Email l.a.kelley@imperial.ac.uk Description P0AAR8 Date Thu Jan 5 11:13:37 GMT 2012 Unique Job ID fef51e084622ec8e

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d2edua1 99.7 33 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:ComEA-like 2 d3bzka1 99.7 34 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Tex HhH-containing domain-like 3 d2duya1 99.7 42 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:ComEA-like 4 c1s5lu_ 99.7 20 PDB header:photosynthesis Chain: U: PDB Molecule:photosystem ii 12 kda extrinsic protein; PDBTitle: architecture of the photosynthetic oxygen evolving center 5 d2axtu1 99.7 22 Fold:SAM domain-like Superfamily:PsbU/PolX domain-like Family:PsbU-like 6 c2oceA_ 99.4 34 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein pa5201; PDBTitle: crystal structure of tex family protein pa5201 from2 pseudomonas aeruginosa 7 c3psiA_ 99.1 20 PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor spt6; PDBTitle: crystal structure of the spt6 core domain from saccharomyces2 cerevisiae, form spt6(239-1451) 8 c3psfA_ 99.0 21 PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor spt6; PDBTitle: crystal structure of the spt6 core domain from saccharomyces2 cerevisiae, form spt6(236-1259) 9 d2bgwa1 98.2 19 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Hef domain-like 10 d1x2ia1 97.9 20 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Hef domain-like 11 c1kftA_ 97.8 29 PDB header:dna binding protein Chain: A: PDB Molecule:excinuclease abc subunit c; PDBTitle: solution structure of the c-terminal domain of uvrc from e-2 coli 12 d1kfta_ 97.8 29 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Excinuclease UvrC C-terminal domain 13 d3ci0k2 97.7 24 Fold:SAM domain-like Superfamily:GspK insert domain-like Family:GspK insert domain-like 14 c3ci0K_ 97.5 20 PDB header:protein transport Chain: K: PDB Molecule:pseudopilin gspk; PDBTitle: the crystal structure of the gspk-gspi-gspj complex from2 enterotoxigenic escherichia coli type 2 secretion system 15 d2i5ha1 97.5 30 Fold:AF1531-like Superfamily:AF1531-like Family:AF1531-like 16 c2i5hA_ 97.5 30 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein af1531; PDBTitle: crystal structure of af1531 from archaeoglobus fulgidus,2 pfam duf655 17 c2hnhA_ 97.4 27 PDB header:transferase Chain: A: PDB Molecule:dna polymerase iii alpha subunit; PDBTitle: crystal structure of the catalytic alpha subunit of e. coli2 replicative dna polymerase iii 18 c3f2cA_ 97.3 45 PDB header:transferase/dna Chain: A: PDB Molecule:geobacillus kaustophilus dna polc; PDBTitle: dna polymerase polc from geobacillus kaustophilus complex with dna,2 dgtp and mn 19 c2bcuA_ 97.2 25 PDB header:transferase, lyase/dna Chain: A: PDB Molecule:dna polymerase lambda; PDBTitle: dna polymerase lambda in complex with a dna duplex2 containing an unpaired damp and a t:t mismatch 20 c3e0dA_ 97.2 33 PDB header:transferase/dna Chain: A: PDB Molecule:dna polymerase iii subunit alpha; PDBTitle: insights into the replisome from the crystral structure of2 the ternary complex of the eubacterial dna polymerase iii3 alpha-subunit 21 d2i1qa1 not modelled 97.2 20 Fold:SAM domain-like Superfamily:Rad51 N-terminal domain-like Family:DNA