PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c1yhlA_

Fold library id	PDB Header	Molecule	Title
c1yhlA_	PDB header: transferase	Chain: A: PDB Molecule: farnesyl pyrophosphate synthase;	PDBTitle: structure of the complex of trypanosoma cruzi farnesyl2 diphosphate synthase with risedronate, dmapp and mg+2

Links to external resources
Added to library: Tue Mar 16 13:56:16 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence M A S M E R F L S V Y D E V Q A F L L D Q L Q S K Y E I D P N R A R Y L R I M M D T T C L G G K Y F R G M T V V N V A E G F L A V T Q H D E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
S S S
T T S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence A T K E R I L H D A C V G G W M I E F L Q A H Y L V E D D I M D G S V M R R G K P C W Y R F P G V T T Q C A I N D G I I L K S W T Q I M A W

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
T T
G G G S T T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence H Y F A D R P F L K D L L C L F Q K V D Y A T A V G Q M Y D V T S M C D S N K L D P E V A Q P M T T D F A E F T P A I Y K R I V K Y K T T F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S T T
T T T T T B
G G G
T T S
B
S S
T T
S T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence Y T Y L L P L V M G L F V S E A A A S V E M N L V E R V A H L I G E Y F Q V Q D D V M D C F T P P E Q L G K V G T D I E D A K C S W L A V T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T
G G G S
S
S S
T T T T T

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence F L G K A N A A Q V A E F K A N Y G D K D P A K V A V V K R L Y S E A N L Q A D F A A Y E A E V V R E V E S L I E Q L K V K S P T F A E S V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
T T
T T T T T

. . . . . . . . . 360 . .

Sequence A V V W E K T H K R K K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T

Download: PDB structure FASTA sequence
Hidden Markov model

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	M	A	S	M	E	R	F	L	S	V	Y	D	E	V	Q	A	F	L	L	D	Q	L	Q	S	K	Y	E	I	D	P	N	R	A	R	Y	L	R	I	M	M	D	T	T	C	L	G	G	K	Y	F	R	G	M	T	V	V	N	V	A	E	G	F	L	A	V	T	Q	H	D	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	T																																										S	S	S																	T	T	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	A	T	K	E	R	I	L	H	D	A	C	V	G	G	W	M	I	E	F	L	Q	A	H	Y	L	V	E	D	D	I	M	D	G	S	V	M	R	R	G	K	P	C	W	Y	R	F	P	G	V	T	T	Q	C	A	I	N	D	G	I	I	L	K	S	W	T	Q	I	M	A	W
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																																	T					T	T				G	G	G	S	T	T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	H	Y	F	A	D	R	P	F	L	K	D	L	L	C	L	F	Q	K	V	D	Y	A	T	A	V	G	Q	M	Y	D	V	T	S	M	C	D	S	N	K	L	D	P	E	V	A	Q	P	M	T	T	D	F	A	E	F	T	P	A	I	Y	K	R	I	V	K	Y	K	T	T	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S	T	T		T	T																								T	T	T	B		G	G	G			T	T	S				B		S	S		T	T		S												T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	Y	T	Y	L	L	P	L	V	M	G	L	F	V	S	E	A	A	A	S	V	E	M	N	L	V	E	R	V	A	H	L	I	G	E	Y	F	Q	V	Q	D	D	V	M	D	C	F	T	P	P	E	Q	L	G	K	V	G	T	D	I	E	D	A	K	C	S	W	L	A	V	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T											T	T		G	G	G	S																											S						S	S				T	T	T	T	T
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	F	L	G	K	A	N	A	A	Q	V	A	E	F	K	A	N	Y	G	D	K	D	P	A	K	V	A	V	V	K	R	L	Y	S	E	A	N	L	Q	A	D	F	A	A	Y	E	A	E	V	V	R	E	V	E	S	L	I	E	Q	L	K	V	K	S	P	T	F	A	E	S	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T	T													T	T																	T	T																								T	T	T
	.	.	.	.	.	.	.	.	.	360	.	.
Sequence	A	V	V	W	E	K	T	H	K	R	K	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									T