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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c7ckqC_

Fold library idPDB HeaderMoleculeTitle
c7ckqC_4.40PDB header: transcriptionChain: C: PDB Molecule: dna-directed rna polymerase subunit beta;


Added to library: Mon Jan 4 13:49:01 2021
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence VQYGRHRQRRSYARISEVLELPNLIEIQTSSYQWFLDEGLREMFQDISPIEDFTGNLSLEFIDYSLGEPK
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Known secondary structure (DSSP)


SSSS



SS

SS



SSTTTTTTS
S


SSS



S
 .........80.........90.........100.........110.........120.........130.........140
Sequence YPVEESKERDVTYSAPLRVKVRLINKETGEVKDQDVFMGDFPIMTDTGTFIINGAERVIVSQLVRSPSVY
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Known secondary structure (DSSP) S
SSST





SSSS








TTS

TT




SS
 .........150.........160.........170.........180.........190.........200.........210
Sequence FSGKVDKNGKKGFTATVIPNRGAWLEYETDAKDVVYVRIDRTRKLPVTVLLRALGFGSDQEILDLIGENE
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Known secondary structure (DSSP)


TTS




SSS



TTS

TT
S
STTSS
S
TTS
 .........220.........230.........240.........250.........260.........270.........280
Sequence YLRNTLDKDNTENSDKALLEIYERLRPGEPPTVENAKSLLDSRFFDPKRYDLANVGRYKINKKLHIKNRL
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Known secondary structure (DSSP) SSSSSSSSSS
S
S
SS







S
SS


TTT
 .........290.........300.........310.........320.........330.........340.........350
Sequence FNQYIEEEIKNITPADIISSISYFFNLLHGVGDTDDIDHLGNRRLRSVGELLQNQFRIGLSRMERVVRER
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Known secondary structure (DSSP)



SS
SSS
T
S



SS
GGG
TTT
 .........360.........370.........380.........390.........400.........410.........420
Sequence MSIQDTNTITPQQLINIRPVIASIKEFFGSSQLSQFMDQTNPLAELTHKRRLSALGPGGLTRERAGMEVR
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Known secondary structure (DSSP) TTS

SS

S
STTTSSS





S
S

STTS

GGG

 .........430.........440.........450.........460.........470.........480.........490
Sequence DVHYSHYGRMCPIETPEGPNIGLINSLSSYAKVNRFGFIETPYRRVDPETGKVTGRIDYLTADEEDNYVV
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Known secondary structure (DSSP) S

GGGTTTSS


SSS
TTTS
SS

SSS

TTTTT


S

STTTTTS
 .........500.........510.........520.........530.........540.........550.........560
Sequence AQANARLDDEGAFIDDSIVARFRGENTVVSRNRVDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQ
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Known secondary structure (DSSP)
SS



SS


SSS

SSS
TTT

S
GGGGS
TSTTTTTB
TT
 .........570.........580.........590.........600.........610.........620.........630
Sequence RQAVPLMQPEAPFVGTGMEYVSGKDSGAAVICKHPGIVERVEAKNVWVRRYEEVDGQKVKGNLDKYSLLK
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Known secondary structure (DSSP) SB

BSS



SS

S
TTSSSS
B


SS

SS




SSS









 .........640.........650.........660.........670.........680.........690.........700
Sequence FVRSNQGTCYNQRPIVSVGDEVVKGEILADGPSMELGELALGRNVMVGFMTWDGYNYEDAIIMSERLVKD
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Known secondary structure (DSSP) S


TTSB




B


TT



TTSBSB

TTTT

S



TT

SSS
B
B
TT
 .........710.........720.........730.........740.........750.........760.........770
Sequence DVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEDALRNLDDRGIIRIGAEVKDGDLLVGKVTPKGVTEL
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Known secondary structure (DSSP) TSS
B
SSSB

S

TT

STTTSSB
SSSBB
TT

TT
BSB



S



 .........780.........790.........800.........810.........820.........830.........840
Sequence TAEERLLHAIFGEKAREVRDTSLRVPHGGGGIIHDVKVFNREDGDELPPGVNQLVRVYIVQKRKISEGDK
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Known secondary structure (DSSP)
TTTSSS



S

B


B

TT


TTTT



TT


TT
 .........850.........860.........870.........880.........890.........900.........910
Sequence MAGRHGNKGVISKILPEEDMPYLPDGTPIDIMLNPLGVPSRMNIGQVLELHMGMAARYLGIHIASPVFDG
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Known secondary structure (DSSP)
TTS
B




TTTS
B
TTS
B


TTSTBSSS


SSSS
 .........920.........930.........940.........950.........960.........970.........980
Sequence AREEDVWETLEEAGMSRDAKTVLYDGRTGEPFDNRVSVGIMYMIKLAHMVDDKLHARSTGPYSLVTQQPL
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Known secondary structure (DSSP)

ST
SSS



B
TTTSS

SS





BSS
TTTS



SS

B
TTT
SB
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence GGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTVKSDDVVGRVKTYEAIVKGDNVPEPGVPESFKVLIKE
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Known secondary structure (DSSP)
STTTT





T
STTTT
TTTTTTT








 .........1060.
Sequence LQSLGMDVKIL
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Known secondary structure (DSSP) TT






Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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