Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	G	N	N	L	M	Q	T	D	L	S	V	W	G	M	Y	Q	H	A	D	I	V	V	K	C	V	M	I	G	L	I	L	A	S	V	V	T	W	A	I	F	F	S	K	S	V	E	F	F	N	Q	K	R	R	L	K	R	E	Q	Q
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?																																													?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		L	L	A	E	A	R	S	L	N	Q	A	N	D	I	A	A	D	F	G	S	K	S	L	S	L	H	L	L	N	E	A	Q	N	E	L	E	L	S	E	G	S	D	D	N	E	G	I	K	E	R	T	S	F	R	L	E	R	R	V	A
Secondary structure
SS confidence
Disorder									?										?	?	?	?		?												?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		A	V	G	R	Q	M	G	R	G	N	G	Y	L	A	T	I	G	A	I	S	P	F	V	G	L	F	G	T	V	W	G	I	M	N	S	F	I	G	I	A	Q	T	Q	T	T	N	L	A	V	V	A	P	G	I	A	E	A	L	L	A
Secondary structure
SS confidence
Disorder									?																																	?	?	?	?	?	?						?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		T	A	I	G	L	V	A	A	I	P	A	V	V	I	Y	N	V	F	A	R	Q	I	G	G	F	K	A	M	L	G	D	V	A	A	Q	V	L	L	L	Q	S	R	D	L	D	L	E	A	S	A	A	A	H	P	V	R	V	A	Q	K
Secondary structure
SS confidence
Disorder																																												?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.
Sequence		L	R	A	G
Secondary structure
SS confidence
Disorder		?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2bbj chain B Region: 45 - 152 Aligned: 106 Modelled: 108 Confidence: 72.1% Identity: 12% PDB header:metal transport/membrane protein Chain: B: PDB Molecule:divalent cation transport-related protein; PDBTitle: crystal structure of the cora mg2+ transporter Phyre2 PDB 1cii chain A Region: 116 - 208 Aligned: 93 Modelled: 93 Confidence: 63.0% Identity: 15% PDB header:transmembrane protein Chain: A: PDB Molecule:colicin ia; PDBTitle: colicin ia Phyre2 PDB 1t33 chain A domain 1 Region: 194 - 234 Aligned: 41 Modelled: 41 Confidence: 40.6% Identity: 12% Fold: DNA/RNA-binding 3-helical bundle Superfamily: Homeodomain-like Family: Tetracyclin repressor-like, N-terminal domain Phyre2 PDB 1vi0 chain A domain 1 Region: 194 - 228 Aligned: 35 Modelled: 35 Confidence: 38.5% Identity: 17% Fold: DNA/RNA-binding 3-helical bundle Superfamily: Homeodomain-like Family: Tetracyclin repressor-like, N-terminal domain Phyre2 PDB 2fbq chain A domain 1 Region: 194 - 230 Aligned: 37 Modelled: 37 Confidence: 38.4% Identity: 11% Fold: DNA/RNA-binding 3-helical bundle Superfamily: Homeodomain-like Family: Tetracyclin repressor-like, N-terminal domain Phyre2 PDB 2ap7 chain A Region: 139 - 151 Aligned: 13 Modelled: 13 Confidence: 33.9% Identity: 46% PDB header:antibiotic Chain: A: PDB Molecule:bombinin h2; PDBTitle: solution structure of bombinin h2 in dpc micelles Phyre2 PDB 2fbq chain A Region: 194 - 241 Aligned: 48 Modelled: 48 Confidence: 33.5% Identity: 10% PDB header:transcription Chain: A: PDB Molecule:probable transcriptional regulator; PDBTitle: the crystal structure of transcriptional regulator pa3006 Phyre2 PDB 1o5h chain A Region: 148 - 225 Aligned: 75 Modelled: 76 Confidence: 33.4% Identity: 9% Fold: Methenyltetrahydrofolate cyclohydrolase-like Superfamily: Methenyltetrahydrofolate cyclohydrolase-like Family: Methenyltetrahydrofolate cyclohydrolase-like Phyre2 PDB 2ap8 chain A Region: 139 - 151 Aligned: 13 Modelled: 13 Confidence: 29.4% Identity: 46% PDB header:antibiotic Chain: A: PDB Molecule:bombinin h4; PDBTitle: solution structure of bombinin h4 in dpc micelles Phyre2 PDB 1ji6 chain A domain 3 Region: 125 - 237 Aligned: 105 Modelled: 113 Confidence: 25.2% Identity: 14% Fold: Toxins' membrane translocation domains Superfamily: delta-Endotoxin (insectocide), N-terminal domain