repair protein Rad51, N-terminal domain 22 d1pzna1 not modelled 97.1 17 Fold:SAM domain-like Superfamily:Rad51 N-terminal domain-like Family:DNA repair protein Rad51, N-terminal domain 23 d1dgsa1 not modelled 97.0 19 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:NAD+-dependent DNA ligase, domain 3 24 c8iczA_ not modelled 96.9 29 PDB header:transferase/dna Chain: A: PDB Molecule:protein (dna polymerase beta (e.c.2.7.7.7)); PDBTitle: dna polymerase beta (pol b) (e.c.2.7.7.7) complexed with2 seven base pairs of dna; soaked in the presence of of datp3 (1 millimolar), mncl2 (5 millimolar), and lithium sulfate4 (75 millimolar) 25 d2a1jb1 not modelled 96.9 25 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Hef domain-like 26 c1ixrA_ not modelled 96.8 30 PDB header:hydrolase Chain: A: PDB Molecule:holliday junction dna helicase ruva; PDBTitle: ruva-ruvb complex 27 c2w9mB_ not modelled 96.7 27 PDB header:dna replication Chain: B: PDB Molecule:polymerase x; PDBTitle: structure of family x dna polymerase from deinococcus2 radiodurans 28 d1cuka2 not modelled 96.7 38 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:DNA helicase RuvA subunit, middle domain 29 d1ixra1 not modelled 96.5 37 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:DNA helicase RuvA subunit, middle domain 30 d1szpa1 not modelled 96.5 21 Fold:SAM domain-like Superfamily:Rad51 N-terminal domain-like Family:DNA repair protein Rad51, N-terminal domain 31 c1kdhA_ not modelled 96.4 17 PDB header:transferase/dna Chain: A: PDB Molecule:terminal deoxynucleotidyltransferase short PDBTitle: binary complex of murine terminal deoxynucleotidyl2 transferase with a primer single stranded dna 32 d1bvsa2 not modelled 96.3 32 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:DNA helicase RuvA subunit, middle domain 33 c2ihmA_ not modelled 96.3 27 PDB header:transferase/dna Chain: A: PDB Molecule:dna polymerase mu; PDBTitle: polymerase mu in ternary complex with gapped 11mer dna2 duplex and bound incoming nucleotide 34 d2aq0a1 not modelled 96.1 18 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Hef domain-like 35 c1hjpA_ not modelled 96.1 40 PDB header:dna recombination Chain: A: PDB Molecule:ruva; PDBTitle: holliday junction binding protein ruva from e. coli 36 c1d8lA_ not modelled 95.6 41 PDB header:gene regulation Chain: A: PDB Molecule:protein (holliday junction dna helicase ruva); PDBTitle: e. coli holliday junction binding protein ruva nh2 region2 lacking domain iii 37 c2bhnD_ not modelled 95.6 26 PDB header:hydrolase Chain: D: PDB Molecule:xpf endonuclease; PDBTitle: xpf from aeropyrum pernix 38 c2h5xA_ not modelled 95.6 33 PDB header:dna binding protein Chain: A: PDB Molecule:holliday junction atp-dependent dna helicase ruva; PDBTitle: ruva from mycobacterium tuberculosis 39 c1nomA_ not modelled 95.4 35 PDB header:nucleotidyltransferase Chain: A: PDB Molecule:dna polymerase beta; PDBTitle: dna polymerase beta (pol b) (e.c.2.7.7.7), 31-kd domain; soaked in the2 presence of mncl2 (5 millimolar) 40 c2nrzB_ not modelled 95.4 18 PDB header:hydrolase Chain: B: PDB Molecule:uvrabc system protein c; PDBTitle: crystal structure of the c-terminal half of uvrc bound to2 its catalytic divalent cation 