PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: d1l9bm_

Fold library id	Fold	Superfamily	Family
d1l9bm_	Bacterial photosystem II reaction centre, L and M subunits	Bacterial photosystem II reaction centre, L and M subunits	Bacterial photosystem II reaction centre, L and M subunits

Links to external resources
Added to library: Tue Mar 16 14:19:27 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence F S T L L G W F G N A Q L G P I Y L G S L G V L S L F S G L M W F F T I G I W F W Y Q A G W N P A V F L R D L F F F S L E P P A P E Y G L S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T
T T
T T T
S G G G
B
G G G T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence F A A P L K E G G L W L I A S F F M F V A V W S W W G R T Y L R A Q A L G M G K H T A W A F L S A I W L W M V L G F I R P I L M G S W S E A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
S
G G G T T T
S T T
G G G S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence V P Y G I F S H L D W T N N F S L V H G N L F Y N P F H G L S I A F L Y G S A L L F A M H G A T I L A V S R F G G E R E L E Q I A D R G T A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
B S T T T T
G G G
T G G G T T T
S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . .

Sequence A E R A A L F W R W T M G F N A T M E G I H R W A I W M A V L V T L T G G I G I L L S G T V V D N W Y V W G Q N H

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
T T T T B T T T B S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	F	S	T	L	L	G	W	F	G	N	A	Q	L	G	P	I	Y	L	G	S	L	G	V	L	S	L	F	S	G	L	M	W	F	F	T	I	G	I	W	F	W	Y	Q	A	G	W	N	P	A	V	F	L	R	D	L	F	F	F	S	L	E	P	P	A	P	E	Y	G	L	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										T				T	T																													T	T	T								S	G	G	G			B					G	G	G	T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	F	A	A	P	L	K	E	G	G	L	W	L	I	A	S	F	F	M	F	V	A	V	W	S	W	W	G	R	T	Y	L	R	A	Q	A	L	G	M	G	K	H	T	A	W	A	F	L	S	A	I	W	L	W	M	V	L	G	F	I	R	P	I	L	M	G	S	W	S	E	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S		S		G	G	G	T																												T	T			S																		T							T		G	G	G	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	V	P	Y	G	I	F	S	H	L	D	W	T	N	N	F	S	L	V	H	G	N	L	F	Y	N	P	F	H	G	L	S	I	A	F	L	Y	G	S	A	L	L	F	A	M	H	G	A	T	I	L	A	V	S	R	F	G	G	E	R	E	L	E	Q	I	A	D	R	G	T	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			B	S	T	T													T	T		G	G	G																												T	G	G	G	T	T	T								S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
Sequence	A	E	R	A	A	L	F	W	R	W	T	M	G	F	N	A	T	M	E	G	I	H	R	W	A	I	W	M	A	V	L	V	T	L	T	G	G	I	G	I	L	L	S	G	T	V	V	D	N	W	Y	V	W	G	Q	N	H
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)													S					T	T	T																						T	B	T	T	T	B	S