Email l.a.kelley@imperial.ac.uk Description P0A809 Date Thu Jan 5 11:06:34 GMT 2012 Unique Job ID be9e6bd720e657ea

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1hjpA_ 100.0 99 PDB header:dna recombination Chain: A: PDB Molecule:ruva; PDBTitle: holliday junction binding protein ruva from e. coli 2 c2h5xA_ 100.0 38 PDB header:dna binding protein Chain: A: PDB Molecule:holliday junction atp-dependent dna helicase ruva; PDBTitle: ruva from mycobacterium tuberculosis 3 c1d8lA_ 100.0 100 PDB header:gene regulation Chain: A: PDB Molecule:protein (holliday junction dna helicase ruva); PDBTitle: e. coli holliday junction binding protein ruva nh2 region2 lacking domain iii 4 c1ixrA_ 100.0 34 PDB header:hydrolase Chain: A: PDB Molecule:holliday junction dna helicase ruva; PDBTitle: ruva-ruvb complex 5 d1cuka2 99.9 100 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:DNA helicase RuvA subunit, middle domain 6 d1bvsa2 99.9 35 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:DNA helicase RuvA subunit, middle domain 7 d1ixra1 99.9 31 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:DNA helicase RuvA subunit, middle domain 8 d1cuka3 99.8 100 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:DNA helicase RuvA subunit, N-terminal domain 9 d1bvsa3 99.8 38 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:DNA helicase RuvA subunit, N-terminal domain 10 d1ixra2 99.8 37 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:DNA helicase RuvA subunit, N-terminal domain 11 d1cuka1 98.9 98 Fold:RuvA C-terminal domain-like Superfamily:DNA helicase RuvA subunit, C-terminal domain Family:DNA helicase RuvA subunit, C-terminal domain 12 d1x2ia1 98.4 25 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Hef domain-like 13 d1kfta_ 98.4 31 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Excinuclease UvrC C-terminal domain 14 c1kftA_ 98.4 31 PDB header:dna binding protein Chain: A: PDB Molecule:excinuclease abc subunit c; PDBTitle: solution structure of the c-terminal domain of uvrc from e-2 coli 15 d2bgwa1 98.3 21 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Hef domain-like 16 d1dgsa1 98.2 19 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:NAD+-dependent DNA ligase, domain 3 17 d2i1qa1 98.1 30 Fold:SAM domain-like Superfamily:Rad51 N-terminal domain-like Family:DNA repair protein Rad51, N-terminal domain 18 d1pzna1 98.1 25 Fold:SAM domain-like Superfamily:Rad51 N-terminal domain-like Family:DNA repair protein Rad51, N-terminal domain 19 d2a1jb1 98.0 17 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Hef domain-like 20 d1szpa1 97.8 21 Fold:SAM domain-like Superfamily:Rad51 N-terminal domain-like Family:DNA repair protein Rad51, N-terminal domain 21 d1ixsa_ not modelled 97.5 44 Fold:RuvA C-terminal domain-like Superfamily:DNA helicase RuvA subunit, C-terminal domain Family:DNA helicase RuvA subunit, C-terminal domain 22 c2bhnD_ not modelled 97.4 25 PDB header:hydrolase Chain: D: PDB Molecule:xpf endonuclease; PDBTitle: xpf from aeropyrum pernix 23 c1dgsB_ not modelled 97.4 29 PDB header:ligase Chain: B: PDB Molecule:dna ligase; PDBTitle: crystal structure of nad+-dependent dna ligase from t.2 filiformis 24 c2nrzB_ not modelled 97.4 14 PDB header:hydrolase Chain: B: PDB Molecule:uvrabc system protein c; PDBTitle: crystal structure of the c-terminal half of uvrc bound to2 its catalytic divalent cation 25 c1b22A_ not modelled 97.4 18 PDB header:dna binding protein Chain: A: PDB Molecule:dna repair protein rad51; PDBTitle: rad51 (n-terminal domain) 26 d1b22a_ not modelled 97.4 18 Fold:SAM domain-like Superfamily:Rad51 N-terminal domain-like Family:DNA repair protein Rad51, N-terminal domain 27 c2csdB_ not modelled 97.3 25 PDB header:isomerase Chain: B: PDB Molecule:topoisomerase v; PDBTitle: crystal