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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c7ckqF_

Fold library idPDB HeaderMoleculeTitle
c7ckqF_4.40PDB header: transcriptionChain: F: PDB Molecule: rna polymerase sigma factor siga;


Added to library: Mon Jan 4 13:22:39 2021
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence DPVRMYLKEIGRVNLLSAKEEIAYAQKIEEGDEESKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNM
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Known secondary structure (DSSP)
SS



T
SSTTTS

TTS
 .........80.........90.........100.........110.........120.........130.........140
Sequence GLMKAVEKFDYRKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPTP
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Known secondary structure (DSSP) TTTT


S


S
TSSSSS


SS


 .........150.........160.........170.........180.........190.........200.........210
Sequence EEIAEDMDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPSDHAAYELLKEQLEDVLDT
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Known secondary structure (DSSP) TTSSSS
TTS



TT

SSS
SS

GGGT


SSS

TTTS
SS
 .........220.........230.........240.........250.........260.........270..
Sequence LTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFLE
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Known secondary structure (DSSP)
SSSTTTTSSS


TTTT

SSTTTSTTTGGGT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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