Q	G	R	S	E	L	H	I	E	N	L	N	M	E	A	D	P	G	Q	Y	R	C	N	G	T	S	S	K	G	S	D	Q	A	I	I	T	L	R	V	R	S	H	L	A	A	L	W	P	F	L	G	I	V	A	E	V	L	V	L	V	T	I	I	F	I	Y	E	K	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	T								S			T	T	T	S	S										T	T														S	S	T	T
	.	.	.	.	.
Sequence	R	K	P	E	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)