structure of topoisomerase v (61 kda fragment) 28 c8iczA_ not modelled 97.3 27 PDB header:transferase/dna Chain: A: PDB Molecule:protein (dna polymerase beta (e.c.2.7.7.7)); PDBTitle: dna polymerase beta (pol b) (e.c.2.7.7.7) complexed with2 seven base pairs of dna; soaked in the presence of of datp3 (1 millimolar), mncl2 (5 millimolar), and lithium sulfate4 (75 millimolar) 29 c2w9mB_ not modelled 97.3 25 PDB header:dna replication Chain: B: PDB Molecule:polymerase x; PDBTitle: structure of family x dna polymerase from deinococcus2 radiodurans 30 c2owoA_ not modelled 97.2 19 PDB header:ligase/dna Chain: A: PDB Molecule:dna ligase; PDBTitle: last stop on the road to repair: structure of e.coli dna ligase bound2 to nicked dna-adenylate 31 d1szpb1 not modelled 97.1 23 Fold:SAM domain-like Superfamily:Rad51 N-terminal domain-like Family:DNA repair protein Rad51, N-terminal domain 32 c1kdhA_ not modelled 97.1 23 PDB header:transferase/dna Chain: A: PDB Molecule:terminal deoxynucleotidyltransferase short PDBTitle: binary complex of murine terminal deoxynucleotidyl2 transferase with a primer single stranded dna 33 c2ihmA_ not modelled 97.1 21 PDB header:transferase/dna Chain: A: PDB Molecule:dna polymerase mu; PDBTitle: polymerase mu in ternary complex with gapped 11mer dna2 duplex and bound incoming nucleotide 34 c2ziuA_ not modelled 96.8 21 PDB header:hydrolase Chain: A: PDB Molecule:mus81 protein; PDBTitle: crystal structure of the mus81-eme1 complex 35 c1vddC_ not modelled 96.8 45 PDB header:recombination Chain: C: PDB Molecule:recombination protein recr; PDBTitle: crystal structure of recombinational repair protein recr 36 d1vdda_ not modelled 96.8 45 Fold:Recombination protein RecR Superfamily:Recombination protein RecR Family:Recombination protein RecR 37 c1v9pB_ not modelled 96.7 19 PDB header:ligase Chain: B: PDB Molecule:dna ligase; PDBTitle: crystal structure of nad+-dependent dna ligase 38 d2aq0a1 not modelled 96.6 15 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Hef domain-like 39 c3f10A_ not modelled 96.4 24 PDB header:hydrolase, lyase Chain: A: PDB Molecule:8-oxoguanine-dna-glycosylase; PDBTitle: crystal structure of clostridium acetobutylicum 8-2 oxoguanine dna glycosylase in complex with 8-oxoguanosine 40 c2bcuA_ not modelled 96.3 22 PDB header:transferase, lyase/dna Chain: A: PDB Molecule:dna polymerase lambda; PDBTitle: dna polymerase lambda in complex with a dna duplex2 containing an unpaired damp and a t:t mismatch 41 d2axtu1 not modelled 96.0 26 Fold:SAM domain-like Superfamily:PsbU/PolX domain-like Family:PsbU-like 42 c1s5lu_ not modelled 95.8 26 PDB header:photosynthesis Chain: U: PDB Molecule:photosystem ii 12 kda extrinsic protein; PDBTitle: architecture of the photosynthetic oxygen evolving center 43 c1ko9A_ not modelled 95.7 28 PDB header:hydrolase Chain: A: PDB Molecule:8-oxoguanine dna glycosylase; PDBTitle: native structure of the human 8-oxoguanine dna glycosylase2 hogg1 44 d2duya1 not modelled 95.7 43 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:ComEA-like 45 d1rxwa1 not modelled 95.7 17 Fold:SAM domain-like Superfamily:5' to 3' exonuclease, C-terminal subdomain Family:5' to 3' exonuclease, C-terminal subdomain 46 d1a77a1 not modelled 95.6 19 Fold:SAM domain-like Superfamily:5' to 3' exonuclease, C-terminal subdomain Family:5' to 3' exonuclease, C-terminal subdomain 47 c2jhnB_ not modelled 95.5 27 PDB header:hydrolase Chain: B: PDB Molecule:3-methyladenine dna-glycosylase; PDBTitle: 3-methyladenine dna-glycosylase from archaeoglobus fulgidus 48 c1yqmA_ not modelled 95.5 24 PDB header:hydrolase/dna Chain: A: PDB Molecule:n-glycosylase/dna lyase; PDBTitle: catalytically inactive human 8-oxoguanine glycosylase2 crosslinked to 7-deazaguanine containing dna 49 d1b43a1 not modelled 95.3 