Family: delta-Endotoxin (insectocide), N-terminal domain Phyre2 PDB 2o7t chain A domain 1 Region: 194 - 226 Aligned: 33 Modelled: 33 Confidence: 25.1% Identity: 18% Fold: DNA/RNA-binding 3-helical bundle Superfamily: Homeodomain-like Family: Tetracyclin repressor-like, N-terminal domain Phyre2 PDB 1tt9 chain B Region: 163 - 225 Aligned: 60 Modelled: 63 Confidence: 23.3% Identity: 12% PDB header:transferase, lyase Chain: B: PDB Molecule:formimidoyltransferase-cyclodeaminase PDBTitle: structure of the bifunctional and golgi associated2 formiminotransferase cyclodeaminase octamer Phyre2 PDB 1jt6 chain A domain 1 Region: 194 - 227 Aligned: 34 Modelled: 34 Confidence: 22.3% Identity: 12% Fold: DNA/RNA-binding 3-helical bundle Superfamily: Homeodomain-like Family: Tetracyclin repressor-like, N-terminal domain Phyre2 PDB 1dlc chain A domain 3 Region: 124 - 237 Aligned: 105 Modelled: 105 Confidence: 22.2% Identity: 10% Fold: Toxins' membrane translocation domains Superfamily: delta-Endotoxin (insectocide), N-terminal domain Family: delta-Endotoxin (insectocide), N-terminal domain Phyre2 PDB 1zk8 chain A domain 1 Region: 194 - 225 Aligned: 32 Modelled: 32 Confidence: 20.1% Identity: 9% Fold: DNA/RNA-binding 3-helical bundle Superfamily: Homeodomain-like Family: Tetracyclin repressor-like, N-terminal domain Phyre2 PDB 2gen chain A domain 1 Region: 194 - 227 Aligned: 34 Modelled: 34 Confidence: 17.5% Identity: 12% Fold: DNA/RNA-binding 3-helical bundle Superfamily: Homeodomain-like Family: Tetracyclin repressor-like, N-terminal domain Phyre2 PDB 2knc chain B Region: 22 - 66 Aligned: 43 Modelled: 45 Confidence: 17.3% Identity: 19% PDB header:cell adhesion Chain: B: PDB Molecule:integrin beta-3; PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex Phyre2 PDB 2gfn chain A domain 1 Region: 194 - 228 Aligned: 35 Modelled: 35 Confidence: 17.1% Identity: 17% Fold: DNA/RNA-binding 3-helical bundle Superfamily: Homeodomain-like Family: Tetracyclin repressor-like, N-terminal domain Phyre2 PDB 2axt chain J domain 1 Region: 178 - 195 Aligned: 18 Modelled: 18 Confidence: 16.9% Identity: 28% Fold: Single transmembrane helix Superfamily: Photosystem II reaction center protein J, PsbJ Family: PsbJ-like Phyre2 PDB 3f1b chain A Region: 194 - 229 Aligned: 36 Modelled: 36 Confidence: 16.1% Identity: 14% PDB header:transcription regulator Chain: A: PDB Molecule:tetr-like transcriptional regulator; PDBTitle: the crystal structure of a tetr-like transcriptional regulator from2 rhodococcus sp. rha1. Phyre2 1 c2bbjB_ 2 c1ciiA_ 3 d1t33a1 4 d1vi0a1 5 d2fbqa1 6 c2ap7A_ 7 c2fbqA_ 8 d1o5ha_ 9 c2ap8A_ 10 d1ji6a3 11 d2o7ta1 12 c1tt9B_ 13 d1jt6a1 14 d1dlca3 15 d1zk8a1 16 d2gena1 17 c2kncB_ 18 d2gfna1 19 d2axtj1 20 c3f1bA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2bbjB_ 72.1 12 PDB header:metal transport/membrane protein Chain: B: PDB Molecule:divalent cation transport-related protein; PDBTitle: crystal structure of the cora mg2+ transporter 2 c1ciiA_ 63.0 15 PDB header:transmembrane protein Chain: A: PDB Molecule:colicin ia; PDBTitle: colicin ia 3 d1t33a1 40.6 12 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain 4 d1vi0a1 38.5 17 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain 5 d2fbqa1 38.4 11 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain 6 c2ap7A_ 33.9 46 PDB header:antibiotic Chain: A: PDB Molecule:bombinin h2; PDBTitle: solution structure of bombinin h2 in dpc micelles 7 c2fbqA_ 33.5 10 PDB header:transcription Chain: A: PDB Molecule:probable transcriptional regulator; PDBTitle: