Email l.a.kelley@imperial.ac.uk Description P0A8V2 Date Wed Jan 25 15:20:19 GMT 2012 Unique Job ID d381a67183fa0e58

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3iydC_ 100.0 99 PDB header:transcription/dna Chain: C: PDB Molecule:dna-directed rna polymerase subunit beta; PDBTitle: three-dimensional em structure of an intact activator-dependent2 transcription initiation complex 2 d1smyc_ 100.0 50 Fold:beta and beta-prime subunits of DNA dependent RNA-polymerase Superfamily:beta and beta-prime subunits of DNA dependent RNA-polymerase Family:RNA-polymerase beta 3 d1ynjc1 100.0 50 Fold:beta and beta-prime subunits of DNA dependent RNA-polymerase Superfamily:beta and beta-prime subunits of DNA dependent RNA-polymerase Family:RNA-polymerase beta 4 c2pmzB_ 100.0 31 PDB header:translation, transferase Chain: B: PDB Molecule:dna-directed rna polymerase subunit b; PDBTitle: archaeal rna polymerase from sulfolobus solfataricus 5 c3h0gN_ 100.0 27 PDB header:transcription Chain: N: PDB Molecule:dna-directed rna polymerase ii subunit rpb2; PDBTitle: rna polymerase ii from schizosaccharomyces pombe 6 d1twfb_ 100.0 30 Fold:beta and beta-prime subunits of DNA dependent RNA-polymerase Superfamily:beta and beta-prime subunits of DNA dependent RNA-polymerase Family:RNA-polymerase beta 7 c3mlqD_ 100.0 54 PDB header:transferase/transcription Chain: D: PDB Molecule:dna-directed rna polymerase subunit beta; PDBTitle: crystal structure of the thermus thermophilus transcription-repair2 coupling factor rna polymerase interacting domain with the thermus3 aquaticus rna polymerase beta1 domain 8 c3mlqB_ 100.0 59 PDB header:transferase/transcription Chain: B: PDB Molecule:dna-directed rna polymerase subunit beta; PDBTitle: crystal structure of the thermus thermophilus transcription-repair2 coupling factor rna polymerase interacting domain with the thermus3 aquaticus rna polymerase beta1 domain 9 c3tbiB_ 100.0 100 PDB header:transcription Chain: B: PDB Molecule:dna-directed rna polymerase subunit beta; PDBTitle: crystal structure of t4 gp33 bound to e. coli rnap beta-flap domain 10 c3ltiA_ 100.0 92 PDB header:transferase Chain: A: PDB Molecule:dna-directed rna polymerase subunit beta; PDBTitle: crystal structure of the escherichia coli rna polymerase beta subunit2 beta2-betai4 domains 11 c3qqcA_ 99.4 23 PDB header:transcription Chain: A: PDB Molecule:dna-directed rna polymerase subunit b, dna-directed rna PDBTitle: crystal structure of archaeal spt4/5 bound to the rnap clamp domain 12 c3e7hA_ 95.6 75 PDB header:transferase Chain: A: PDB Molecule:dna-directed rna polymerase subunit beta; PDBTitle: the crystal structure of the beta subunit of the dna-2 directed rna polymerase from vibrio cholerae o1 biovar3 eltor 13 d1r46a1 50.9 20 Fold:Glycosyl hydrolase domain Superfamily:Glycosyl hydrolase domain Family:alpha-Amylases, C-terminal beta-sheet domain 14 c1gjjA_ 50.3 20 PDB header:membrane protein Chain: A: PDB Molecule:lap2; PDBTitle: n-terminal constant region of the nuclear envelope protein2 lap2 15 c2gtiA_ 41.6 14 PDB header:viral protein Chain: A: PDB Molecule:replicase polyprotein 1ab; PDBTitle: mutation of mhv coronavirus non-structural protein nsp15 (f307l) 16 d1n26a2 30.8 11 Fold:Immunoglobulin-like beta-sandwich Superfamily:Fibronectin type III Family:Fibronectin type III 17 d2eyqa5 28.1 16 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain 18 