Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	N	L	E	K	I	N	E	L	T	A	Q	D	M	A	G	V	N	A	A	I	L	E	Q	L	N	S	D	V	Q	L	I	N	Q	L	G	Y	Y	I	V	S	G	G	G	K	R	I	R	P	M	I	A	V	L	A	A	R	A	V	G
Secondary structure
SS confidence
Disorder		?	?																											?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		Y	E	G	N	A	H	V	T	I	A	A	L	I	E	F	I	H	T	A	T	L	L	H	D	D	V	V	D	E	S	D	M	R	R	G	K	A	T	A	N	A	A	F	G	N	A	A	S	V	L	V	G	D	F	I	Y	T	R	A	F
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		Q	M	M	T	S	L	G	S	L	K	V	L	E	V	M	S	E	A	V	N	V	I	A	E	G	E	V	L	Q	L	M	N	V	N	D	P	D	I	T	E	E	N	Y	M	R	V	I	Y	S	K	T	A	R	L	F	E	A	A	A	Q
Secondary structure
SS confidence
Disorder																																		?		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		C	S	G	I	L	A	G	C	T	P	E	E	E	K	G	L	Q	D	Y	G	R	Y	L	G	T	A	F	Q	L	I	D	D	L	L	D	Y	N	A	D	G	E	Q	L	G	K	N	V	G	D	D	L	N	E	G	K	P	T	L	P	L
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		L	H	A	M	H	H	G	T	P	E	Q	A	Q	M	I	R	T	A	I	E	Q	G	N	G	R	H	L	L	E	P	V	L	E	A	M	N	A	C	G	S	L	E	W	T	R	Q	R	A	E	E	E	A	D	K	A	I	A	A	L	Q
Secondary structure
SS confidence
Disorder																							?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
Sequence		V	L	P	D	T	P	W	R	E	A	L	I	G	L	A	H	I	A	V	Q	R	D	R
Secondary structure
SS confidence
Disorder																					?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3oyr chain B Region: 2 - 322 Aligned: 321 Modelled: 321 Confidence: 100.0% Identity: 45% PDB header:transferase Chain: B: PDB Molecule:trans-isoprenyl diphosphate synthase; PDBTitle: crystal structure of polyprenyl synthase from caulobacter crescentus2 cb15 complexed with calcium and isoprenyl diphosphate Phyre2 PDB 3mzv chain B Region: 3 - 323 Aligned: 321 Modelled: 321 Confidence: 100.0% Identity: 46% PDB header:transferase Chain: B: PDB Molecule:decaprenyl diphosphate synthase; PDBTitle: crystal structure of a decaprenyl diphosphate synthase from2 rhodobacter capsulatus Phyre2 PDB 1wy0 chain A Region: 3 - 322 Aligned: 319 Modelled: 320 Confidence: 100.0% Identity: 31% PDB header:transferase Chain: A: PDB Molecule:geranylgeranyl pyrophosphate synthetase; PDBTitle: crystal structure of geranylgeranyl pyrophosphate synthetase from2 pyrococcus horikoshii ot3 Phyre2 PDB 3aqb chain D Region: 1 - 322 Aligned: 322 Modelled: 322 Confidence: 100.0% Identity: 26% PDB header:transferase Chain: D: PDB Molecule:component b of hexaprenyl diphosphate synthase; PDBTitle: m. luteus b-p 26 heterodimeric hexaprenyl diphosphate synthase in2 complex with magnesium Phyre2 PDB 3nf2 chain A Region: 5 - 319 Aligned: 315 Modelled: 315 Confidence: 100.0% Identity: 25% PDB header:transferase Chain: A: PDB Molecule:putative polyprenyl synthetase; PDBTitle: crystal structure of polyprenyl synthetase from streptomyces2 coelicolor a3(2) Phyre2 PDB 1wmw chain A Region: 11 - 321 Aligned: 309 Modelled: 311 Confidence: 100.0% Identity: 27% PDB header:transferase Chain: A: PDB Molecule:geranylgeranyl diphosphate synthetase; PDBTitle: crystal structure of geranulgeranyl diphosphate synthase from thermus2 thermophilus Phyre2 PDB 1fps chain A Region: 3 - 323 Aligned: 318 Modelled: 321 Confidence: 100.0% Identity: 22% Fold: Terpenoid synthases Superfamily: Terpenoid synthases Family: