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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c7dk3B_

Fold library idPDB HeaderMoleculeTitle
c7dk3B_6.00PDB header: viral proteinChain: B: PDB Molecule: spike glycoprotein;


Added to library: Mon Jan 4 13:02:07 2021
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence QCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHKRFDNPVLPFNDGV
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Known secondary structure (DSSP)




SS
B





SSTT
B

SS



SS

TT



B





SS
 .........80.........90.........100.........110.........120.........130.........140
Sequence YFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVY
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Known secondary structure (DSSP) SS



SSSSTTS

SS



SS




SSS




S
 .........150.........160.........170.........180.........190.........200.........210
Sequence SSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPLVDLP
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Known secondary structure (DSSP) S












SSB
TT


BSSS


S


B
 .........220.........230.........240.........250.........260.........270.........280
Sequence IGINITRFQTLLALHRSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFT
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Known secondary structure (DSSP)






B



S
B

S

TTSSSSSSTSSS
 .........290.........300.........310.........320.........330.........340.........350
Sequence VEKGIYQTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTF
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Known secondary structure (DSSP)

S












B

STTTTS
SS

BSSS

SSB


STT

S
 .........360.........370.........380.........390.........400.........410.........420
Sequence KCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGG
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Known secondary structure (DSSP) SSS
SSS

SGGGSTT
STT

ST








TT


TTTT

TT
 .........430.........440.........450.........460.........470.........480.........490
Sequence NYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFEL
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Known secondary structure (DSSP)
TT
S

SS


TT








SSS

TTS
BTT





TTS
TTTS
 .........500.........510.........520.........530.........540.........550.........560
Sequence LHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDI
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Known secondary structure (DSSP) SSS





S







SSTT





TT


TTSS
SSS

 .........570.........580.........590.........600.........610.........620.........630
Sequence TPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTS
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Known secondary structure (DSSP)
SS
S

TTT



T

S




SSSS

S
B

STT

 .........640.........650.........660.........670.........680.........690.........700
Sequence QSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSF
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Known secondary structure (DSSP)
B










TT




SSS
TTTT
 .........710.........720.........730.........740.........750.........760.........770
Sequence CTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKVTKF
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Known secondary structure (DSSP) TT


SS




SS


TT


TTTSB
TTSSS

B



 .........780.........790.........800.........810.........820.........830.........840
Sequence NGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIAN
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Known secondary structure (DSSP) SS

SS
TTTSS




TTT

T
 .........850.........860.........870.........880.........890.........900.........910
Sequence QFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDR
Predicted secondary structure
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Known secondary structure (DSSP)
SGGGGGG

TTSS
S
TTS
 .........920.........930.........940.........950.........960.........970.........980
Sequence LITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHV
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Known secondary structure (DSSP) TTTS


STTTS
SSTT
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence TYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNN
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Known secondary structure (DSSP) S
SSSSSSS
SSS
SSS



BTTT
S
TTTSTT

 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence TVYDPLQPELDSQCVNLTTRTQLPPAYRGVYYPDKVFRSSVLHSTDLFLVTWFHAIHKRFDNPVLPFNDG
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Known secondary structure (DSSP)

B
T





SS










B

SS

S
B











B




TT
 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence VYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRV
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Known secondary structure (DSSP) SS



SSSSTTS

SSS


SS

B




SSS






B
S
 .........1200.........1210.........1220.........1230.........1240.........1250.........1260
Sequence YSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPIFSALEPLVDLPIGINITRF
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Known secondary structure (DSSP)
S












SS

TT




B


S


 .........1270.........1280.........1290.........1300.........1310....
Sequence QTLLALHRSSSGWTAGAAAYYVGYLFLKYNENGTITYNSAFFKCYGVSPTKGQD
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Known secondary structure (DSSP)





TT





BB
TTS
B








SSS
S





Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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