the crystal structure of transcriptional regulator pa3006 8 d1o5ha_ 33.4 9 Fold:Methenyltetrahydrofolate cyclohydrolase-like Superfamily:Methenyltetrahydrofolate cyclohydrolase-like Family:Methenyltetrahydrofolate cyclohydrolase-like 9 c2ap8A_ 29.4 46 PDB header:antibiotic Chain: A: PDB Molecule:bombinin h4; PDBTitle: solution structure of bombinin h4 in dpc micelles 10 d1ji6a3 25.2 14 Fold:Toxins' membrane translocation domains Superfamily:delta-Endotoxin (insectocide), N-terminal domain Family:delta-Endotoxin (insectocide), N-terminal domain 11 d2o7ta1 25.1 18 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain 12 c1tt9B_ 23.3 12 PDB header:transferase, lyase Chain: B: PDB Molecule:formimidoyltransferase-cyclodeaminase PDBTitle: structure of the bifunctional and golgi associated2 formiminotransferase cyclodeaminase octamer 13 d1jt6a1 22.3 12 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain 14 d1dlca3 22.2 10 Fold:Toxins' membrane translocation domains Superfamily:delta-Endotoxin (insectocide), N-terminal domain Family:delta-Endotoxin (insectocide), N-terminal domain 15 d1zk8a1 20.1 9 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain 16 d2gena1 17.5 12 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain 17 c2kncB_ 17.3 19 PDB header:cell adhesion Chain: B: PDB Molecule:integrin beta-3; PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex 18 d2gfna1 17.1 17 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain 19 d2axtj1 16.9 28 Fold:Single transmembrane helix Superfamily:Photosystem II reaction center protein J, PsbJ Family:PsbJ-like 20 c3f1bA_ 16.1 14 PDB header:transcription regulator Chain: A: PDB Molecule:tetr-like transcriptional regulator; PDBTitle: the crystal structure of a tetr-like transcriptional regulator from2 rhodococcus sp. rha1. 21 d2fd5a1 not modelled 14.9 10 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain 22 c2kncA_ not modelled 14.7 22 PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha-iib; PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex 23 d2np5a1 not modelled 14.0 18 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain 24 d2id6a1 not modelled 13.9 11 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain 25 d1rkta1 not modelled 13.7 13 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain 26 d3c07a1 not modelled 12.7 21 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain 27 c3gziA_ not modelled 12.7 16 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator, tetr family; PDBTitle: crystal structure of a transcriptional regulator of the tetr family2 (shew_3567) from shewanella loihica pv-4 at 2.05 a resolution 28 c3ppbB_ not modelled 12.6 6 PDB header:transcription regulator Chain: B: PDB Molecule:putative tetr family transcription regulator; PDBTitle: crystal structure of a putative tetr family transcription regulator2 (shew_3104) from shewanella sp. pv-4 at 2.10 a resolution 29 d1sgma1 not modelled 12.2 15 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain 30 c2wgbB_ not modelled 12.2 19 PDB header:transcription Chain: B: PDB Molecule:tetr family transcriptional repressor lfrr; PDBTitle: crystal structure of the tetr-like transcriptional2 regulator lfrr from mycobacterium smegmatis 31 d2i10a1 not modelled 11.9 15 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain 32 c3mnlA_ not modelled 11.6 17 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulatory protein (probably tetr-family); PDBTitle: the crystal structure of kstr (rv3574) from mycobacterium