Isoprenyl diphosphate synthases Phyre2 PDB 3n3d chain B Region: 10 - 321 Aligned: 300 Modelled: 312 Confidence: 100.0% Identity: 27% PDB header:transferase Chain: B: PDB Molecule:geranylgeranyl pyrophosphate synthase; PDBTitle: crystal structure of geranylgeranyl pyrophosphate synthase from2 lactobacillus brevis atcc 367 Phyre2 PDB 3aq0 chain G Region: 7 - 323 Aligned: 300 Modelled: 317 Confidence: 100.0% Identity: 32% PDB header:transferase Chain: G: PDB Molecule:geranyl diphosphate synthase; PDBTitle: ligand-bound form of arabidopsis medium/long-chain length prenyl2 pyrophosphate synthase (surface polar residue mutant) Phyre2 PDB 3cp6 chain A Region: 11 - 318 Aligned: 305 Modelled: 307 Confidence: 100.0% Identity: 21% PDB header:transferase Chain: A: PDB Molecule:farnesyl pyrophosphate synthetase; PDBTitle: crystal structure of human farnesyl diphosphate synthase (t201a2 mutant) complexed with mg and biphosphonate inhibitor Phyre2 PDB 3lmd chain A Region: 4 - 321 Aligned: 297 Modelled: 318 Confidence: 100.0% Identity: 31% PDB header:transferase Chain: A: PDB Molecule:geranylgeranyl pyrophosphate synthase; PDBTitle: crystal structure of geranylgeranyl pyrophosphate synthase2 from corynebacterium glutamicum atcc 13032 Phyre2 PDB 2f94 chain F Region: 2 - 318 Aligned: 314 Modelled: 317 Confidence: 100.0% Identity: 20% PDB header:transferase Chain: F: PDB Molecule:farnesyl diphosphate synthase; PDBTitle: crystal structure of human fpps in complex with ibandronate Phyre2 PDB 2q80 chain A domain 1 Region: 30 - 323 Aligned: 280 Modelled: 294 Confidence: 100.0% Identity: 22% Fold: Terpenoid synthases Superfamily: Terpenoid synthases Family: Isoprenyl diphosphate synthases Phyre2 PDB 3oyr chain A Region: 2 - 321 Aligned: 289 Modelled: 292 Confidence: 100.0% Identity: 45% PDB header:transferase Chain: A: PDB Molecule:trans-isoprenyl diphosphate synthase; PDBTitle: crystal structure of polyprenyl synthase from caulobacter crescentus2 cb15 complexed with calcium and isoprenyl diphosphate Phyre2 PDB 2ogd chain B Region: 1 - 323 Aligned: 320 Modelled: 323 Confidence: 100.0% Identity: 17% PDB header:transferase Chain: B: PDB Molecule:farnesyl pyrophosphate synthase; PDBTitle: t. brucei farnesyl diphosphate synthase complexed with bisphosphonate2 bph-527 Phyre2 PDB 3rmg chain B Region: 12 - 321 Aligned: 294 Modelled: 310 Confidence: 100.0% Identity: 32% PDB header:transferase Chain: B: PDB Molecule:octaprenyl-diphosphate synthase; PDBTitle: crystal structure of geranylgeranyl pyrophosphate synthase from2 bacteroides thetaiotaomicron Phyre2 PDB 1yhl chain A Region: 2 - 323 Aligned: 319 Modelled: 322 Confidence: 100.0% Identity: 18% PDB header:transferase Chain: A: PDB Molecule:farnesyl pyrophosphate synthase; PDBTitle: structure of the complex of trypanosoma cruzi farnesyl diphosphate2 synthase with risedronate, dmapp and mg+2 Phyre2 PDB 3ez3 chain A Region: 8 - 320 Aligned: 311 Modelled: 313 Confidence: 100.0% Identity: 23% PDB header:lyase Chain: A: PDB Molecule:farnesyl pyrophosphate synthase, putative; PDBTitle: crystal structure of plasmodium vivax geranylgeranylpyrophosphate2 synthase pvx_092040 with zoledronate and ipp bound Phyre2 PDB 1rqj