41 c1b22A_ not modelled 95.2 18 PDB header:dna binding protein Chain: A: PDB Molecule:dna repair protein rad51; PDBTitle: rad51 (n-terminal domain) 42 d1b22a_ not modelled 95.2 18 Fold:SAM domain-like Superfamily:Rad51 N-terminal domain-like Family:DNA repair protein Rad51, N-terminal domain 43 c1rrqA_ not modelled 94.7 17 PDB header:hydrolase/dna Chain: A: PDB Molecule:muty; PDBTitle: muty adenine glycosylase in complex with dna containing an2 a:oxog pair 44 d2p6ra2 not modelled 94.1 23 Fold:Sec63 N-terminal domain-like Superfamily:Sec63 N-terminal domain-like Family:Achaeal helicase C-terminal domain 45 d1kg2a_ not modelled 94.1 26 Fold:DNA-glycosylase Superfamily:DNA-glycosylase Family:Mismatch glycosylase 46 d1szpb1 not modelled 94.1 26 Fold:SAM domain-like Superfamily:Rad51 N-terminal domain-like Family:DNA repair protein Rad51, N-terminal domain 47 d1jmsa1 not modelled 94.0 16 Fold:SAM domain-like Superfamily:DNA polymerase beta, N-terminal domain-like Family:DNA polymerase beta, N-terminal domain-like 48 c1wg8B_ not modelled 93.9 36 PDB header:transferase Chain: B: PDB Molecule:predicted s-adenosylmethionine-dependent PDBTitle: crystal structure of a predicted s-adenosylmethionine-2 dependent methyltransferase tt1512 from thermus3 thermophilus hb8. 49 c2p6uA_ not modelled 93.9 23 PDB header:dna binding protein Chain: A: PDB Molecule:afuhel308 helicase; PDBTitle: apo structure of the hel308 superfamily 2 helicase 50 d1wg8a1 not modelled 93.5 36 Fold:SAM domain-like Superfamily:Putative methyltransferase TM0872, insert domain Family:Putative methyltransferase TM0872, insert domain 51 d3ci0k1 not modelled 93.1 17 Fold:SAM domain-like Superfamily:GspK insert domain-like Family:GspK insert domain-like 52 d2fmpa1 not modelled 92.9 20 Fold:SAM domain-like Superfamily:DNA polymerase beta, N-terminal domain-like Family:DNA polymerase beta, N-terminal domain-like 53 c2owoA_ not modelled 92.8 19 PDB header:ligase/dna Chain: A: PDB Molecule:dna ligase; PDBTitle: last stop on the road to repair: structure of e.coli dna ligase bound2 to nicked dna-adenylate 54 d1pu6a_ not modelled 92.8 24 Fold:DNA-glycosylase Superfamily:DNA-glycosylase Family:3-Methyladenine DNA glycosylase III (MagIII) 55 c1dgsB_ not modelled 92.7 22 PDB header:ligase Chain: B: PDB Molecule:dna ligase; PDBTitle: crystal structure of nad+-dependent dna ligase from t.2 filiformis 56 c3n5nX_ not modelled 92.5 28 PDB header:hydrolase Chain: X: PDB Molecule:a/g-specific adenine dna glycosylase; PDBTitle: crystal structure analysis of the catalytic domain and interdomain2 connector of human muty homologue 57 c1v9pB_ not modelled 92.5 21 PDB header:ligase Chain: B: PDB Molecule:dna ligase; PDBTitle: crystal structure of nad+-dependent dna ligase 58 d1rrqa1 not modelled 92.0 19 Fold:DNA-glycosylase Superfamily:DNA-glycosylase Family:Mismatch glycosylase 59 d2bcqa1 not modelled 91.6 22 Fold:SAM domain-like Superfamily:DNA polymerase beta, N-terminal domain-like Family:DNA polymerase beta, N-terminal domain-like 60 c2csdB_ not modelled 91.5 27 PDB header:isomerase Chain: B: PDB Molecule:topoisomerase v; PDBTitle: crystal structure of topoisomerase v (61 kda fragment) 61 c2kp7A_ not modelled 91.0 18 PDB header:hydrolase