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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c3e0dA_

Fold library idPDB HeaderMoleculeTitle
c3e0dA_PDB header: transferase/dnaChain: A: PDB Molecule: dna polymerase iii subunit alpha;PDBTitle: insights into the replisome from the crystral structure of2 the ternary complex of the eubacterial dna polymerase iii3 alpha-subunit


Added to library: Tue Mar 16 12:09:37 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence LKFAHLHQHTQFSLLNGAAKLQDLLKWVKETTPEDPALAMTDHGNLFGAVEFYKKATAMGVKPIIGYEAY
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Known secondary structure (DSSP)





SB

TTSTTT





SS
T

TTTTT
 .........80.........90.........100.........110.........120.........130.........140
Sequence VAAESRFDRKRGGYFHLTLLAKDFTGYQNLVRLASRAYLEGFYEKPRIDREILREHAQGLIALSGCLGAE
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Known secondary structure (DSSP) SS
TT






ST
BSSSB
T
TT

STTB
 .........150.........160.........170.........180.........190.........200.........210
Sequence IPQFILQDRLDLAEARLNEDLSIFGDRFFIEIQNHGLPEQKKVNQVLKEFARKYGLGMVATNNGHYVRKE
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Known secondary structure (DSSP) TT
GGG

SS
TT




BSBSSGG
 .........220.........230.........240.........250.........260.........270.........280
Sequence DARAHEVLLAIQSKTTLDDPERWRFPCDEFYVKTPEEMRAMLPEAEWGDEPFDNTVEIARMCDVDLPIGD
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Known secondary structure (DSSP) GTT

SS
SS



SSS

B


S

ST






TT
 .........290.........300.........310.........320.........330.........340.........350
Sequence KMVYRIPRFPLGRTEAQYLRELTFLGLLRRYPDRITEAFYREVLRLLDERALAEALARVEEKAWEELRKR
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Known secondary structure (DSSP) S


B









TTTS
TT



TTTTT
 .........360.........370.........380.........390.........400.........410.........420
Sequence EWTAEAILHRALYELSVIERMGFPGYFLIVQDYINWARGHGVSVGPGRGSAAGSLVAYAVGITNIDPLRF
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Known secondary structure (DSSP)


T
TTT

B
S

GGGGG
TTS

S
TTTT
 .........430.........440.........450.........460.........470.........480.........490
Sequence GLLFERFLNPERVSMPDIDTDFSDRERDRVIQYVRERYGEDKVAQIGTFGSLASKAALKDVARVYGIPHK
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Known secondary structure (DSSP) T

S
TTS





TTT
TTT



TT

 .........500.........510.........520.........530.........540.........550.........560
Sequence KAEELAKLIPVQFGKPKPLQEAFEAEPELRAEMEKDERIRQVIEVAMRLEGLNRHASVHAAGVVIAAEPL
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Known secondary structure (DSSP) TTS
BSSSSB

TTTTTSS
TTTTT
STT







SS
G
 .........570.........580.........590.........600.........610.........620.........630
Sequence TDLVPLMRDQEGRPVTQYDMGAVEALGLLKMDFLGLRTLTFLDEARRIVKESKGVELDYDRLPLDDPKTF
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Known secondary structure (DSSP) GGTS

TT

TTTB




GGG

TT
 .........640.........650.........660.........670.........680.........690.........700
Sequence ELLSRGETKGVFQLESGGMTATVRGLKPRRLEDIIALVSLYRPGPMEHIPTYIRRHHGQEPVSYAEFPHA
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Known secondary structure (DSSP) TT

TT
TT

S


S
STTGGGTT
S



TTSTTT
 .........710.........720.........730.........740.........750.........760.........770
Sequence EKYLRPILDETYGIPVYQEQIMQIASQVAGYSLGEADLLRRAMGKKRVEEMQKHRERFVRGAKERGVPEE
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Known secondary structure (DSSP) GGGTT


SS


T
TTTS

S
 .........780.........790.........800.........810.........820.........830.........840
Sequence EANRLFDMLEAFANYGFNKSHAAAYSLLSYQTAYVKAHYPVEFMAALLSVERHDSDKVAEYIRDARALGI
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Known secondary structure (DSSP) TT




TTT
TTS
 .........850.........860.........870.........880.........890.........900.........910
Sequence PVLPPDVNRSGFDFKVVGEEILFGLSAVKNVGEMAARAILEERERGGPFKSLGDFLKRLPEQVVNKRALE
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Known secondary structure (DSSP)



TTT

SS
TT

STTSSS

S
S

SS
TTTS
 .........920.........930.........940.........950.........960.........970.........980
Sequence SLVKAGALDAFGDRARLLASLEPLLRWAAETRERGRSGLVGLFAEVEEPPLVEASPLDEITMLRYEKEAL
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Known secondary structure (DSSP) TTTGGGS
TT


SSSS













 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence GIYVSGHPVLRYPGLREVASCTIEELSEFVRELPGKPKVLLSGMVEEVRFTLSDETGALEVVKEDIPLLV
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Known secondary structure (DSSP) SS

S

GGGT
S


GGGSSSSSS




TT

TT
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence LAEVERVLAQAVWTLEEVLEAPKALEVEVDHALLDEKGARLKSLLDEHPGSLPVYLRVLGPFGEALFALR
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Known secondary structure (DSSP)



TTS



S


TTT

TS
SSS
 .........1130.........1140........
Sequence EVRVGEEALGLLEAEGYRAYLVPDREVF
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Known secondary structure (DSSP)
STTTTT



STT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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