chain A Region: 1 - 323 Aligned: 285 Modelled: 286 Confidence: 100.0% Identity: 31% Fold: Terpenoid synthases Superfamily: Terpenoid synthases Family: Isoprenyl diphosphate synthases Phyre2 PDB 2e8x chain B Region: 16 - 316 Aligned: 294 Modelled: 297 Confidence: 100.0% Identity: 22% PDB header:transferase Chain: B: PDB Molecule:geranylgeranyl pyrophosphate synthetase; PDBTitle: s. cerevisiae geranylgeranyl pyrophosphate synthase in2 complex with magnesium and gpp Phyre2 1 c3oyrB_ 2 c3mzvB_ 3 c1wy0A_ 4 c3aqbD_ 5 c3nf2A_ 6 c1wmwA_ 7 d1fpsa_ 8 c3n3dB_ 9 c3aq0G_ 10 c3cp6A_ 11 c3lmdA_ 12 c2f94F_ 13 d2q80a1 14 c3oyrA_ 15 c2ogdB_ 16 c3rmgB_ 17 c1yhlA_ 18 c3ez3A_ 19 d1rqja_ 20 c2e8xB_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3oyrB_ 100.0 45 PDB header:transferase Chain: B: PDB Molecule:trans-isoprenyl diphosphate synthase; PDBTitle: crystal structure of polyprenyl synthase from caulobacter crescentus2 cb15 complexed with calcium and isoprenyl diphosphate 2 c3mzvB_ 100.0 46 PDB header:transferase Chain: B: PDB Molecule:decaprenyl diphosphate synthase; PDBTitle: crystal structure of a decaprenyl diphosphate synthase from2 rhodobacter capsulatus 3 c1wy0A_ 100.0 31 PDB header:transferase Chain: A: PDB Molecule:geranylgeranyl pyrophosphate synthetase; PDBTitle: crystal structure of geranylgeranyl pyrophosphate synthetase from2 pyrococcus horikoshii ot3 4 c3aqbD_ 100.0 26 PDB header:transferase Chain: D: PDB Molecule:component b of hexaprenyl diphosphate synthase; PDBTitle: m. luteus b-p 26 heterodimeric hexaprenyl diphosphate synthase in2 complex with magnesium 5 c3nf2A_ 100.0 25 PDB header:transferase Chain: A: PDB Molecule:putative polyprenyl synthetase; PDBTitle: crystal structure of polyprenyl synthetase from streptomyces2 coelicolor a3(2) 6 c1wmwA_ 100.0 27 PDB header:transferase Chain: A: PDB Molecule:geranylgeranyl diphosphate synthetase; PDBTitle: crystal structure of geranulgeranyl diphosphate synthase from thermus2 thermophilus 7 d1fpsa_ 100.0 22 Fold:Terpenoid synthases Superfamily:Terpenoid synthases Family:Isoprenyl diphosphate synthases 8 c3n3dB_ 100.0 27 PDB header:transferase Chain: B: PDB Molecule:geranylgeranyl pyrophosphate synthase; PDBTitle: crystal structure of geranylgeranyl pyrophosphate synthase from2 lactobacillus brevis atcc 367 9 c3aq0G_ 100.0 32 PDB header:transferase Chain: G: PDB Molecule:geranyl diphosphate synthase; PDBTitle: ligand-bound form of arabidopsis medium/long-chain length prenyl2 pyrophosphate synthase (surface polar residue mutant) 10 c3cp6A_ 100.0 21 PDB header:transferase Chain: A: PDB Molecule:farnesyl pyrophosphate synthetase; PDBTitle: crystal structure of human farnesyl diphosphate synthase (t201a2 mutant) complexed with mg and biphosphonate inhibitor 11 c3lmdA_ 100.0 31 PDB header:transferase Chain: A: PDB Molecule:geranylgeranyl pyrophosphate synthase; PDBTitle: crystal structure of geranylgeranyl pyrophosphate synthase2 from corynebacterium glutamicum atcc 13032 12 c2f94F_ 100.0 20 PDB header:transferase Chain: F: PDB Molecule:farnesyl diphosphate synthase; PDBTitle: crystal structure of human fpps in complex with ibandronate 13 d2q80a1 100.0 22 Fold:Terpenoid synthases Superfamily:Terpenoid