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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c7astM_

Fold library idPDB HeaderMoleculeTitle
c7astM_4.00PDB header: transcriptionChain: M: PDB Molecule: dna-directed rna polymerase iii subunit rpc2;


Added to library: Mon Jan 4 13:31:07 2021
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence IPTVEEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVTSDADPMWYLKYLNIYVGLPDVEE
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Known secondary structure (DSSP)

SSSSTTTS
SSTTTS



TTTTTT




BS


SS
SS
SS
 .........80.........90.........100.........110.........120.........130.........140
Sequence SFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKTPAEFAKLN
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Known secondary structure (DSSP)
SS
SSS

STTTSSS




B


B
B



TT






B

S
B


TTSSSSSSSS

TTTTTTT
 .........150.........160.........170.........180.........190.........200.........210
Sequence ECPLDPGGYFIVKGVEKVILIQEQLSKNRIIVEADRKGAVGASVTSSTHEKKSRTNMAVKQGRFYLRHNT
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Known secondary structure (DSSP)

S





TT
B


SS



SS



SSS




SSS

SS
 .........220.........230.........240.........250.........260.........270.........280
Sequence LSEDIPIVIIFKAMGVESDQEIVQMIGTEEHVMAAFGPSLEECQKAQIFTQMQALKYIGNKVRRQRMWGG
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Known secondary structure (DSSP)
SS


TT



SS



SSSSSSS
SGGGGGGG
 .........290.........300.........310.........320.........330.........340.........350
Sequence GPKKTKIEEARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVILAQGDNKVDDRDYYGNKRLELAGQLL
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Known secondary structure (DSSP)

S



SGGGGGG
SS


SSTTTTTS
SSTTS



S

TTT


 .........360.........370.........380.........390.........400.........410.........420
Sequence SLLFEDLFKKFNSEMKKIADQVIPKQRAAQFDVVKHMRQDQITNGMVNAISTGNWSLKRFKMDRQGVTQV
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Known secondary structure (DSSP)
TT

SSTTS
TTT


TT



SSSS

S
 .........430.........440.........450.........460.........470.........480.........490
Sequence LSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDG
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Known secondary structure (DSSP)

TTSSSS



SSTTS
SSSS

GGGTTTS
SS


SSSSSSS

SS

B




S
 .........500.........510.........520.........530.........540.........550.........560
Sequence PIVKLASNLGVEDVNLLCGEELSYPNVFLVFLNGNILGVIRDHKKLVNTFRLMRRAGYINEFVSISTNLT
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Known secondary structure (DSSP) T


GGG

S



TT




TTB




S
TTTSS
S




TT
 .........570.........580.........590.........600.........610.........620.........630
Sequence DRCVYISSDGGRLCRPYIIVKKQKPAVTNKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIALYEHT
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Known secondary structure (DSSP) TT

SSS
B

TTTS
TTTTTSTTS
S
SSTTSSSSS
SS


S
STT
 .........640.........650.........660.........670.........680.........690.........700
Sequence INKDTTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPM
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Known secondary structure (DSSP)

TT
S
S
GGGSS
TTTTTSSSTTTS
S




SSGGG


TT

B
SS
B

S
 .........710.........720.........730.........740.........750.........760.........770
Sequence VKTKTIELIEFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDK
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Known secondary structure (DSSP)
TSTTSS




TTTSTTT


TTTTTTTTT

BB










SSS
SSS
 .........780.........790.........800.........810.........820.........830.........840
Sequence VMGPMLDAATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQIPLEGSNVPQQPQYKDVPITYK
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Known secondary structure (DSSP)







SSSTT
TTTSSS
TTSS

SS



SS

SB




TTSS
TTT

SS
SS






B


 .........850.........860.........870.........880.........890.........900.........910
Sequence GATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIM
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Known secondary structure (DSSP)
SS





TT




B




TT
BB

SSS







GGGS
B
SSS


S
 .........920.........930.........940.........950.........960.........970.........980
Sequence NPHGFPSRMTVGKLIELLAGKAGVLDGRFHYGTAFGGSKVKDVCEDLVRHGYNYLGKDYVTSGITGEPLE
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Known secondary structure (DSSP)
TTSSTTT


SSTTSSS



TT



TTS
SS


B
TTTSSB
S
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence AYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLM
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Known secondary structure (DSSP) S


B
S

SSTT



S




SSS




SSSS
SS




S

 .........1060.........1070.........1080.........1090.........1100.........1110....
Sequence ISSDAFEVDVCGQCGLLGYSGWCHYCKSSCHVSSLRIPYACKLLFQELQSMNIIPRLKLSKYNE
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Known secondary structure (DSSP) TSS

B

SSS

SB
SSS
SS


SS




S









S


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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