Chain: A: PDB Molecule:crossover junction endonuclease mus81; PDBTitle: solution nmr structure of the mus81 n-terminal hhh.2 northeast structural genomics consortium target mmt1a 62 d1mpga1 not modelled 90.7 26 Fold:DNA-glycosylase Superfamily:DNA-glycosylase Family:DNA repair glycosylase, 2 C-terminal domains 63 d2abka_ not modelled 90.2 21 Fold:DNA-glycosylase Superfamily:DNA-glycosylase Family:Endonuclease III 64 d1nzpa_ not modelled 90.2 22 Fold:SAM domain-like Superfamily:DNA polymerase beta, N-terminal domain-like Family:DNA polymerase beta, N-terminal domain-like 65 d1orna_ not modelled 89.7 25 Fold:DNA-glycosylase Superfamily:DNA-glycosylase Family:Endonuclease III 66 c1vddC_ not modelled 89.2 33 PDB header:recombination Chain: C: PDB Molecule:recombination protein recr; PDBTitle: crystal structure of recombinational repair protein recr 67 d2fmpa2 not modelled 89.0 35 Fold:SAM domain-like Superfamily:PsbU/PolX domain-like Family:DNA polymerase beta-like, second domain 68 d1dk2a_ not modelled 89.0 20 Fold:SAM domain-like Superfamily:DNA polymerase beta, N-terminal domain-like Family:DNA polymerase beta, N-terminal domain-like 69 d1vdda_ not modelled 88.9 33 Fold:Recombination protein RecR Superfamily:Recombination protein RecR Family:Recombination protein RecR 70 d1keaa_ not modelled 88.2 17 Fold:DNA-glycosylase Superfamily:DNA-glycosylase Family:Mismatch glycosylase 71 c1ut8B_ not modelled 88.0 31 PDB header:hydrolase Chain: B: PDB Molecule:exodeoxyribonuclease; PDBTitle: divalent metal ions (zinc) bound to t5 5'-exonuclease 72 d1a77a1 not modelled 87.5 33 Fold:SAM domain-like Superfamily:5' to 3' exonuclease, C-terminal subdomain Family:5' to 3' exonuclease, C-terminal subdomain 73 d2vana1 not modelled 87.4 38 Fold:SAM domain-like Superfamily:PsbU/PolX domain-like Family:DNA polymerase beta-like, second domain 74 d1rxwa1 not modelled 87.0 25 Fold:SAM domain-like Superfamily:5' to 3' exonuclease, C-terminal subdomain Family:5' to 3' exonuclease, C-terminal subdomain 75 c1mpgB_ not modelled 86.8 26 PDB header:hydrolase Chain: B: PDB Molecule:3-methyladenine dna glycosylase ii; PDBTitle: 3-methyladenine dna glycosylase ii from escherichia coli 76 c1rxvA_ not modelled 86.2 20 PDB header:hydrolase/dna Chain: A: PDB Molecule:flap structure-specific endonuclease; PDBTitle: crystal structure of a. fulgidus fen-1 bound to dna 77 c3n0uB_ not modelled 86.1 35 PDB header:hydrolase, lyase Chain: B: PDB Molecule:probable n-glycosylase/dna lyase; PDBTitle: crystal structure of tm1821, the 8-oxoguanine dna glycosylase of2 thermotoga maritima 78 d2bcqa2 not modelled 85.9 29 Fold:SAM domain-like Superfamily:PsbU/PolX domain-like Family:DNA polymerase beta-like, second domain 79 c3c1zA_ not modelled 85.2 23 PDB header:dna binding protein Chain: A: PDB Molecule:dna integrity scanning protein disa; PDBTitle: structure of the ligand-free form of a bacterial dna damage2 sensor protein 80 d1m6ya1 not modelled 85.1 35 Fold:SAM domain-like Superfamily:Putative methyltransferase TM0872, insert domain Family:Putative methyltransferase TM0872, insert domain 81 d1jmsa3 not modelled 84.8 23 Fold:SAM domain-like Superfamily:PsbU/PolX domain-like Family:DNA polymerase beta-like, second