tuberculosis2 h37rv 33 c1t33B_ not modelled 11.3 12 PDB header:transcription Chain: B: PDB Molecule:putative transcriptional repressor (tetr/acrr family); PDBTitle: structural genomics, the crystal structure of a putative2 transcriptional repressor (tetr/acrr family) from salmonella3 typhimurim lt2 34 c2rekA_ not modelled 11.2 16 PDB header:transcription Chain: A: PDB Molecule:putative tetr-family transcriptional regulator; PDBTitle: crystal structure of tetr-family transcriptional regulator 35 c3jsjC_ not modelled 11.1 19 PDB header:transcription Chain: C: PDB Molecule:putative tetr-family transcriptional regulator; PDBTitle: crystal structure of a putative tetr-transcriptional regulator2 (sav143) from streptomyces avermitilis ma-4680 at 2.10 a resolution 36 c1u9nA_ not modelled 11.0 15 PDB header:dna binding protein Chain: A: PDB Molecule:transcriptional repressor ethr; PDBTitle: crystal structure of the transcriptional regulator ethr in2 a ligand bound conformation opens therapeutic perspectives3 against tuberculosis and leprosy 37 c2g7sA_ not modelled 11.0 6 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator, tetr family; PDBTitle: the crystal structure of transcriptional regulator, tetr family, from2 agrobacterium tumefaciens 38 c2hyjA_ not modelled 10.8 8 PDB header:transcription Chain: A: PDB Molecule:putative tetr-family transcriptional regulator; PDBTitle: the crystal structure of a tetr-family transcriptional regulator from2 streptomyces coelicolor 39 c1ji6A_ not modelled 10.8 14 PDB header:toxin Chain: A: PDB Molecule:pesticidial crystal protein cry3bb; PDBTitle: crystal structure of the insecticidal bacterial del2 endotoxin cry3bb1 bacillus thuringiensis 40 c3aqsD_ not modelled 10.4 19 PDB header:transcription regulator Chain: D: PDB Molecule:bacterial regulatory proteins, tetr family; PDBTitle: crystal structure of rolr (ncgl1110) without ligand 41 c3iuvA_ not modelled 10.2 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized tetr family protein; PDBTitle: the structure of a member of tetr family (sco1917) from2 streptomyces coelicolor a3 42 c3c07B_ not modelled 10.1 19 PDB header:transcription regulator Chain: B: PDB Molecule:putative tetr-family transcriptional regulator; PDBTitle: crystal structure of a tetr family transcriptional regulator from2 streptomyces coelicolor a3(2) 43 c1vi0B_ not modelled 10.1 17 PDB header:transcription Chain: B: PDB Molecule:transcriptional regulator; PDBTitle: crystal structure of a transcriptional regulator 44 c2genA_ not modelled 9.6 14 PDB header:transcription Chain: A: PDB Molecule:probable transcriptional regulator; PDBTitle: structural genomics, the crystal structure of a probable2 transcriptional regulator from pseudomonas aeruginosa pao1 45 c3dpjB_ not modelled 9.5 11 PDB header:dna binding protein Chain: B: PDB Molecule:transcription regulator, tetr family; PDBTitle: the crystal structure of a tetr transcription regulator2 from silicibacter pomeroyi dss 46 c3knwB_ not modelled 9.5 14 PDB header:transcription regulator Chain: B: PDB Molecule:putative transcriptional regulator (tetr/acrr family); PDBTitle: crystal structure of a putative transcriptional regulator (tetr/acrr2 family member) from putative transcriptional regulator (tetr/acrr3 family) 47 c1ui6B_ not modelled 9.5 19 PDB header:antibiotic Chain: B: PDB Molecule:a-factor receptor homolog; PDBTitle: crystal structure of gamma-butyrolactone receptor (arpa-like protein) 48 c3eupA_ not modelled 9.3 14 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, tetr