d1gm5a4 27.8 15 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain 19 d1y4oa1 26.6 53 Fold:Profilin-like Superfamily:Roadblock/LC7 domain Family:Roadblock/LC7 domain 20 d2f3na1 25.7 10 Fold:SAM domain-like Superfamily:SAM/Pointed domain Family:SAM (sterile alpha motif) domain 21 d1zq1c1 not modelled 24.5 36 Fold:GatB/YqeY motif Superfamily:GatB/YqeY motif Family:GatB/GatE C-terminal domain-like 22 c2db3D_ not modelled 24.0 38 PDB header:hydrolase/rna Chain: D: PDB Molecule:atp-dependent rna helicase vasa; PDBTitle: structural basis for rna unwinding by the dead-box protein2 drosophila vasa 23 d2g7ja1 not modelled 22.8 32 Fold:Secretion chaperone-like Superfamily:YgaC/TfoX-N like Family:YgaC-like 24 d1nbwa1 not modelled 21.4 17 Fold:The "swivelling" beta/beta/alpha domain Superfamily:Swiveling domain of dehydratase reactivase alpha subunit Family:Swiveling domain of dehydratase reactivase alpha subunit 25 d2gtia2 not modelled 21.2 10 Fold:EndoU-like Superfamily:EndoU-like Family:Nsp15 C-terminal domain-like 26 c2c2lD_ not modelled 20.5 19 PDB header:chaperone Chain: D: PDB Molecule:carboxy terminus of hsp70-interacting protein; PDBTitle: crystal structure of the chip u-box e3 ubiquitin ligase 27 d1sy7a1 not modelled 20.5 15 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Catalase, C-terminal domain 28 c2aujD_ not modelled 20.4 33 PDB header:transferase Chain: D: PDB Molecule:dna-directed rna polymerase beta' chain; PDBTitle: structure of thermus aquaticus rna polymerase beta'-subunit2 insert 29 c3mjhD_ not modelled 19.3 38 PDB header:protein transport Chain: D: PDB Molecule:early endosome antigen 1; PDBTitle: crystal structure of human rab5a in complex with the c2h2 zinc finger2 of eea1 30 c3bxzA_ not modelled 19.2 33 PDB header:transport protein Chain: A: PDB Molecule:preprotein translocase subunit seca; PDBTitle: crystal structure of the isolated dead motor domains from2 escherichia coli seca 31 c3cwiA_ not modelled 18.9 22 PDB header:biosynthetic protein Chain: A: PDB Molecule:thiamine-biosynthesis protein this; PDBTitle: crystal structure of thiamine biosynthesis protein (this)2 from geobacter metallireducens. northeast structural3 genomics consortium target gmr137 32 d1d02a_ not modelled 18.7 17 Fold:Restriction endonuclease-like Superfamily:Restriction endonuclease-like Family:Restriction endonuclease MunI 33 d1ujpa_ not modelled 18.4 31 Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:Tryptophan biosynthesis enzymes 34 c3izbX_ not modelled 18.3 63 PDB header:ribosome Chain: X: PDB Molecule:40s ribosomal protein rps27 (s27e); PDBTitle: localization of the small subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome 35 d1jqna_ not modelled 18.1 29 Fold:TIM beta/alpha-barrel Superfamily:Phosphoenolpyruvate/pyruvate domain Family:Phosphoenolpyruvate carboxylase 36 d1tf5a4 not modelled 17.7 33 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain 37 c3kdeC_ not modelled 17.6 19 PDB header:dna binding protein/dna Chain: C: PDB Molecule:transposable element p transposase; PDBTitle: crystal structure of the thap domain from d. melanogaster p-element2 transposase in complex with its natural dna binding site 38 c2nu9E_ not modelled 16.8 18 PDB header:ligase Chain: E: PDB Molecule:succinyl-coa synthetase beta chain; PDBTitle: c123at mutant of e. coli succinyl-coa synthetase2 orthorhombic crystal form 39 c3bq7A_ not modelled 