Secondary structure and disorder prediction

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Sequence		M	K	N	V	L	I	L	G	A	G	G	Q	I	A	R	H	V	I	N	Q	L	A	D	K	Q	T	I	K	Q	T	L	F	A	R	Q	P	A	K	I	H	K	P	Y	P	T	N	K	M	Q	T	T	S	G	K	K	V	I	Q	D	R
Secondary structure
SS confidence
Disorder		?	?	?																															?	?					?						?		?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
Sequence
Secondary structure
SS confidence
Disorder
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3qvo chain A Region: 2 - 46 Aligned: 45 Modelled: 45 Confidence: 95.7% Identity: 100% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:nmra family protein; PDBTitle: structure of a rossmann-fold nad(p)-binding family protein from2 shigella flexneri. Phyre2 PDB 3dhn chain A Region: 1 - 24 Aligned: 24 Modelled: 24 Confidence: 95.5% Identity: 21% PDB header:isomerase, lyase Chain: A: PDB Molecule:nad-dependent epimerase/dehydratase; PDBTitle: crystal structure of the putative epimerase q89z24_bactn2 from bacteroides thetaiotaomicron. northeast structural3 genomics consortium target btr310. Phyre2 PDB 1oc2 chain A Region: 1 - 24 Aligned: 24 Modelled: 24 Confidence: 95.3% Identity: 21% Fold: NAD(P)-binding Rossmann-fold domains Superfamily: NAD(P)-binding Rossmann-fold domains Family: Tyrosine-dependent oxidoreductases Phyre2 PDB 2q1w chain C Region: 1 - 24 Aligned: 24 Modelled: 24 Confidence: 95.0% Identity: 42% PDB header:sugar binding protein Chain: C: PDB Molecule:putative nucleotide sugar epimerase/ dehydratase; PDBTitle: crystal structure of the bordetella bronchiseptica enzyme wbmh in2 complex with nad+ Phyre2 PDB 1hdo chain A Region: 1 - 46 Aligned: 45 Modelled: 46 Confidence: 94.9% Identity: 22% Fold: NAD(P)-binding Rossmann-fold domains Superfamily: NAD(P)-binding Rossmann-fold domains Family: Tyrosine-dependent oxidoreductases Phyre2 PDB 1bxk chain A Region: 1 - 24 Aligned: 24 Modelled: 24 Confidence: 94.8% Identity: 25% Fold: NAD(P)-binding Rossmann-fold domains Superfamily: NAD(P)-binding Rossmann-fold domains Family: Tyrosine-dependent oxidoreductases Phyre2 PDB 3c1o chain A Region: 1 - 24 Aligned: 24 Modelled: 24 Confidence: 94.2% Identity: 21% PDB header:oxidoreductase Chain: A: PDB Molecule:eugenol synthase; PDBTitle: the multiple phenylpropene synthases in both clarkia2 breweri and petunia hybrida represent two distinct lineages Phyre2 PDB 3e48 chain B Region: 2 - 44 Aligned: 43 Modelled: 42 Confidence: 93.3% Identity: 21% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:putative nucleoside-diphosphate-sugar epimerase; PDBTitle: crystal structure of a nucleoside-diphosphate-sugar epimerase2 (sav0421) from staphylococcus aureus, northeast structural genomics3 consortium target zr319 Phyre2 PDB 3gpi chain A Region: 1 - 24 Aligned: 23 Modelled: 24 Confidence: 93.0% Identity: 22% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:nad-dependent epimerase/dehydratase; PDBTitle: structure of putative nad-dependent epimerase/dehydratase2 from methylobacillus flagellatus Phyre2 PDB 2qx7 chain A Region: 1 - 24 Aligned: 24 Modelled: 24 Confidence: 93.0% Identity: 33% PDB header:plant protein Chain: A: PDB Molecule:eugenol synthase 1; PDBTitle: structure of eugenol synthase from ocimum basilicum Phyre2 PDB 2bll chain A domain 1 Region: 1 - 53 Aligned: 52 Modelled: 53 Confidence: 92.9% Identity: 23% Fold: NAD(P)-binding Rossmann-fold domains