PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3kraB_

Fold library id	PDB Header	Molecule	Title
c3kraB_	PDB header: transferase	Chain: B: PDB Molecule: geranyl diphosphate synthase small subunit;	PDBTitle: mint heterotetrameric geranyl pyrophosphate synthase in2 complex with magnesium

Links to external resources
Added to library: Sat Aug 28 23:27:24 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence M Q P Y W A A I E A D I E R Y L K K S I T I R P P E T V F G P M H H L T F A A P A T A A S T L C L A A C E L V G G D R S Q A M A A A A A I H

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S
T T
G G G G

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence L V H A A A Y V H E H L P L T D G S R P V S K P A I Q H K Y G P N V E L L T G D G I V P F G F E L L A G S V D P A R T D D P D R I L R V I I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
S S S S S
S S
S S
T
T T
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence E I S R A G G P E G M I S G L H R E E E I V D G N T S L D F I E Y V C K K K Y G E M H A C G A A C G A I L G G A A E E E I Q K L R N F G L Y

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S T T T T T
T T S S
T T T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . .

Sequence Q G T L R G M M E M K N S H Q L I D E N I I G K L K E L A L E E L G G F H G K N A E L M S S L V A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T S
T T S
S S T G G G G

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	M	Q	P	Y	W	A	A	I	E	A	D	I	E	R	Y	L	K	K	S	I	T	I	R	P	P	E	T	V	F	G	P	M	H	H	L	T	F	A	A	P	A	T	A	A	S	T	L	C	L	A	A	C	E	L	V	G	G	D	R	S	Q	A	M	A	A	A	A	A	I	H
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																								S	S														S																T	T			G	G	G	G
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	L	V	H	A	A	A	Y	V	H	E	H	L	P	L	T	D	G	S	R	P	V	S	K	P	A	I	Q	H	K	Y	G	P	N	V	E	L	L	T	G	D	G	I	V	P	F	G	F	E	L	L	A	G	S	V	D	P	A	R	T	D	D	P	D	R	I	L	R	V	I	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											T				S	S	S	S	S				S	S					S	S																							T			T	T		T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	E	I	S	R	A	G	G	P	E	G	M	I	S	G	L	H	R	E	E	E	I	V	D	G	N	T	S	L	D	F	I	E	Y	V	C	K	K	K	Y	G	E	M	H	A	C	G	A	A	C	G	A	I	L	G	G	A	A	E	E	E	I	Q	K	L	R	N	F	G	L	Y
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						T	S	T	T	T									T	T			T	T	S	S													T															T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
Sequence	Q	G	T	L	R	G	M	M	E	M	K	N	S	H	Q	L	I	D	E	N	I	I	G	K	L	K	E	L	A	L	E	E	L	G	G	F	H	G	K	N	A	E	L	M	S	S	L	V	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											T	T	T	S																				T	T	S		S	S					T	G	G	G	G