13 Fold:SAM domain-like Superfamily:5' to 3' exonuclease, C-terminal subdomain Family:5' to 3' exonuclease, C-terminal subdomain 50 d2edua1 not modelled 95.2 25 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:ComEA-like 51 d3bzka1 not modelled 95.0 26 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Tex HhH-containing domain-like 52 d1mc8a1 not modelled 95.0 16 Fold:SAM domain-like Superfamily:5' to 3' exonuclease, C-terminal subdomain Family:5' to 3' exonuclease, C-terminal subdomain 53 c2yg8B_ not modelled 94.7 26 PDB header:hydrolase Chain: B: PDB Molecule:dna-3-methyladenine glycosidase ii, putative; PDBTitle: structure of an unusual 3-methyladenine dna glycosylase ii (2 alka) from deinococcus radiodurans 54 c3fhgA_ not modelled 94.6 25 PDB header:dna repair, hydrolase, lyase Chain: A: PDB Molecule:n-glycosylase/dna lyase; PDBTitle: crystal structure of sulfolobus solfataricus 8-oxoguanine dna2 glycosylase (ssogg) 55 c2zixA_ not modelled 94.5 19 PDB header:hydrolase Chain: A: PDB Molecule:crossover junction endonuclease mus81; PDBTitle: crystal structure of the mus81-eme1 complex 56 d1mpga1 not modelled 94.3 28 Fold:DNA-glycosylase Superfamily:DNA-glycosylase Family:DNA repair glycosylase, 2 C-terminal domains 57 d2noha1 not modelled 93.9 27 Fold:DNA-glycosylase Superfamily:DNA-glycosylase Family:DNA repair glycosylase, 2 C-terminal domains 58 c1rxvA_ not modelled 93.8 16 PDB header:hydrolase/dna Chain: A: PDB Molecule:flap structure-specific endonuclease; PDBTitle: crystal structure of a. fulgidus fen-1 bound to dna 59 d1xo1a1 not modelled 93.6 15 Fold:SAM domain-like Superfamily:5' to 3' exonuclease, C-terminal subdomain Family:5' to 3' exonuclease, C-terminal subdomain 60 c1nomA_ not modelled 93.5 22 PDB header:nucleotidyltransferase Chain: A: PDB Molecule:dna polymerase beta; PDBTitle: dna polymerase beta (pol b) (e.c.2.7.7.7), 31-kd domain; soaked in the2 presence of mncl2 (5 millimolar) 61 c3c1zA_ not modelled 93.5 16 PDB header:dna binding protein Chain: A: PDB Molecule:dna integrity scanning protein disa; PDBTitle: structure of the ligand-free form of a bacterial dna damage2 sensor protein 62 d1ngna_ not modelled 93.4 19 Fold:DNA-glycosylase Superfamily:DNA-glycosylase Family:Mismatch glycosylase 63 d2abka_ not modelled 93.2 31 Fold:DNA-glycosylase Superfamily:DNA-glycosylase Family:Endonuclease III 64 d2p6ra2 not modelled 93.2 17 Fold:Sec63 N-terminal domain-like Superfamily:Sec63 N-terminal domain-like Family:Achaeal helicase C-terminal domain 65 d1orna_ not modelled 93.0 29 Fold:DNA-glycosylase Superfamily:DNA-glycosylase Family:Endonuclease III 66 c1b43A_ not modelled 93.0 14 PDB header:transferase Chain: A: PDB Molecule:protein (fen-1); PDBTitle: fen-1 from p. furiosus 67 c3s6iA_ not modelled 92.8 37 PDB header:hydrolase/dna Chain: A: PDB Molecule:dna-3-methyladenine glycosylase 1; PDBTitle: schizosaccaromyces pombe 3-methyladenine dna glycosylase (mag1) in2 complex with abasic-dna. 68 c2izoA_ not modelled 92.7 11 PDB header:hydrolase Chain: A: PDB Molecule:flap structure-specific endonuclease; PDBTitle: structure of an archaeal pcna1-pcna2-fen1 complex 69 d1pu6a_ not modelled 92.6 28 Fold:DNA-glycosylase Superfamily:DNA-glycosylase Family:3-Methyladenine DNA glycosylase III (MagIII) 70 d1rrqa1 not modelled 92.4 18 Fold:DNA-glycosylase Superfamily:DNA-glycosylase Family:Mismatch glycosylase 71 d1keaa_ not modelled 92.3 25 Fold:DNA-glycosylase Superfamily:DNA-glycosylase Family:Mismatch glycosylase 72 d1ul1x1 not modelled 92.2 28 Fold:SAM domain-like Superfamily:5' to 3' exonuclease, C-terminal subdomain Family:5' to 3' exonuclease, C-terminal subdomain 73 d1bvsa1 not modelled 91.9 24 Fold:RuvA C-terminal domain-like Superfamily:DNA helicase RuvA subunit, C-terminal domain Family:DNA helicase