Superfamily: NAD(P)-binding Rossmann-fold domains Family: Tyrosine-dependent oxidoreductases Phyre2 PDB 2vrc chain D Region: 1 - 39 Aligned: 38 Modelled: 38 Confidence: 92.7% Identity: 24% PDB header:oxidoreductase Chain: D: PDB Molecule:triphenylmethane reductase; PDBTitle: crystal structure of the citrobacter sp. triphenylmethane2 reductase complexed with nadp(h) Phyre2 PDB 3icp chain A Region: 1 - 24 Aligned: 23 Modelled: 24 Confidence: 92.6% Identity: 26% PDB header:isomerase Chain: A: PDB Molecule:nad-dependent epimerase/dehydratase; PDBTitle: crystal structure of udp-galactose 4-epimerase Phyre2 PDB 1r6d chain A Region: 1 - 24 Aligned: 23 Modelled: 23 Confidence: 92.4% Identity: 35% Fold: NAD(P)-binding Rossmann-fold domains Superfamily: NAD(P)-binding Rossmann-fold domains Family: Tyrosine-dependent oxidoreductases Phyre2 PDB 3rfx chain B Region: 1 - 24 Aligned: 24 Modelled: 24 Confidence: 92.2% Identity: 42% PDB header:oxidoreductase Chain: B: PDB Molecule:uronate dehydrogenase; PDBTitle: crystal structure of uronate dehydrogenase from agrobacterium2 tumefaciens, y136a mutant complexed with nad Phyre2 PDB 1udc chain A Region: 1 - 24 Aligned: 23 Modelled: 24 Confidence: 91.8% Identity: 39% Fold: NAD(P)-binding Rossmann-fold domains Superfamily: NAD(P)-binding Rossmann-fold domains Family: Tyrosine-dependent oxidoreductases Phyre2 PDB 2ggs chain B Region: 1 - 24 Aligned: 23 Modelled: 24 Confidence: 91.7% Identity: 35% PDB header:oxidoreductase Chain: B: PDB Molecule:273aa long hypothetical dtdp-4-dehydrorhamnose PDBTitle: crystal structure of hypothetical dtdp-4-dehydrorhamnose2 reductase from sulfolobus tokodaii Phyre2 PDB 2hun chain B Region: 1 - 24 Aligned: 24 Modelled: 24 Confidence: 91.5% Identity: 29% PDB header:lyase Chain: B: PDB Molecule:336aa long hypothetical dtdp-glucose 4,6-dehydratase; PDBTitle: crystal structure of hypothetical protein ph0414 from pyrococcus2 horikoshii ot3 Phyre2 PDB 3m2p chain D Region: 1 - 24 Aligned: 23 Modelled: 24 Confidence: 91.4% Identity: 17% PDB header:isomerase Chain: D: PDB Molecule:udp-n-acetylglucosamine 4-epimerase; PDBTitle: the crystal structure of udp-n-acetylglucosamine 4-epimerase2 from bacillus cereus Phyre2 PDB 2pk3 chain B Region: 1 - 24 Aligned: 23 Modelled: 23 Confidence: 91.2% Identity: 30% PDB header:oxidoreductase Chain: B: PDB Molecule:gdp-6-deoxy-d-lyxo-4-hexulose reductase; PDBTitle: crystal structure of a gdp-4-keto-6-deoxy-d-mannose reductase Phyre2 1 c3qvoA_ 2 c3dhnA_ 3 d1oc2a_ 4 c2q1wC_ 5 d1hdoa_ 6 d1bxka_ 7 c3c1oA_ 8 c3e48B_ 9 c3gpiA_ 10 c2qx7A_ 11 d2blla1 12 c2vrcD_ 13 c3icpA_ 14 d1r6da_ 15 c3rfxB_ 16 d1udca_ 17 c2ggsB_ 18 c2hunB_ 19 c3m2pD_ 20 c2pk3B_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3qvoA_ 95.7 100 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:nmra family protein; PDBTitle: structure of a rossmann-fold nad(p)-binding family protein from2 shigella flexneri. 2 c3dhnA_ 95.5 21 PDB header:isomerase, lyase Chain: A: PDB Molecule:nad-dependent epimerase/dehydratase; PDBTitle: crystal structure of the putative epimerase q89z24_bactn2 from bacteroides thetaiotaomicron. northeast structural3 genomics consortium target btr310. 