synthases Family:Isoprenyl diphosphate synthases 14 c3oyrA_ 100.0 45 PDB header:transferase Chain: A: PDB Molecule:trans-isoprenyl diphosphate synthase; PDBTitle: crystal structure of polyprenyl synthase from caulobacter crescentus2 cb15 complexed with calcium and isoprenyl diphosphate 15 c2ogdB_ 100.0 17 PDB header:transferase Chain: B: PDB Molecule:farnesyl pyrophosphate synthase; PDBTitle: t. brucei farnesyl diphosphate synthase complexed with bisphosphonate2 bph-527 16 c3rmgB_ 100.0 32 PDB header:transferase Chain: B: PDB Molecule:octaprenyl-diphosphate synthase; PDBTitle: crystal structure of geranylgeranyl pyrophosphate synthase from2 bacteroides thetaiotaomicron 17 c1yhlA_ 100.0 18 PDB header:transferase Chain: A: PDB Molecule:farnesyl pyrophosphate synthase; PDBTitle: structure of the complex of trypanosoma cruzi farnesyl diphosphate2 synthase with risedronate, dmapp and mg+2 18 c3ez3A_ 100.0 23 PDB header:lyase Chain: A: PDB Molecule:farnesyl pyrophosphate synthase, putative; PDBTitle: crystal structure of plasmodium vivax geranylgeranylpyrophosphate2 synthase pvx_092040 with zoledronate and ipp bound 19 d1rqja_ 100.0 31 Fold:Terpenoid synthases Superfamily:Terpenoid synthases Family:Isoprenyl diphosphate synthases 20 c2e8xB_ 100.0 22 PDB header:transferase Chain: B: PDB Molecule:geranylgeranyl pyrophosphate synthetase; PDBTitle: s. cerevisiae geranylgeranyl pyrophosphate synthase in2 complex with magnesium and gpp 21 d1v4ea_ not modelled 100.0 27 Fold:Terpenoid synthases Superfamily:Terpenoid synthases Family:Isoprenyl diphosphate synthases 22 c3lk5A_ not modelled 100.0 26 PDB header:transferase Chain: A: PDB Molecule:geranylgeranyl pyrophosphate synthase; PDBTitle: crystal structure of putative geranylgeranyl pyrophosphate synthase2 from corynebacterium glutamicum 23 c2o1oB_ not modelled 100.0 20 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:putative farnesyl pyrophosphate synthase; PDBTitle: cryptosporidium parvum putative polyprenyl pyrophosphate2 synthase (cgd4_2550) in complex with risedronate. 24 c3m9uD_ not modelled 100.0 27 PDB header:transferase Chain: D: PDB Molecule:farnesyl-diphosphate synthase; PDBTitle: crystal structure of geranylgeranyl pyrophosphate synthase2 from lactobacillus brevis atcc 367 25 c3tc1A_ not modelled 100.0 28 PDB header:transferase Chain: A: PDB Molecule:octaprenyl pyrophosphate synthase; PDBTitle: crystal structure of octaprenyl pyrophosphate synthase from2 helicobacter pylori 26 c3ts7B_ not modelled 100.0 30 PDB header:transferase Chain: B: PDB Molecule:geranyltranstransferase; PDBTitle: crystal structure of farnesyl diphosphate synthase (target efi-501951)2 from methylococcus capsulatus 27 d1rtra_ not modelled 100.0 31 Fold:Terpenoid synthases Superfamily:Terpenoid synthases Family:Isoprenyl diphosphate synthases 28 c3ipiA_ not modelled 100.0 30 PDB header:transferase Chain: A: PDB Molecule:geranyltranstransferase; PDBTitle: crystal structure of a geranyltranstransferase from the2 methanosarcina mazei 29 c2forB_ not modelled 100.0 31 PDB header:transferase Chain: B: PDB Molecule:geranyltranstransferase; PDBTitle: crystal structure of the shigella flexneri farnesyl pyrophosphate2 