domain 82 d1ul1x1 not modelled 84.5 25 Fold:SAM domain-like Superfamily:5' to 3' exonuclease, C-terminal subdomain Family:5' to 3' exonuclease, C-terminal subdomain 83 d1cooa_ not modelled 83.9 26 Fold:SAM domain-like Superfamily:C-terminal domain of RNA polymerase alpha subunit Family:C-terminal domain of RNA polymerase alpha subunit 84 d1xo1a1 not modelled 83.8 33 Fold:SAM domain-like Superfamily:5' to 3' exonuclease, C-terminal subdomain Family:5' to 3' exonuclease, C-terminal subdomain 85 c3s6iA_ not modelled 82.5 30 PDB header:hydrolase/dna Chain: A: PDB Molecule:dna-3-methyladenine glycosylase 1; PDBTitle: schizosaccaromyces pombe 3-methyladenine dna glycosylase (mag1) in2 complex with abasic-dna. 86 d1lb2b_ not modelled 82.4 26 Fold:SAM domain-like Superfamily:C-terminal domain of RNA polymerase alpha subunit Family:C-terminal domain of RNA polymerase alpha subunit 87 d2a1ja1 not modelled 81.2 19 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Hef domain-like 88 d1z3eb1 not modelled 80.3 38 Fold:SAM domain-like Superfamily:C-terminal domain of RNA polymerase alpha subunit Family:C-terminal domain of RNA polymerase alpha subunit 89 d1doqa_ not modelled 79.6 33 Fold:SAM domain-like Superfamily:C-terminal domain of RNA polymerase alpha subunit Family:C-terminal domain of RNA polymerase alpha subunit 90 c2jhnB_ not modelled 79.6 33 PDB header:hydrolase Chain: B: PDB Molecule:3-methyladenine dna-glycosylase; PDBTitle: 3-methyladenine dna-glycosylase from archaeoglobus fulgidus 91 c2ziuA_ not modelled 79.3 35 PDB header:hydrolase Chain: A: PDB Molecule:mus81 protein; PDBTitle: crystal structure of the mus81-eme1 complex 92 d1ngna_ not modelled 79.2 16 Fold:DNA-glycosylase Superfamily:DNA-glycosylase Family:Mismatch glycosylase 93 d1d8ba_ not modelled 76.9 4 Fold:SAM domain-like Superfamily:HRDC-like Family:HRDC domain from helicases 94 d1mc8a1 not modelled 76.5 35 Fold:SAM domain-like Superfamily:5' to 3' exonuclease, C-terminal subdomain Family:5' to 3' exonuclease, C-terminal subdomain 95 c3f10A_ not modelled 76.0 38 PDB header:hydrolase, lyase Chain: A: PDB Molecule:8-oxoguanine-dna-glycosylase; PDBTitle: crystal structure of clostridium acetobutylicum 8-2 oxoguanine dna glycosylase in complex with 8-oxoguanosine 96 d1b43a1 not modelled 75.0 42 Fold:SAM domain-like Superfamily:5' to 3' exonuclease, C-terminal subdomain Family:5' to 3' exonuclease, C-terminal subdomain 97 c1a77A_ not modelled 74.8 33 PDB header:5'-3' exo/endo nuclease Chain: A: PDB Molecule:flap endonuclease-1 protein; PDBTitle: flap endonuclease-1 from methanococcus jannaschii 98 d2noha1 not modelled 74.4 29 Fold:DNA-glycosylase Superfamily:DNA-glycosylase Family:DNA repair glycosylase, 2 C-terminal domains 99 c3kntC_ not modelled 74.2 27 PDB header:hydrolase, lyase/dna Chain: C: PDB Molecule:n-glycosylase/dna lyase; PDBTitle: crystal structure of methanocaldococcus jannaschii 8-2 oxoguanine glycosylase/lyase in complex with 15mer dna3 containing 8-oxoguanine 100 d1u9la_ not modelled 73.6 25 Fold:SAM domain-like Superfamily:Rad51 N-terminal domain-like Family:NusA extra C-terminal domains 101 c2va8A_ not modelled 73.4 33 PDB header:hydrolase Chain: A: PDB Molecule:ski2-type