family; PDBTitle: the crystal structure of the transcriptional regulator, tetr family2 from cytophaga hutchinsonii 49 c2qibA_ not modelled 9.1 12 PDB header:transcription Chain: A: PDB Molecule:tetr-family transcriptional regulator; PDBTitle: crystal structure of tetr-family transcriptional regulator from2 streptomyces coelicolor 50 c2oerA_ not modelled 8.8 14 PDB header:transcription Chain: A: PDB Molecule:probable transcriptional regulator; PDBTitle: probable transcriptional regulator from pseudomonas2 aeruginosa 51 c3qbmA_ not modelled 8.7 19 PDB header:transcription regulator Chain: A: PDB Molecule:tetr transcriptional regulator; PDBTitle: crystal structure of a tetr transcriptional regulator (caur_2221) from2 chloroflexus aurantiacus j-10-fl at 1.80 a resolution 52 c2q24A_ not modelled 8.7 14 PDB header:transcription Chain: A: PDB Molecule:putative tetr family transcriptional regulator; PDBTitle: crystal structure of tetr transcriptional regulator sco0520 from2 streptomyces coelicolor 53 c2rasB_ not modelled 8.6 8 PDB header:transcription Chain: B: PDB Molecule:transcriptional regulator, tetr family; PDBTitle: crystal structure of a putative tetr/acrr family transcriptional2 regulator (saro_0558) from novosphingobium aromaticivorans dsm at3 1.80 a resolution 54 c2gfnA_ not modelled 8.5 16 PDB header:transcription Chain: A: PDB Molecule:hth-type transcriptional regulator pksa related protein; PDBTitle: crystal structure of hth-type transcriptional regulator pksa related2 protein from rhodococcus sp. rha1 55 c2k1aA_ not modelled 8.3 23 PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha-iib; PDBTitle: bicelle-embedded integrin alpha(iib) transmembrane segment 56 d1q8da_ not modelled 8.3 63 Fold:GDNF receptor-like Superfamily:GDNF receptor-like Family:GDNF receptor-like 57 c2hytA_ not modelled 8.2 17 PDB header:transcription Chain: A: PDB Molecule:tetr-family transcriptional regulator; PDBTitle: crystal structure of a tetr-family transcriptional regulator (eca1819)2 from pectobacterium atrosepticum at 1.64 a resolution 58 d1t56a1 not modelled 8.0 15 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain 59 c2eh3A_ not modelled 7.6 9 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator; PDBTitle: crystal structure of aq_1058, a transcriptional regulator (terr/acrr2 family) from aquifex aeolicus vf5 60 c1rktA_ not modelled 7.5 11 PDB header:transcription Chain: A: PDB Molecule:protein yfir; PDBTitle: crystal structure of yfir, a putative transcriptional regulator from2 bacillus subtilis 61 c2pz9A_ not modelled 7.5 9 PDB header:transcription Chain: A: PDB Molecule:putative regulatory protein; PDBTitle: crystal structure of putative transcriptional regulator sco4942 from2 streptomyces coelicolor 62 c2iaiA_ not modelled 7.4 6 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative transcriptional regulator sco3833; PDBTitle: crystal structure of sco3833, a member of the tetr transcriptional2 regulator family from streptomyces coelicolor a3 63 c3lwjA_ not modelled 7.4 28 PDB header:transcription regulator Chain: A: PDB Molecule:putative tetr-family transcriptional regulator; PDBTitle: crystal structure of putative tetr-family transcriptional regulator2 (yp_752756.1) from syntrophomonas wolfei str. goettingen at 2.07 a3 resolution 64 c2ibdB_ not modelled 7.3 8 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:possible transcriptional regulator; PDBTitle: crystal structure of probable transcriptional regulatory protein2 rha5900 65 c3f0cA_ not modelled 7.3 14 