3 d1oc2a_ 95.3 21 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 4 c2q1wC_ 95.0 42 PDB header:sugar binding protein Chain: C: PDB Molecule:putative nucleotide sugar epimerase/ dehydratase; PDBTitle: crystal structure of the bordetella bronchiseptica enzyme wbmh in2 complex with nad+ 5 d1hdoa_ 94.9 22 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 6 d1bxka_ 94.8 25 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 7 c3c1oA_ 94.2 21 PDB header:oxidoreductase Chain: A: PDB Molecule:eugenol synthase; PDBTitle: the multiple phenylpropene synthases in both clarkia2 breweri and petunia hybrida represent two distinct lineages 8 c3e48B_ 93.3 21 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:putative nucleoside-diphosphate-sugar epimerase; PDBTitle: crystal structure of a nucleoside-diphosphate-sugar epimerase2 (sav0421) from staphylococcus aureus, northeast structural genomics3 consortium target zr319 9 c3gpiA_ 93.0 22 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:nad-dependent epimerase/dehydratase; PDBTitle: structure of putative nad-dependent epimerase/dehydratase2 from methylobacillus flagellatus 10 c2qx7A_ 93.0 33 PDB header:plant protein Chain: A: PDB Molecule:eugenol synthase 1; PDBTitle: structure of eugenol synthase from ocimum basilicum 11 d2blla1 92.9 23 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 12 c2vrcD_ 92.7 24 PDB header:oxidoreductase Chain: D: PDB Molecule:triphenylmethane reductase; PDBTitle: crystal structure of the citrobacter sp. triphenylmethane2 reductase complexed with nadp(h) 13 c3icpA_ 92.6 26 PDB header:isomerase Chain: A: PDB Molecule:nad-dependent epimerase/dehydratase; PDBTitle: crystal structure of udp-galactose 4-epimerase 14 d1r6da_ 92.4 35 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 15 c3rfxB_ 92.2 42 PDB header:oxidoreductase Chain: B: PDB Molecule:uronate dehydrogenase; PDBTitle: crystal structure of uronate dehydrogenase from agrobacterium2 tumefaciens, y136a mutant complexed with nad 16 d1udca_ 91.8 39 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 17 c2ggsB_ 91.7 35 PDB header:oxidoreductase Chain: B: PDB Molecule:273aa long hypothetical dtdp-4-dehydrorhamnose PDBTitle: crystal structure of hypothetical dtdp-4-dehydrorhamnose2 reductase from sulfolobus tokodaii 18 c2hunB_ 91.5 29 PDB header:lyase Chain: B: PDB Molecule:336aa long hypothetical dtdp-glucose 4,6-dehydratase; PDBTitle: crystal structure of hypothetical protein ph0414 from pyrococcus2 horikoshii ot3 19 c3m2pD_ 91.4 17 PDB header:isomerase Chain: D: PDB Molecule:udp-n-acetylglucosamine 4-epimerase; PDBTitle: the crystal structure of udp-n-acetylglucosamine 4-epimerase2 from bacillus cereus 20 c2pk3B_ 91.2 30 PDB header:oxidoreductase Chain: B: PDB Molecule:gdp-6-deoxy-d-lyxo-4-hexulose reductase; PDBTitle: crystal structure of a gdp-4-keto-6-deoxy-d-mannose reductase 21 d2c5aa1 not modelled 90.9 38 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 22 d2q46a1 not modelled 90.8 29 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 23 d2b69a1 not modelled 90.5 30 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 24 c2b69A_ not modelled 90.5 30 PDB header:lyase Chain: A: PDB Molecule:udp-glucuronate decarboxylase 1; PDBTitle: crystal structure of human udp-glucoronic acid decarboxylase 25 c2pzlB_ not modelled 90.5 26 PDB header:sugar binding protein Chain: B: PDB Molecule:putative nucleotide sugar epimerase/ dehydratase; PDBTitle: crystal structure of the bordetella bronchiseptica enzyme2 wbmg in complex with nad and udp 26 c2p5uC_ not modelled 90.3 35 PDB header:isomerase Chain: C: PDB Molecule:udp-glucose 4-epimerase; PDBTitle: crystal structure of thermus thermophilus hb8 udp-glucose 4-2 epimerase complex with nad 27 d1sb8a_ not modelled 90.0 30 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 28 d1n2sa_ not modelled 89.9 35 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 29 c3sc6F_ not modelled 89.9 29 PDB header:oxidoreductase Chain: F: PDB Molecule:dtdp-4-dehydrorhamnose reductase; PDBTitle: 2.65 angstrom resolution crystal structure of dtdp-4-dehydrorhamnose2 reductase (rfbd) from bacillus anthracis str. ames in complex with3 nadp 30 d2fmua1 not modelled 89.8 30 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 31 d1rpna_ not modelled 89.8 26 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 32 c3ay3C_ not modelled 89.5 21 PDB header:oxidoreductase Chain: C: PDB Molecule:nad-dependent epimerase/dehydratase; PDBTitle: crystal structure of glucuronic acid dehydrogeanse from2 chromohalobacter salexigens 33 c2x4gA_ not modelled 89.2 26 PDB header:isomerase Chain: A: PDB Molecule:nucleoside-diphosphate-sugar epimerase; PDBTitle: crystal structure of pa4631, a nucleoside-diphosphate-sugar2 epimerase from pseudomonas aeruginosa 34 d1kewa_ not modelled 89.2 35 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 35 c2zklA_ not modelled 88.9 30 PDB header:isomerase Chain: A: PDB Molecule:capsular polysaccharide synthesis enzyme cap5f; PDBTitle: crystal structure of capsular polysaccharide assembling protein capf2 from staphylococcus aureus 36 c2yy7B_ not modelled 88.7 35 PDB header:oxidoreductase Chain: B: PDB Molecule:l-threonine dehydrogenase; PDBTitle: crystal structure of thermolabile l-threonine dehydrogenase from2 flavobacterium frigidimaris kuc-1 37 d1db3a_ not modelled 88.5 35 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 38 d1hyea1 not modelled 88.4 39 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:LDH N-terminal domain-like 39 d1npya1 not modelled 88.4 25 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Aminoacid dehydrogenase-like, C-terminal domain 40 c3slgB_ not modelled 88.4 39 PDB header:transferase Chain: B: PDB Molecule:pbgp3 protein; PDBTitle: crystal structure of pbgp3 protein from burkholderia pseudomallei 41 d1z45a2 not modelled 88.0 35 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 42 d1wvga1 not modelled 87.9 22 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 43 c2exxB_ not modelled 87.8 26 PDB header:unknown function Chain: B: PDB Molecule:hscarg protein; PDBTitle: crystal structure of hscarg from homo sapiens in complex with nadp 44 c2rh8A_ not modelled 87.7 26 PDB header:oxidoreductase Chain: A: PDB Molecule:anthocyanidin reductase; PDBTitle: structure of apo anthocyanidin reductase from vitis vinifera 45 d1ek6a_ not modelled 87.6 33 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 46 c3lu1C_ not modelled 87.6 30 PDB header:isomerase Chain: C: PDB Molecule:wbgu; PDBTitle: crystal structure analysis of wbgu: a udp-galnac 4-epimerase 47 d1e6ua_ not modelled 87.6 26 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 48 c2q1uA_ not modelled 87.4 22 PDB header:sugar binding protein Chain: A: PDB Molecule:putative nucleotide sugar epimerase/ dehydratase; PDBTitle: crystal structure of the bordetella bronchiseptica enzyme wbmf in2 complex with nad+ and udp 49 d1xgka_ not modelled 86.9 26 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 