RuvA subunit, C-terminal domain 74 d1kg2a_ not modelled 91.8 32 Fold:DNA-glycosylase Superfamily:DNA-glycosylase Family:Mismatch glycosylase 75 c1ut8B_ not modelled 91.7 11 PDB header:hydrolase Chain: B: PDB Molecule:exodeoxyribonuclease; PDBTitle: divalent metal ions (zinc) bound to t5 5'-exonuclease 76 c1mpgB_ not modelled 91.5 33 PDB header:hydrolase Chain: B: PDB Molecule:3-methyladenine dna glycosylase ii; PDBTitle: 3-methyladenine dna glycosylase ii from escherichia coli 77 c2p6uA_ not modelled 91.2 28 PDB header:dna binding protein Chain: A: PDB Molecule:afuhel308 helicase; PDBTitle: apo structure of the hel308 superfamily 2 helicase 78 c2oceA_ not modelled 91.0 27 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein pa5201; PDBTitle: crystal structure of tex family protein pa5201 from2 pseudomonas aeruginosa 79 d2csba3 not modelled 90.9 27 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Topoisomerase V repeat domain 80 c2va8A_ not modelled 90.9 24 PDB header:hydrolase Chain: A: PDB Molecule:ski2-type helicase; PDBTitle: dna repair helicase hel308 81 c3oryA_ not modelled 90.5 18 PDB header:hydrolase Chain: A: PDB Molecule:flap endonuclease 1; PDBTitle: crystal structure of flap endonuclease 1 from hyperthermophilic2 archaeon desulfurococcus amylolyticus 82 c1rrqA_ not modelled 90.2 18 PDB header:hydrolase/dna Chain: A: PDB Molecule:muty; PDBTitle: muty adenine glycosylase in complex with dna containing an2 a:oxog pair 83 d1veka_ not modelled 90.1 21 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 84 c3n0uB_ not modelled 89.5 25 PDB header:hydrolase, lyase Chain: B: PDB Molecule:probable n-glycosylase/dna lyase; PDBTitle: crystal structure of tm1821, the 8-oxoguanine dna glycosylase of2 thermotoga maritima 85 d2bcqa1 not modelled 89.0 35 Fold:SAM domain-like Superfamily:DNA polymerase beta, N-terminal domain-like Family:DNA polymerase beta, N-terminal domain-like 86 c1ul1Y_ not modelled 88.7 28 PDB header:hydrolase/dna binding protein Chain: Y: PDB Molecule:flap endonuclease-1; PDBTitle: crystal structure of the human fen1-pcna complex 87 d2fmpa1 not modelled 88.5 42 Fold:SAM domain-like Superfamily:DNA polymerase beta, N-terminal domain-like Family:DNA polymerase beta, N-terminal domain-like 88 c3psiA_ not modelled 88.4 19 PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor spt6; PDBTitle: crystal structure of the spt6 core domain from saccharomyces2 cerevisiae, form spt6(239-1451) 89 d1cmwa1 not modelled 88.3 28 Fold:SAM domain-like Superfamily:5' to 3' exonuclease, C-terminal subdomain Family:5' to 3' exonuclease, C-terminal subdomain 90 c1a77A_ not modelled 88.2 22 PDB header:5'-3' exo/endo nuclease Chain: A: PDB Molecule:flap endonuclease-1 protein; PDBTitle: flap endonuclease-1 from methanococcus jannaschii 91 c3kntC_ not modelled 87.6 21 PDB header:hydrolase, lyase/dna Chain: C: PDB Molecule:n-glycosylase/dna lyase; PDBTitle: crystal structure of methanocaldococcus jannaschii 8-2 oxoguanine glycosylase/lyase in complex with 15mer dna3 containing 8-oxoguanine 92 d2i5ha1 not modelled 87.6 39 Fold:AF1531-like Superfamily:AF1531-like Family:AF1531-like 93 c2i5hA_ not modelled 87.6 39 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein af1531; PDBTitle: crystal structure of af1531 from archaeoglobus fulgidus,2 pfam duf655 94 d1nzpa_ not modelled 87.4 35 Fold:SAM domain-like Superfamily:DNA polymerase beta, N-terminal domain-like Family:DNA polymerase beta, N-terminal domain-like 95 d1wiva_ not modelled 87.2 21 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 96 c3q8lA_ not modelled 87.2 20 PDB header:hydrolase/dna Chain: A: PDB Molecule:flap endonuclease 1; PDBTitle: crystal structure of human flap endonuclease fen1 (wt) in complex with2 substrate 5'-flap dna, sm3+, and k+ 97 c3n5nX_ not modelled 87.0 32 PDB header:hydrolase Chain: X: PDB Molecule:a/g-specific adenine dna glycosylase; PDBTitle: crystal structure analysis of the catalytic domain and interdomain2 connector of human muty homologue 98 c3psfA_ not modelled 86.2 22 PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor spt6; PDBTitle: crystal structure of the spt6 core domain from saccharomyces2 cerevisiae, form spt6(236-1259) 99 d1ifya_ not modelled 85.4 9 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 100 c2zixB_ not modelled 85.3 26 PDB header:hydrolase Chain: B: PDB Molecule:crossover junction endonuclease eme1; PDBTitle: crystal structure of the mus81-eme1 complex 101 c2dagA_ not modelled 85.2 12 PDB header:hydrolase Chain: A: PDB Molecule:ubiquitin carboxyl-terminal hydrolase 5; PDBTitle: solution structure of the first uba domain in the human2 ubiquitin specific protease 5 (isopeptidase 5) 102 c3qeaZ_ not modelled 85.0 18 PDB header:hydrolase/dna Chain: Z: PDB Molecule:exonuclease 1; PDBTitle: crystal structure of human exonuclease 1 exo1 (wt) in complex with dna2 (complex ii) 103 d1jmsa1 not modelled 84.0 16 Fold:SAM domain-like Superfamily:DNA polymerase beta, N-terminal domain-like Family:DNA polymerase beta, N-terminal domain-like 104 d1oqya1 not modelled 83.6 7 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 105 d1cooa_ not modelled 83.2 17 Fold:SAM domain-like Superfamily:C-terminal domain of RNA polymerase alpha subunit Family:C-terminal domain of RNA polymerase alpha subunit 106 c2dakA_ not modelled 82.9 15 PDB header:hydrolase Chain: A: PDB Molecule:ubiquitin carboxyl-terminal hydrolase 5; PDBTitle: solution structure of the second uba domain in the human2 ubiquitin specific protease 5 (isopeptidase 5) 107 d2crna1 not modelled 82.8 13 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 108 d1whca_ not modelled 82.6 16 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 109 d2g3qa1 not modelled 82.6 26 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 110 c2kp7A_ not modelled 81.6 15 PDB header:hydrolase Chain: A: PDB Molecule:crossover junction endonuclease mus81; PDBTitle: solution nmr structure of the mus81 n-terminal hhh.2 northeast structural genomics consortium target mmt1a 111 c2crnA_ not modelled 81.5 12 PDB header:immune system Chain: A: PDB Molecule:ubash3a protein; PDBTitle: solution structure of the uba domain of human ubash3a2 protein 112 d1i94m_ not modelled 81.2 35 Fold:S13-like H2TH domain Superfamily:S13-like H2TH domain Family:Ribosomal protein S13 113 d2fmpa2 not modelled 81.2 26 Fold:SAM domain-like Superfamily:PsbU/PolX domain-like Family:DNA polymerase beta-like, second domain 114 c2cpwA_ not modelled 80.8 11 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:cbl-interacting protein sts-1 variant; PDBTitle: solution structure of rsgi ruh-031, a uba domain from human2 cdna 115 c2h56C_ not modelled 80.2 29 PDB header:hydrolase Chain: C: PDB Molecule:dna-3-methyladenine glycosidase; PDBTitle: crystal structure of dna-3-methyladenine glycosidase (10174367) from2 bacillus halodurans at 2.55 a resolution 116 d2vana1 not modelled 80.1 20 Fold:SAM domain-like Superfamily:PsbU/PolX domain-like Family:DNA polymerase beta-like, second domain 117 d1dk2a_ not modelled 80.1 42 Fold:SAM domain-like Superfamily:DNA polymerase beta, N-terminal domain-like Family:DNA polymerase beta, N-terminal domain-like 118 d1lb2b_ not modelled 79.7 24 Fold:SAM domain-like Superfamily:C-terminal domain of RNA polymerase alpha subunit Family:C-terminal domain of RNA polymerase alpha subunit 119 d1vega_ not modelled 79.2 12 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 120 d2bcqa2 not modelled 79.1 16 Fold:SAM domain-like Superfamily:PsbU/PolX domain-like Family:DNA polymerase beta-like, second domain