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator; PDBTitle: crystal structure of transcriptional regulator from cytophaga2 hutchinsonii atcc 33406 66 c2o7tA_ not modelled 7.3 16 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator; PDBTitle: crystal structure of a tetr family transcriptional regulator2 (ncgl1578, cgl1640) from corynebacterium glutamicum at 2.10 a3 resolution 67 c2dg8D_ not modelled 7.3 11 PDB header:gene regulation Chain: D: PDB Molecule:putative tetr-family transcriptional regulatory protein; PDBTitle: crystal structure of the putative trasncriptional regulator sco75182 from streptomyces coelicolor a3(2) 68 c3himA_ not modelled 7.1 11 PDB header:transcription regulator Chain: A: PDB Molecule:probable transcriptional regulator; PDBTitle: the crystal structure of a bacterial regulatory protein in the tetr2 family from rhodococcus rha1 to 2.2a 69 c3dcfB_ not modelled 7.0 17 PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulator of the tetr/acrr PDBTitle: crystal structure of transcriptional regulator of the2 tetr/acrr family (yp_290855.1) from thermobifida fusca yx-3 er1 at 2.50 a resolution 70 d2g3ba1 not modelled 7.0 21 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain 71 c3e7qB_ not modelled 7.0 14 PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulator; PDBTitle: the crystal structure of the putative transcriptional regulator from2 pseudomonas aeruginosa pao1 72 c1bttA_ not modelled 7.0 45 PDB header:transmembrane protein Chain: A: PDB Molecule:band 3 anion transport protein; PDBTitle: the solution structures of the first and second2 transmembrane-spanning segments of band 3 73 c1btsA_ not modelled 7.0 45 PDB header:transmembrane protein Chain: A: PDB Molecule:band 3 anion transport protein; PDBTitle: the solution structures of the first and second2 transmembrane-spanning segments of band 3 74 c3anpD_ not modelled 6.9 11 PDB header:transcription Chain: D: PDB Molecule:transcriptional repressor, tetr family; PDBTitle: crystal structure of thermus thermophilus fadr, a tetr familly2 transcriptional repressor, in complex with lauroyl-coa. 75 c2v5eA_ not modelled 6.8 42 PDB header:receptor/glycoprotein complex Chain: A: PDB Molecule:gdnf family receptor alpha-1; PDBTitle: the structure of the gdnf\:coreceptor complex\: insights2 into ret signalling and heparin binding. 76 c3fubA_ not modelled 6.8 42 PDB header:hormone Chain: A: PDB Molecule:gdnf family receptor alpha-1; PDBTitle: crystal structure of gdnf-gfralpha1 complex 77 d2oi8a1 not modelled 6.7 9 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain 78 c3nxcA_ not modelled 6.6 14 PDB header:dna binding protein Chain: A: PDB Molecule:hth-type protein slma; PDBTitle: molecular mechanism by which the escherichia coli nucleoid occlusion2 factor, slma, keeps cytokinesis in check 79 c1jumB_ not modelled 6.5 11 PDB header:transcription Chain: B: PDB Molecule:hypothetical transcriptional regulator in qaca PDBTitle: crystal structure of the multidrug binding transcriptional2 repressor qacr bound to the natural drug berberine 80 c3ccyA_ not modelled 6.5 14 PDB header:transcription regulator Chain: A: PDB Molecule:putative tetr-family transcriptional regulator; PDBTitle: crystal structure of a tetr-family transcriptional regulator from2 bordetella parapertussis 12822 81 d1l9bm_ not modelled 6.5 9 Fold:Bacterial photosystem II reaction centre, L and M subunits Superfamily:Bacterial photosystem II reaction centre, L and M subunits Family:Bacterial photosystem II reaction centre, L and