50 d1rkxa_ not modelled 86.8 22 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 51 c2hrzA_ not modelled 86.5 26 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:nucleoside-diphosphate-sugar epimerase; PDBTitle: the crystal structure of the nucleoside-diphosphate-sugar epimerase2 from agrobacterium tumefaciens 52 d1n7ha_ not modelled 86.3 35 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 53 d1gy8a_ not modelled 86.2 40 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 54 d2a35a1 not modelled 86.1 30 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 55 c2iodD_ not modelled 86.0 26 PDB header:oxidoreductase Chain: D: PDB Molecule:dihydroflavonol 4-reductase; PDBTitle: binding of two substrate analogue molecules to2 dihydroflavonol-4-reductase alters the functional geometry3 of the catalytic site 56 c2z1mC_ not modelled 85.8 35 PDB header:lyase Chain: C: PDB Molecule:gdp-d-mannose dehydratase; PDBTitle: crystal structure of gdp-d-mannose dehydratase from aquifex aeolicus2 vf5 57 c2ydyA_ not modelled 85.7 30 PDB header:oxidoreductase Chain: A: PDB Molecule:methionine adenosyltransferase 2 subunit beta; PDBTitle: crystal structure of human s-adenosylmethionine synthetase2 2, beta subunit in orthorhombic crystal form 58 d2bkaa1 not modelled 85.4 35 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 59 c3e8xA_ not modelled 85.0 39 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative nad-dependent epimerase/dehydratase; PDBTitle: putative nad-dependent epimerase/dehydratase from bacillus halodurans. 60 c2c20D_ not modelled 84.7 36 PDB header:isomerase Chain: D: PDB Molecule:udp-glucose 4-epimerase; PDBTitle: crystal structure of udp-glucose 4-epimerase 61 d1p77a1 not modelled 84.3 40 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Aminoacid dehydrogenase-like, C-terminal domain 62 c1t2aC_ not modelled 83.6 30 PDB header:structural genomics,lyase Chain: C: PDB Molecule:gdp-mannose 4,6 dehydratase; PDBTitle: crystal structure of human gdp-d-mannose 4,6-dehydratase 63 d1t2aa_ not modelled 83.6 30 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 64 c3l6eA_ not modelled 83.5 21 PDB header:oxidoreductase Chain: A: PDB Molecule:oxidoreductase, short-chain dehydrogenase/reductase family; PDBTitle: crystal structure of putative short chain dehydrogenase/reductase2 family oxidoreductase from aeromonas hydrophila subsp. hydrophila3 atcc 7966 65 c3eheB_ not modelled 82.0 29 PDB header:isomerase Chain: B: PDB Molecule:udp-glucose 4-epimerase (gale-1); PDBTitle: crystal structure of udp-glucose 4 epimerase (gale-1) from2 archaeoglobus fulgidus 66 c1npyA_ not modelled 81.9 25 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical shikimate 5-dehydrogenase-like PDBTitle: structure of shikimate 5-dehydrogenase-like protein hi0607 67 d1y1pa1 not modelled 81.8 43 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 68 c1n7gB_ not modelled 81.4 35 PDB header:lyase Chain: B: PDB Molecule:gdp-d-mannose-4,6-dehydratase; PDBTitle: crystal structure of the gdp-mannose 4,6-dehydratase2 ternary complex with nadph and gdp-rhamnose. 69 c3i5mA_ not modelled 81.2 43 PDB header:oxidoreductase Chain: A: PDB Molecule:putative leucoanthocyanidin reductase 1; PDBTitle: structure of the apo form of leucoanthocyanidin reductase from vitis2 vinifera 70 c3nzoB_ not modelled 81.2 26 PDB header:lyase Chain: B: PDB Molecule:udp-n-acetylglucosamine 4,6-dehydratase; PDBTitle: udp-n-acetylglucosamine 4,6-dehydratase from vibrio fischeri. 