16.2 16 PDB header:transferase Chain: A: PDB Molecule:diacylglycerol kinase delta; PDBTitle: sam domain of diacylglycerol kinase delta1 (e35g) 40 c2hsiB_ not modelled 16.2 25 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:putative peptidase m23; PDBTitle: crystal structure of putative peptidase m23 from2 pseudomonas aeruginosa, new york structural genomics3 consortium 41 d1cf2o2 not modelled 16.0 31 Fold:FwdE/GAPDH domain-like Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain Family:GAPDH-like 42 c3lvwA_ not modelled 16.0 18 PDB header:ligase Chain: A: PDB Molecule:glutamate--cysteine ligase; PDBTitle: glutathione-inhibited scgcl 43 c3u5cI_ not modelled 15.4 22 PDB header:ribosome Chain: I: PDB Molecule:40s ribosomal protein s8-a; PDBTitle: the structure of the eukaryotic ribosome at 3.0 a resolution 44 c2ivfC_ not modelled 15.3 38 PDB header:oxidoreductase Chain: C: PDB Molecule:ethylbenzene dehydrogenase gamma-subunit; PDBTitle: ethylbenzene dehydrogenase from aromatoleum aromaticum 45 c2bhmE_ not modelled 15.2 24 PDB header:bacterial protein Chain: E: PDB Molecule:type iv secretion system protein virb8; PDBTitle: crystal structure of virb8 from brucella suis 46 c3iz6X_ not modelled 15.2 75 PDB header:ribosome Chain: X: PDB Molecule:40s ribosomal protein s27 (s27e); PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 47 c6paxA_ not modelled 14.3 22 PDB header:gene regulation/dna Chain: A: PDB Molecule:homeobox protein pax-6; PDBTitle: crystal structure of the human pax-6 paired domain-dna2 complex reveals a general model for pax protein-dna3 interactions 48 d2bpa2_ not modelled 14.1 31 Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:ssDNA viruses Family:Microviridae-like VP 49 d2d6fc2 not modelled 13.6 46 Fold:DCoH-like Superfamily:GAD domain-like Family:GAD domain 50 c2vb0A_ not modelled 13.4 21 PDB header:hydrolase Chain: A: PDB Molecule:polyprotein 3bcd; PDBTitle: crystal structure of coxsackievirus b3 proteinase 3c 51 d2hz5a1 not modelled 13.1 59 Fold:Profilin-like Superfamily:Roadblock/LC7 domain Family:Roadblock/LC7 domain 52 c3eq5G_ not modelled 12.9 18 PDB header:signaling protein Chain: G: PDB Molecule:ski-like protein; PDBTitle: crystal structure of fragment 137 to 238 of the human ski-like protein 53 c1m1jA_ not modelled 12.9 38 PDB header:blood clotting Chain: A: PDB Molecule:fibrinogen alpha subunit; PDBTitle: crystal structure of native chicken fibrinogen with two different2 bound ligands 54 d2gpra_ not modelled 12.6 17 Fold:Barrel-sandwich hybrid Superfamily:Duplicated hybrid motif Family:Glucose permease-like 55 d1dcza_ not modelled 12.4 27 Fold:Barrel-sandwich hybrid Superfamily:Single hybrid motif Family:Biotinyl/lipoyl-carrier proteins and domains 56 d1flja_ not modelled 12.2 33 Fold:Carbonic anhydrase Superfamily:Carbonic anhydrase Family:Carbonic anhydrase 57 d2pxyd2 not modelled 12.2 56 Fold:MHC antigen-recognition domain Superfamily:MHC antigen-recognition domain Family:MHC antigen-recognition domain 58 c3dlmA_ not modelled 12.1 16 PDB header:transferase Chain: A: PDB Molecule:histone-lysine n-methyltransferase setdb1; PDBTitle: crystal structure of tudor domain of human histone-lysine n-2 methyltransferase setdb1 59 c2qm3A_ not modelled 11.8 30 PDB header:transferase Chain: A: PDB Molecule:predicted methyltransferase; PDBTitle: crystal structure of a predicted methyltransferase from