PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c2j1oA_

Fold library id	PDB Header	Molecule	Title
c2j1oA_	PDB header: transferase	Chain: A: PDB Molecule: geranylgeranyl pyrophosphate synthetase;	PDBTitle: geranylgeranyl diphosphate synthase from sinapis alba

Links to external resources
Added to library: Tue Mar 16 12:45:14 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence P I S Y I I R K A D S V N K A L D S A V P L R E P L K I H E A M R Y S L L A G G K R V R P V L C I A A C E L V G G E E S L A M P A A C A V E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S S S
T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence M I H T M S L I H D D V Y G E D V A V L A G D A L L S F A F E H L A S A T S S E V S P A R V V R A V G E L A K A I G T E G L V A G Q V V D I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T T S
T T T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence S N V G L E H L K F I H L H K T A A L L E A S A V L G G I I G G G S D E E I E R L R K F A R C I G L L F Q V V D D I L D V T I A D K L T Y P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T
T T T S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . .

Sequence K L M G L E K S R E F A E K L N T E A R D Q L L G F D S D K V A P L L A L A N Y I A N R Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
T T T S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	P	I	S	Y	I	I	R	K	A	D	S	V	N	K	A	L	D	S	A	V	P	L	R	E	P	L	K	I	H	E	A	M	R	Y	S	L	L	A	G	G	K	R	V	R	P	V	L	C	I	A	A	C	E	L	V	G	G	E	E	S	L	A	M	P	A	A	C	A	V	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																				S				S	S													S																	T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	M	I	H	T	M	S	L	I	H	D	D	V	Y	G	E	D	V	A	V	L	A	G	D	A	L	L	S	F	A	F	E	H	L	A	S	A	T	S	S	E	V	S	P	A	R	V	V	R	A	V	G	E	L	A	K	A	I	G	T	E	G	L	V	A	G	Q	V	V	D	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																																					S		T	T	S																	T	T	T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	S	N	V	G	L	E	H	L	K	F	I	H	L	H	K	T	A	A	L	L	E	A	S	A	V	L	G	G	I	I	G	G	G	S	D	E	E	I	E	R	L	R	K	F	A	R	C	I	G	L	L	F	Q	V	V	D	D	I	L	D	V	T	I	A	D	K	L	T	Y	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																T															T	T																																T	T	T	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
Sequence	K	L	M	G	L	E	K	S	R	E	F	A	E	K	L	N	T	E	A	R	D	Q	L	L	G	F	D	S	D	K	V	A	P	L	L	A	L	A	N	Y	I	A	N	R	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S																				T	T	T	S