71 c3enkB_ not modelled 80.8 26 PDB header:isomerase Chain: B: PDB Molecule:udp-glucose 4-epimerase; PDBTitle: 1.9a crystal structure of udp-glucose 4-epimerase from2 burkholderia pseudomallei 72 d2cmda1 not modelled 80.7 39 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:LDH N-terminal domain-like 73 c3a1nB_ not modelled 80.5 38 PDB header:oxidoreductase Chain: B: PDB Molecule:ndp-sugar epimerase; PDBTitle: crystal structure of l-threonine dehydrogenase from2 hyperthermophilic archaeon thermoplasma volcanium 74 c1z7eC_ not modelled 80.0 38 PDB header:hydrolase Chain: C: PDB Molecule:protein arna; PDBTitle: crystal structure of full length arna 75 d1nvta1 not modelled 79.8 41 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Aminoacid dehydrogenase-like, C-terminal domain 76 c2gasA_ not modelled 79.7 33 PDB header:oxidoreductase Chain: A: PDB Molecule:isoflavone reductase; PDBTitle: crystal structure of isoflavone reductase 77 d1qyca_ not modelled 79.6 39 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 78 c2gn9B_ not modelled 79.2 22 PDB header:lyase Chain: B: PDB Molecule:udp-glcnac c6 dehydratase; PDBTitle: crystal structure of udp-glcnac inverting 4,6-dehydratase in complex2 with nadp and udp-glc 79 d1vl0a_ not modelled 78.9 48 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 80 c3ew7A_ not modelled 78.8 19 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:lmo0794 protein; PDBTitle: crystal structure of the lmo0794 protein from listeria2 monocytogenes. northeast structural genomics consortium3 target lmr162. 81 c3r6dA_ not modelled 78.5 43 PDB header:lyase, isomerase Chain: A: PDB Molecule:nad-dependent epimerase/dehydratase; PDBTitle: crystal structure of nad-dependent epimerase/dehydratase from2 veillonella parvula dsm 2008 with cz-methylated lysine 82 c3oh8A_ not modelled 78.1 30 PDB header:isomerase Chain: A: PDB Molecule:nucleoside-diphosphate sugar epimerase (sula family); PDBTitle: crystal structure of the nucleoside-diphosphate sugar epimerase from2 corynebacterium glutamicum. northeast structural genomics consortium3 target cgr91 83 d1eq2a_ not modelled 78.1 29 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 84 c2x86K_ not modelled 77.5 29 PDB header:isomerase Chain: K: PDB Molecule:adp-l-glycero-d-manno-heptose-6-epimerase; PDBTitle: agme bound to adp-b-mannose 85 c3iusB_ not modelled 77.4 32 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized conserved protein; PDBTitle: the structure of a functionally unknown conserved protein2 from silicibacter pomeroyi dss 86 c2p4hX_ not modelled 77.1 22 PDB header:plant protein Chain: X: PDB Molecule:vestitone reductase; PDBTitle: crystal structure of vestitone reductase from alfalfa2 (medicago sativa l.) 87 c3dqpA_ not modelled 75.6 19 PDB header:oxidoreductase Chain: A: PDB Molecule:oxidoreductase ylbe; PDBTitle: crystal structure of the oxidoreductase ylbe from2 lactococcus lactis, northeast structural genomics3 consortium target kr121. 