pyrococcus2 furiosus 60 d1px5a1 not modelled 11.7 28 Fold:PAP/OAS1 substrate-binding domain Superfamily:PAP/OAS1 substrate-binding domain Family:2'-5'-oligoadenylate synthetase 1, OAS1, second domain 61 c2cwpA_ not modelled 11.7 15 PDB header:ligase Chain: A: PDB Molecule:metrs related protein; PDBTitle: crystal structure of metrs related protein from pyrococcus horikoshii 62 c2gu1A_ not modelled 11.4 30 PDB header:hydrolase Chain: A: PDB Molecule:zinc peptidase; PDBTitle: crystal structure of a zinc containing peptidase from2 vibrio cholerae 63 d1lk5a2 not modelled 11.4 19 Fold:Ferredoxin-like Superfamily:D-ribose-5-phosphate isomerase (RpiA), lid domain Family:D-ribose-5-phosphate isomerase (RpiA), lid domain 64 d1pfva2 not modelled 11.3 40 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Nucleotidylyl transferase Family:Class I aminoacyl-tRNA synthetases (RS), catalytic domain 65 d2pwwa1 not modelled 11.2 7 Fold:TBP-like Superfamily:YugN-like Family:YugN-like 66 d1prtc1 not modelled 11.1 14 Fold:OB-fold Superfamily:Bacterial enterotoxins Family:Bacterial AB5 toxins, B-subunits 67 c2f1mA_ not modelled 11.1 20 PDB header:transport protein Chain: A: PDB Molecule:acriflavine resistance protein a; PDBTitle: conformational flexibility in the multidrug efflux system protein acra 68 d1glaf_ not modelled 10.8 20 Fold:Barrel-sandwich hybrid Superfamily:Duplicated hybrid motif Family:Glucose permease-like 69 c2oy7A_ not modelled 10.7 13 PDB header:membrane protein Chain: A: PDB Molecule:outer surface protein a; PDBTitle: the crystal structure of ospa mutant 70 d1gjja1 not modelled 10.5 29 Fold:LEM/SAP HeH motif Superfamily:LEM domain Family:LEM domain 71 c2hxyC_ not modelled 10.3 33 PDB header:hydrolase Chain: C: PDB Molecule:probable atp-dependent rna helicase ddx48; PDBTitle: crystal structure of human apo-eif4aiii 72 c2dneA_ not modelled 10.2 13 PDB header:transferase Chain: A: PDB Molecule:dihydrolipoyllysine-residue acetyltransferase PDBTitle: solution structure of rsgi ruh-058, a lipoyl domain of2 human 2-oxoacid dehydrogenase 73 c2pjmA_ not modelled 10.2 14 PDB header:isomerase Chain: A: PDB Molecule:ribose-5-phosphate isomerase a; PDBTitle: structure of ribose 5-phosphate isomerase a from2 methanocaldococcus jannaschii 74 c3nyyA_ not modelled 10.2 32 PDB header:hydrolase Chain: A: PDB Molecule:putative glycyl-glycine endopeptidase lytm; PDBTitle: crystal structure of a putative glycyl-glycine endopeptidase lytm2 (rumgna_02482) from ruminococcus gnavus atcc 29149 at 1.60 a3 resolution 75 d1m0sa2 not modelled 10.2 19 Fold:Ferredoxin-like Superfamily:D-ribose-5-phosphate isomerase (RpiA), lid domain Family:D-ribose-5-phosphate isomerase (RpiA), lid domain 76 d1pk1c1 not modelled 10.2 3 Fold:SAM domain-like Superfamily:SAM/Pointed domain Family:SAM (sterile alpha motif) domain 77 d1f46a_ not modelled 10.1 57 Fold:TBP-like Superfamily:Cell-division protein ZipA, C-terminal domain Family:Cell-division protein ZipA, C-terminal domain 78 c3ghgD_ not modelled 10.0 29 PDB header:blood clotting Chain: D: PDB Molecule:fibrinogen alpha chain; PDBTitle: crystal structure of human fibrinogen 79 c1pk1A_ not modelled 9.9 5 PDB header:transcription repression Chain: A: PDB Molecule:polyhomeotic-proximal chromatin protein; PDBTitle: hetero sam domain structure of ph and scm. 80 c1pd7B_ not modelled 9.9 60 PDB header:transcription Chain: B: PDB