synthase complex with an isopentenyl pyrophosphate 30 c2j1pB_ not modelled 100.0 34 PDB header:transferase Chain: B: PDB Molecule:geranylgeranyl pyrophosphate synthetase; PDBTitle: geranylgeranyl diphosphate synthase from sinapis alba in2 complex with ggpp 31 c3lsnA_ not modelled 100.0 33 PDB header:transferase Chain: A: PDB Molecule:geranyltranstransferase; PDBTitle: crystal structure of putative geranyltranstransferase from pseudomonas2 fluorescens pf-5 complexed with magnesium 32 c3ucaB_ not modelled 100.0 30 PDB header:transferase Chain: B: PDB Molecule:geranyltranstransferase; PDBTitle: crystal structure of isoprenoid synthase (target efi-501974) from2 clostridium perfringens 33 c2h8oA_ not modelled 100.0 30 PDB header:transferase Chain: A: PDB Molecule:geranyltranstransferase; PDBTitle: the 1.6a crystal structure of the geranyltransferase from2 agrobacterium tumefaciens 34 c2azjB_ not modelled 100.0 23 PDB header:transferase Chain: B: PDB Molecule:geranylgeranyl pyrophosphate synthetase; PDBTitle: crystal structure for the mutant d81c of sulfolobus2 solfataricus hexaprenyl pyrophosphate synthase 35 c3lomA_ not modelled 100.0 26 PDB header:transferase Chain: A: PDB Molecule:geranyltranstransferase; PDBTitle: crystal structure of geranyltransferase from legionella2 pneumophila 36 c3p8lB_ not modelled 100.0 30 PDB header:transferase Chain: B: PDB Molecule:geranyltranstransferase; PDBTitle: crystal structure of polyprenyl synthase from enterococcus faecalis2 v583 37 c3llwA_ not modelled 100.0 25 PDB header:transferase Chain: A: PDB Molecule:geranyltranstransferase (ispa); PDBTitle: crystal structure of geranyltransferase from helicobacter2 pylori 26695 38 c3m0gB_ not modelled 100.0 31 PDB header:transferase Chain: B: PDB Molecule:farnesyl diphosphate synthase; PDBTitle: crystal structure of putative farnesyl diphosphate synthase from2 rhodobacter capsulatus 39 c2ftzA_ not modelled 100.0 22 PDB header:transferase Chain: A: PDB Molecule:geranyltranstransferase; PDBTitle: crystal structure of geranyltranstransferase (ec 2.5.1.10) (tm0161)2 from thermotoga maritima at 1.90 a resolution 40 c2j1oA_ not modelled 100.0 33 PDB header:transferase Chain: A: PDB Molecule:geranylgeranyl pyrophosphate synthetase; PDBTitle: geranylgeranyl diphosphate synthase from sinapis alba 41 c3qkcB_ not modelled 100.0 16 PDB header:transferase Chain: B: PDB Molecule:geranyl diphosphate synthase small subunit; PDBTitle: crystal structure of geranyl diphosphate synthase small subunit from2 antirrhinum majus 42 c3npkB_ not modelled 100.0 24 PDB header:transferase Chain: B: PDB Molecule:geranyltranstransferase; PDBTitle: the crystal structure of geranyltranstransferase from campylobacter2 jejuni 43 c3kraB_ not modelled 100.0 20 PDB header:transferase Chain: B: PDB Molecule:geranyl diphosphate synthase small subunit; PDBTitle: mint heterotetrameric geranyl pyrophosphate synthase in2 complex with magnesium 44 c3p8rA_ not modelled 100.0 28 PDB header:transferase Chain: A: PDB Molecule:geranyltranstransferase; PDBTitle: crystal structure of polyprenyl synthase from vibrio cholerae 45 d1ezfa_ not modelled 98.0 13 Fold:Terpenoid synthases Superfamily:Terpenoid