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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c7dk3C_

Fold library idPDB HeaderMoleculeTitle
c7dk3C_6.00PDB header: viral proteinChain: C: PDB Molecule: spike glycoprotein;


Added to library: Mon Jan 4 13:05:43 2021
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence CYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNK
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Known secondary structure (DSSP)


S

B
TT

GGGS

SS












SSTT
S
 .........80.........90.........100.........110.........120.........130.........140
Sequence KFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVNVFQTRA
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Known secondary structure (DSSP)


TT

B


TTS



SSS









TTT



TS
S




SS
 .........150.........160.........170.........180.........190.........200.........210
Sequence GCLIGAEHVNNSYECDIPIGAGICASYQTSQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPV
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Known secondary structure (DSSP) SS

S
B

STT


B










TT
 .........220.........230.........240.........250.........260.........270.........280
Sequence SMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGG
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Known secondary structure (DSSP)




SSS

TT


SS




S


SSS
 .........290.........300.........310.........320.........330.........340.........350
Sequence FNFSQILPDPSKPSKRSFIEDLLFNKVTKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQ
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Known secondary structure (DSSP)


TTTSTTSSS
S



SS


SS
TTTSS


 .........360.........370.........380.........390.........400.........410.........420
Sequence IPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQ
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Known secondary structure (DSSP)

TTT

T
S
TTG
 .........430.........440.........450.........460.........470.........480.........490
Sequence LSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG
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Known secondary structure (DSSP) GG

TTSS
S
S
TTTS
 .........500.........510.........520.........530.........540.........550.........560
Sequence QSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVT
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Known secondary structure (DSSP)


STTTSSSSTT
S
SSSSSSSSSSS
 .........570.........580.........590.........600.........610.........620.........630
Sequence QRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSTNSFTPFFSNNLVRDLPQGLDAVDCALD
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Known secondary structure (DSSP)
TTS



BTTT
S
TTTSTT



B
TTTGGGG






TT



SSS








TTS
 .........640.........650.........660.........670.........680.........690.........700
Sequence PLSETKSFTVEKGIYQTSFVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKISNCVADYSVLSST
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Known secondary structure (DSSP)


S

S






S


S

B
SST
SS


STT



SSB


S




 .........710.........720.........730.........740.........750.........760.........770
Sequence LNDLCFTNVYADSFVIRGDEVRQIAPTGKIADYNYKLPDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKS
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Known secondary structure (DSSP)
TT
STT




T










B


TT
BTT



SS
 .........780....
Sequence NLKPFERDISTEIY
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Known secondary structure (DSSP)


TT









Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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