Standard Mode | Switch to Expert Mode | Login to view past jobsRetrieve Phyre Job Id
 
Subscribe to Phyre at Google Groups
Email:
Visit Phyre at Google Groups
 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6x02B_

Fold library idPDB HeaderMoleculeTitle
c6x02B_6.38PDB header: structural proteinChain: B: PDB Molecule: nucleoporin nup133;


Added to library: Mon Jan 4 18:15:08 2021
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence GFSLDQESIEHDLKLTSEEIFHSNGKYIPPMLNTLGQHLSVRKEFFQNFLTFVAKNFNYKISPELKLDLI
Predicted secondary structure





















SS confidence





































































Known secondary structure (DSSP)
TT

SSS
SSSSS

TSS


TT
 .........80.........90.........100.........110.........120.........130.........140
Sequence EKFEILNCCIKFNSIIRQSDVLNDIWEKTLSNYNLTQNEHLTTKTVVINSPDVFPVIFKQFLNHVVFVLF
Predicted secondary structure















SS confidence





































































Known secondary structure (DSSP) TTT
SSS

TT
TTTTTTTT
 .........150.........160.........170.........180.........190.........200.........210
Sequence PSQNQNFKLNVTNLINLCFYDGILEEGEKTIPWFINFDYLNCINQCFFDFTFACEEEGSLDSYKEGLLKI
Predicted secondary structure
















SS confidence





































































Known secondary structure (DSSP) TS
TTSSTTTTTTT


TTSTTTTTTTS
 .........220.........230.........240.........250.........260.........270.........280
Sequence VKILYYQFNQFKIWINTQPVKSVNANDNFININNLYDDNHLDWNHVLCKVNLKEQCIQIAEFYKDLSGLV
Predicted secondary structure









SS confidence





































































Known secondary structure (DSSP) TT

TTT
S

TTS


 .........290.........300.........310.........320.........330.........340.........350
Sequence QTLQTLDQNDSTTVSLYETFFNEFPKEFSFTLFEYLIKHQQHDVLIQFFQESAPKYGHVAWIQQILDGSY
Predicted secondary structure















SS confidence





































































Known secondary structure (DSSP) TTSS


GGG
S
GGGG




SGGGTT
S

TTTTTTS

 .........360.........370.........380.........390.........400.........410.........420
Sequence ADAMNTLKNITVDDSKKGESLSECELHLNVAKLSSINTLRKIQYNLDTIDAEKNISNKLKKGEVQICKRF
Predicted secondary structure









SS confidence





































































Known secondary structure (DSSP) SSS




T
S


SS
 .........430.........440.........450.........460.........470.........480.........490
Sequence KNGSIREVFNILVEELKSTTVVNLSDLVELYSMLDDEESLFIPLRILSVDGDLLNFEVKKFLNALVWRRI
Predicted secondary structure


















SS confidence





































































Known secondary structure (DSSP)
S
TT

ST




SSTS

SS
 .........500.........510.........520.........530.........540.........550.........560
Sequence VLLNASNEGDKLLQHIVKRVFDEELPKNNDFPLPSVDLLCDKSLLTPEYISETYGRFPIDQNAIREEIYE
Predicted secondary structure
























SS confidence





































































Known secondary structure (DSSP) STTT
STTTTTSS





S

TT

T
SS
S
 .........570.........580.........590.........600..
Sequence EISQVETLNSDNSLEIKLHSTIGSVAKEKNYTINYETNTVEY
Predicted secondary structure












SS confidence









































Known secondary structure (DSSP)
GGGTTTSS

TTTT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Michael Sternberg 
Disclaimer
Terms and Conditions
Structural Biology Group logo Imperial logo
BBSRC logo
Phyre2 is part of Genome3D