synthases Family:Squalene synthase 46 c2zcpA_ not modelled 97.1 17 PDB header:transferase Chain: A: PDB Molecule:dehydrosqualene synthase; PDBTitle: crystal structure of the c(30) carotenoid dehydrosqualene2 synthase from staphylococcus aureus complexed with3 farnesyl thiopyrophosphate 47 c3lg5A_ not modelled 91.8 8 PDB header:lyase Chain: A: PDB Molecule:epi-isozizaene synthase; PDBTitle: f198a epi-isozizaene synthase: complex with mg, inorganic2 pyrophosphate and benzyl triethyl ammonium cation 48 d1ps1a_ not modelled 86.5 13 Fold:Terpenoid synthases Superfamily:Terpenoid synthases Family:Aristolochene/pentalenene synthase 49 d1di1a_ not modelled 86.4 13 Fold:Terpenoid synthases Superfamily:Terpenoid synthases Family:Aristolochene/pentalenene synthase 50 d1n1ba2 not modelled 74.3 15 Fold:Terpenoid synthases Superfamily:Terpenoid synthases Family:Terpenoid cyclase C-terminal domain 51 c2oa6B_ not modelled 61.7 16 PDB header:lyase Chain: B: PDB Molecule:aristolochene synthase; PDBTitle: aristolochene synthase from aspergillus terreus complexed with2 pyrophosphate 52 c1hm4A_ not modelled 55.3 11 PDB header:lyase Chain: A: PDB Molecule:pentalenene synthase; PDBTitle: n219l pentalenene synthase 53 d2o3la1 not modelled 41.9 25 Fold:Left-handed superhelix Superfamily:BH3980-like Family:BH3980-like 54 d2hh6a1 not modelled 34.7 29 Fold:Left-handed superhelix Superfamily:BH3980-like Family:BH3980-like 55 c1hx9A_ not modelled 34.4 17 PDB header:lyase Chain: A: PDB Molecule:5-epi-aristolochene synthase; PDBTitle: crystal structure of teas w273s form 1 56 c3n0fA_ not modelled 26.5 15 PDB header:lyase Chain: A: PDB Molecule:isoprene synthase; PDBTitle: crystal structure of isoprene synthase from grey poplar leaves2 (populus x canescens) 57 c3g4dB_ not modelled 24.5 14 PDB header:lyase Chain: B: PDB Molecule:(+)-delta-cadinene synthase isozyme xc1; PDBTitle: crystal structure of (+)-delta-cadinene synthase from gossypium2 arboreum and evolutionary divergence of metal binding motifs for3 catalysis 58 d1s7za_ not modelled 20.1 21 Fold:Another 3-helical bundle Superfamily:B-form DNA mimic Ocr Family:B-form DNA mimic Ocr 59 c2ongA_ not modelled 18.1 17 PDB header:lyase Chain: A: PDB Molecule:4s-limonene synthase; PDBTitle: crystal structure of of limonene synthase with 2-2 fluorogeranyl diphosphate (fgpp). 60 d5easa2 not modelled 17.0 16 Fold:Terpenoid synthases Superfamily:Terpenoid synthases Family:Terpenoid cyclase C-terminal domain 61 c3byvA_ not modelled 15.9 19 PDB header:transferase Chain: A: PDB Molecule:rhoptry kinase; PDBTitle: crystal structure of toxoplasma gondii specific rhoptry2 antigen kinase domain 62 c3p5rB_ not modelled 15.4 15 PDB header:lyase Chain: B: PDB Molecule:taxadiene synthase; PDBTitle: crystal structure of taxadiene synthase from pacific yew (taxus2 brevifolia) in complex with mg2+ and 2-fluorogeranylgeranyl3 diphosphate 63 c3q60A_ not modelled 13.7 14 PDB header:transferase Chain: A: PDB Molecule:rop5b; PDBTitle: crystal structure of virulent allele rop5b pseudokinase domain bound2 to atp 64 d2htja1 not modelled 13.1 37 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:FaeA-like 65 d1ej5a_ not modelled 11.5 15 Fold:Wiscott-Aldrich