M subunits 82 c3rh2A_ not modelled 6.5 14 PDB header:dna binding protein Chain: A: PDB Molecule:hypothetical tetr-like transcriptional regulator; PDBTitle: crystal structure of a hypothetical tetr-like transcriptional2 regulator (sama_0099) from shewanella amazonensis sb2b at 2.42 a3 resolution 83 c3nnrA_ not modelled 6.4 11 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator, tetr family; PDBTitle: crystal structure of a tetr-family transcriptional regulator2 (maqu_3571) from marinobacter aquaeolei vt8 at 2.49 a resolution 84 c3geuC_ not modelled 6.4 5 PDB header:cell adhesion Chain: C: PDB Molecule:intercellular adhesion protein r; PDBTitle: crystal structure of icar from staphylococcus aureus, a member of the2 tetracycline repressor protein family 85 c3lsjA_ not modelled 6.3 14 PDB header:transcription Chain: A: PDB Molecule:dest; PDBTitle: crystal structure of dest in complex with palmitoyl-coa 86 c2l4gA_ not modelled 6.3 45 PDB header:viral protein Chain: A: PDB Molecule:haemagglutinin; PDBTitle: influenza haemagglutinin fusion peptide mutant g13a 87 c2np5A_ not modelled 6.2 14 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator; PDBTitle: crystal structure of a transcriptional regulator (rha1_ro04179) from2 rhodococcus sp. rha1. 88 d2d6ya1 not modelled 6.2 16 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain 89 c1zkgB_ not modelled 6.1 10 PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulator, tetr family; PDBTitle: crystal structure of transcriptional regulator, tetr family (tm1030)2 from thermotoga maritima at 2.30 a resolution 90 c3on4D_ not modelled 6.1 11 PDB header:transcription Chain: D: PDB Molecule:transcriptional regulator, tetr family; PDBTitle: crystal structure of tetr transcriptional regulator from legionella2 pneumophila 91 d1pb6a1 not modelled 6.0 14 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain 92 c3crjC_ not modelled 6.0 8 PDB header:transcription regulator Chain: C: PDB Molecule:transcription regulator; PDBTitle: crystal structure of a tetr transcription regulator from haloarcula2 marismortui atcc 43049 93 c2zcmB_ not modelled 5.9 6 PDB header:transcription Chain: B: PDB Molecule:biofilm operon icaabcd hth-type negative transcriptional PDBTitle: crystal structure of icar, a repressor of the tetr family 94 c3mvpA_ not modelled 5.9 21 PDB header:transcription regulator Chain: A: PDB Molecule:tetr/acrr transcriptional regulator; PDBTitle: the crystal structure of a tetr/acrr transcriptional regulator from2 streptococcus mutans to 1.85a 95 c2dciA_ not modelled 5.8 45 PDB header:viral protein Chain: A: PDB Molecule:hemagglutinin; PDBTitle: nmr structure of influenza ha fusion peptide mutant w14a in2 dpc in ph5 96 c2qwtA_ not modelled 5.8 16 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator, tetr family; PDBTitle: crystal structure of the tetr transcription regulatory2 protein from mycobacterium vanbaalenii 97 c2qtqB_ not modelled 5.7 16 PDB header:transcription Chain: B: PDB Molecule:transcriptional regulator, tetr family; PDBTitle: crystal structure of a predicted dna-binding transcriptional regulator2 (saro_1072) from novosphingobium aromaticivorans dsm at 1.85 a3 resolution 98 d1v7ba1 not modelled 5.5 10 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain 99 c2i10A_ not modelled 5.5 14 PDB header:transcription Chain: A: PDB Molecule:putative tetr transcriptional regulator; PDBTitle: putative tetr transcriptional regulator from rhodococcus sp. rha1

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0