PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3qkcB_

Fold library id	PDB Header	Molecule	Title
c3qkcB_	PDB header: transferase	Chain: B: PDB Molecule: geranyl diphosphate synthase small subunit;	PDBTitle: crystal structure of geranyl diphosphate synthase small subunit from2 antirrhinum majus

Links to external resources
Added to library: Sat Feb 19 08:42:54 2011

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence L T R T Q T Y R A T I E S D I E S Y L K K A I P I R A P E S V F E P M H H L T F A A P R T S A S A L C V A A C E L V G G D R S D A M A A A A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S S T T S
T T
G G G T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence A V H L M H V A A Y T H E N L P L T D G P M S K S E I Q H K F D P N I E L L T G D G I I P F G L E L M A R S M D P T R N N P D R I L R A I I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
B T T B
S S S S
S S
S
S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence E L T R V M G S E G I V E G Q Y H E L G L N Q L N D L E L I E Y V C K K K E G T L H A C G A A C G A I L G G C D E D K I E K L R R F G L Y V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T T T T
S S
T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . .

Sequence G T V Q G L L G K N R S G F E G R I K E L K E L A V K E L E S F G G E K I E L I R G V F E L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S T T T T
S S T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	L	T	R	T	Q	T	Y	R	A	T	I	E	S	D	I	E	S	Y	L	K	K	A	I	P	I	R	A	P	E	S	V	F	E	P	M	H	H	L	T	F	A	A	P	R	T	S	A	S	A	L	C	V	A	A	C	E	L	V	G	G	D	R	S	D	A	M	A	A	A	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																							S					S	S	T	T											S																T	T			G	G	G	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	A	V	H	L	M	H	V	A	A	Y	T	H	E	N	L	P	L	T	D	G	P	M	S	K	S	E	I	Q	H	K	F	D	P	N	I	E	L	L	T	G	D	G	I	I	P	F	G	L	E	L	M	A	R	S	M	D	P	T	R	N	N	P	D	R	I	L	R	A	I	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)														S			B	T	T	B		S	S	S	S					S	S																								S		S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	E	L	T	R	V	M	G	S	E	G	I	V	E	G	Q	Y	H	E	L	G	L	N	Q	L	N	D	L	E	L	I	E	Y	V	C	K	K	K	E	G	T	L	H	A	C	G	A	A	C	G	A	I	L	G	G	C	D	E	D	K	I	E	K	L	R	R	F	G	L	Y	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							T	T	T	T									T	T			S	S													T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
Sequence	G	T	V	Q	G	L	L	G	K	N	R	S	G	F	E	G	R	I	K	E	L	K	E	L	A	V	K	E	L	E	S	F	G	G	E	K	I	E	L	I	R	G	V	F	E	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								T	T			S	T	T																T	T			S	S									T	T