syndrome protein, WASP, C-terminal domain Superfamily:Wiscott-Aldrich syndrome protein, WASP, C-terminal domain Family:Wiscott-Aldrich syndrome protein, WASP, C-terminal domain 66 d1kiya_ not modelled 10.7 9 Fold:Terpenoid synthases Superfamily:Terpenoid synthases Family:Trichodiene synthase 67 d2v4jc1 not modelled 10.4 13 Fold:DsrC, the gamma subunit of dissimilatory sulfite reductase Superfamily:DsrC, the gamma subunit of dissimilatory sulfite reductase Family:DsrC, the gamma subunit of dissimilatory sulfite reductase 68 c1n20A_ not modelled 9.6 19 PDB header:isomerase Chain: A: PDB Molecule:(+)-bornyl diphosphate synthase; PDBTitle: (+)-bornyl diphosphate synthase: complex with mg and 3-aza-2 2,3-dihydrogeranyl diphosphate 69 c3e7eA_ not modelled 9.2 24 PDB header:transferase Chain: A: PDB Molecule:mitotic checkpoint serine/threonine-protein kinase bub1; PDBTitle: structure and substrate recruitment of the human spindle checkpoint2 kinase bub 70 c2jd3B_ not modelled 8.8 19 PDB header:dna binding protein Chain: B: PDB Molecule:stbb protein; PDBTitle: parr from plasmid pb171 71 c2v62A_ not modelled 7.8 24 PDB header:transferase Chain: A: PDB Molecule:serine/threonine-protein kinase vrk2; PDBTitle: structure of vaccinia-related kinase 2 72 c3s9vD_ not modelled 7.2 14 PDB header:lyase, isomerase Chain: D: PDB Molecule:abietadiene synthase, chloroplastic; PDBTitle: abietadiene synthase from abies grandis 73 c3dzoA_ not modelled 7.0 19 PDB header:transferase Chain: A: PDB Molecule:rhoptry kinase domain; PDBTitle: crystal structure of a rhoptry kinase from toxoplasma gondii 74 c3dfgA_ not modelled 6.6 15 PDB header:recombination Chain: A: PDB Molecule:regulatory protein recx; PDBTitle: crystal structure of recx: a potent inhibitor protein of2 reca from xanthomonas campestris 75 c2jiiA_ not modelled 6.3 24 PDB header:transferase Chain: A: PDB Molecule:serine/threonine-protein kinase vrk3 molecule: vaccinia PDBTitle: structure of vaccinia related kinase 3 76 c3pjaK_ not modelled 6.3 13 PDB header:hydrolase Chain: K: PDB Molecule:translin-associated protein x; PDBTitle: crystal structure of human c3po complex 77 d2fswa1 not modelled 6.1 21 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:HxlR-like 78 c2j5cB_ not modelled 5.4 17 PDB header:lyase Chain: B: PDB Molecule:1,8-cineole synthase; PDBTitle: rational conversion of substrate and product specificity2 in a monoterpene synthase. structural insights into the3 molecular basis of rapid evolution. 79 d1s2xa_ not modelled 5.3 50 Fold:STAT-like Superfamily:Cag-Z Family:Cag-Z 80 c1s2xA_ not modelled 5.3 50 PDB header:unknown function Chain: A: PDB Molecule:cag-z; PDBTitle: crystal structure of cag-z from helicobacter pylori 81 c2pziA_ not modelled 5.3 19 PDB header:transferase Chain: A: PDB Molecule:probable serine/threonine-protein kinase pkng; PDBTitle: crystal structure of protein kinase pkng from mycobacterium2 tuberculosis in complex with tetrahydrobenzothiophene ax20017

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction

Transmembrane helices have been predicted in your sequence to adopt the topology shown below

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0