helicase; PDBTitle: dna repair helicase hel308 102 c3fhgA_ not modelled 73.1 25 PDB header:dna repair, hydrolase, lyase Chain: A: PDB Molecule:n-glycosylase/dna lyase; PDBTitle: crystal structure of sulfolobus solfataricus 8-oxoguanine dna2 glycosylase (ssogg) 103 c1yqmA_ not modelled 72.8 30 PDB header:hydrolase/dna Chain: A: PDB Molecule:n-glycosylase/dna lyase; PDBTitle: catalytically inactive human 8-oxoguanine glycosylase2 crosslinked to 7-deazaguanine containing dna 104 c3q8lA_ not modelled 72.5 25 PDB header:hydrolase/dna Chain: A: PDB Molecule:flap endonuclease 1; PDBTitle: crystal structure of human flap endonuclease fen1 (wt) in complex with2 substrate 5'-flap dna, sm3+, and k+ 105 c1ko9A_ not modelled 72.2 33 PDB header:hydrolase Chain: A: PDB Molecule:8-oxoguanine dna glycosylase; PDBTitle: native structure of the human 8-oxoguanine dna glycosylase2 hogg1 106 c2yg8B_ not modelled 72.1 24 PDB header:hydrolase Chain: B: PDB Molecule:dna-3-methyladenine glycosidase ii, putative; PDBTitle: structure of an unusual 3-methyladenine dna glycosylase ii (2 alka) from deinococcus radiodurans 107 c1ul1Y_ not modelled 71.1 25 PDB header:hydrolase/dna binding protein Chain: Y: PDB Molecule:flap endonuclease-1; PDBTitle: crystal structure of the human fen1-pcna complex 108 c2h56C_ not modelled 69.8 21 PDB header:hydrolase Chain: C: PDB Molecule:dna-3-methyladenine glycosidase; PDBTitle: crystal structure of dna-3-methyladenine glycosidase (10174367) from2 bacillus halodurans at 2.55 a resolution 109 d2ve8a1 not modelled 69.7 23 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:FtsK C-terminal domain-like 110 c2izoA_ not modelled 65.1 21 PDB header:hydrolase Chain: A: PDB Molecule:flap structure-specific endonuclease; PDBTitle: structure of an archaeal pcna1-pcna2-fen1 complex 111 d2uubm1 not modelled 60.1 19 Fold:S13-like H2TH domain Superfamily:S13-like H2TH domain Family:Ribosomal protein S13 112 d1cmwa1 not modelled 60.0 30 Fold:SAM domain-like Superfamily:5' to 3' exonuclease, C-terminal subdomain Family:5' to 3' exonuclease, C-terminal subdomain 113 d2j5pa1 not modelled 57.9 27 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:FtsK C-terminal domain-like 114 c1b43A_ not modelled 54.0 41 PDB header:transferase Chain: A: PDB Molecule:protein (fen-1); PDBTitle: fen-1 from p. furiosus 115 d2gy9m1 not modelled 53.6 12 Fold:S13-like H2TH domain Superfamily:S13-like H2TH domain Family:Ribosomal protein S13 116 c3f52A_ not modelled 52.4 15 PDB header:transcription activator Chain: A: PDB Molecule:clp gene regulator (clgr); PDBTitle: crystal structure of the clp gene regulator clgr from c. glutamicum 117 d2e1fa1 not modelled 51.0 26 Fold:SAM domain-like Superfamily:HRDC-like Family:HRDC domain from helicases 118 d1wuda1 not modelled 50.8 25 Fold:SAM domain-like Superfamily:HRDC-like Family:HRDC domain from helicases 119 c2xznM_ not modelled 50.5 11 PDB header:ribosome Chain: M: PDB Molecule:rps18e; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2 120 c3rfaA_ not modelled 50.1 8 PDB header:oxidoreductase Chain: A: PDB Molecule:ribosomal rna large subunit methyltransferase n; PDBTitle: x-ray structure of rlmn from escherichia coli in complex with s-2 adenosylmethionine