Molecule:mad1; PDBTitle: extended sid of mad1 bound to the pah2 domain of msin3b 81 d1aola_ not modelled 9.8 21 Fold:ENV polyprotein, receptor-binding domain Superfamily:ENV polyprotein, receptor-binding domain Family:ENV polyprotein, receptor-binding domain 82 c2jgnB_ not modelled 9.7 24 PDB header:hydrolase Chain: B: PDB Molecule:atp-dependent rna helicase ddx3x; PDBTitle: ddx3 helicase domain 83 c3gekA_ not modelled 9.7 21 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative thioesterase yhda; PDBTitle: crystal structure of putative thioesterase yhda from lactococcus2 lactis. northeast structural genomics consortium target kr113 84 d1prtb1 not modelled 9.7 14 Fold:OB-fold Superfamily:Bacterial enterotoxins Family:Bacterial AB5 toxins, B-subunits 85 d1luga_ not modelled 9.6 33 Fold:Carbonic anhydrase Superfamily:Carbonic anhydrase Family:Carbonic anhydrase 86 d2c4ka1 not modelled 9.5 13 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosylpyrophosphate synthetase-like 87 c3kizA_ not modelled 9.5 27 PDB header:ligase Chain: A: PDB Molecule:phosphoribosylformylglycinamidine cyclo-ligase; PDBTitle: crystal structure of putative phosphoribosylformylglycinamidine cyclo-2 ligase (yp_676759.1) from cytophaga hutchinsonii atcc 33406 at 1.50 a3 resolution 88 c1a1vA_ not modelled 9.5 26 PDB header:hydrolase/dna Chain: A: PDB Molecule:protein (ns3 protein); PDBTitle: hepatitis c virus ns3 helicase domain complexed with single2 stranded sdna 89 d1m5ha1 not modelled 9.5 42 Fold:Ferredoxin-like Superfamily:Formylmethanofuran:tetrahydromethanopterin formyltransferase Family:Formylmethanofuran:tetrahydromethanopterin formyltransferase 90 d2d0oa1 not modelled 9.4 12 Fold:The "swivelling" beta/beta/alpha domain Superfamily:Swiveling domain of dehydratase reactivase alpha subunit Family:Swiveling domain of dehydratase reactivase alpha subunit 91 d1u9ya1 not modelled 9.4 20 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosylpyrophosphate synthetase-like 92 d1ftra1 not modelled 9.4 54 Fold:Ferredoxin-like Superfamily:Formylmethanofuran:tetrahydromethanopterin formyltransferase Family:Formylmethanofuran:tetrahydromethanopterin formyltransferase 93 d1gpra_ not modelled 9.3 25 Fold:Barrel-sandwich hybrid Superfamily:Duplicated hybrid motif Family:Glucose permease-like 94 d1vf7a_ not modelled 9.3 27 Fold:HlyD-like secretion proteins Superfamily:HlyD-like secretion proteins Family:HlyD-like secretion proteins 95 c2xzm6_ not modelled 9.2 63 PDB header:ribosome Chain: 6: PDB Molecule:rps27e; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1 96 d1m5sa1 not modelled 9.2 42 Fold:Ferredoxin-like Superfamily:Formylmethanofuran:tetrahydromethanopterin formyltransferase Family:Formylmethanofuran:tetrahydromethanopterin formyltransferase 97 d1qxfa_ not modelled 9.2 33 Fold:Rubredoxin-like Superfamily:Zn-binding ribosomal proteins Family:Ribosomal protein S27e 98 c2kkpA_ not modelled 9.2 36 PDB header:dna binding protein Chain: A: PDB Molecule:phage integrase; PDBTitle: solution nmr structure of the phage integrase sam-like2 domain from moth 1796 from moorella thermoacetica.3 northeast structural genomics consortium target mtr39k4 (residues 64-171). 99 c2fyuE_ not modelled 9.1 43 PDB header:oxidoreductase Chain: E: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur subunit, PDBTitle: crystal structure of bovine heart mitochondrial bc1 with jg1442 inhibitor