88 d1qyda_ not modelled 75.4 30 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 89 c3l77A_ not modelled 75.1 33 PDB header:oxidoreductase Chain: A: PDB Molecule:short-chain alcohol dehydrogenase; PDBTitle: x-ray structure alcohol dehydrogenase from archaeon thermococcus2 sibiricus complexed with 5-hydroxy-nadp 90 d1pqua1 not modelled 74.8 24 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 91 c3h2sA_ not modelled 73.8 19 PDB header:oxidoreductase Chain: A: PDB Molecule:putative nadh-flavin reductase; PDBTitle: crystal structure of the q03b84 protein from lactobacillus2 casei. northeast structural genomics consortium target3 lcr19. 92 d1e5qa1 not modelled 73.3 41 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 93 c3o8qB_ not modelled 71.7 42 PDB header:oxidoreductase Chain: B: PDB Molecule:shikimate 5-dehydrogenase i alpha; PDBTitle: 1.45 angstrom resolution crystal structure of shikimate 5-2 dehydrogenase (aroe) from vibrio cholerae 94 d1orra_ not modelled 70.2 19 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 95 c3pwzA_ not modelled 70.0 31 PDB header:oxidoreductase Chain: A: PDB Molecule:shikimate dehydrogenase 3; PDBTitle: crystal structure of an ael1 enzyme from pseudomonas putida 96 c2zcuA_ not modelled 68.8 40 PDB header:oxidoreductase Chain: A: PDB Molecule:uncharacterized oxidoreductase ytfg; PDBTitle: crystal structure of a new type of nadph-dependent quinone2 oxidoreductase (qor2) from escherichia coli 97 c1z45A_ not modelled 67.1 35 PDB header:isomerase Chain: A: PDB Molecule:gal10 bifunctional protein; PDBTitle: crystal structure of the gal10 fusion protein galactose2 mutarotase/udp-galactose 4-epimerase from saccharomyces3 cerevisiae complexed with nad, udp-glucose, and galactose 98 d1i24a_ not modelled 66.5 22 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 99 c3donA_ not modelled 66.5 28 PDB header:oxidoreductase Chain: A: PDB Molecule:shikimate dehydrogenase; PDBTitle: crystal structure of shikimate dehydrogenase from staphylococcus2 epidermidis 100 c3etjB_ not modelled 66.4 41 PDB header:lyase Chain: B: PDB Molecule:phosphoribosylaminoimidazole carboxylase atpase PDBTitle: crystal structure e. coli purk in complex with mg, adp, and2 pi 101 d1mlda1 not modelled 66.2 33 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:LDH N-terminal domain-like 102 d1fjha_ not modelled 66.2 21 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 103 c2v6gA_ not modelled 65.1 27 PDB header:oxidoreductase Chain: A: PDB Molecule:progesterone 5-beta-reductase; PDBTitle: structure of progesterone 5beta-reductase from digitalis2 lanata in complex with nadp 104 c3i4fD_ not modelled 62.8 21 PDB header:oxidoreductase Chain: D: PDB Molecule:3-oxoacyl-[acyl-carrier protein] reductase; PDBTitle: structure of putative 3-oxoacyl-reductase from bacillus thuringiensis 105 c2hk8B_ not modelled 62.1 43 PDB header:oxidoreductase Chain: B: PDB Molecule:shikimate dehydrogenase; PDBTitle: crystal structure of shikimate dehydrogenase from aquifex2 aeolicus at 2.35 angstrom resolution 106 c1e5lA_ not modelled 61.9 41 PDB header:oxidoreductase Chain: A: PDB Molecule:saccharopine reductase; PDBTitle: apo saccharopine reductase from magnaporthe grisea 107 d1vi2a1 not modelled 61.7 28 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Aminoacid dehydrogenase-like, C-terminal domain 108 c3tozA_ not modelled 61.3 31 PDB header:oxidoreductase Chain: A: PDB Molecule:shikimate dehydrogenase; PDBTitle: 2.2 angstrom crystal structure of shikimate 5-dehydrogenase from2 listeria monocytogenes in complex with nad. 109 c2z2vA_ not modelled 60.8 59 PDB header:oxidoreductase Chain: A: PDB Molecule:hypothetical protein ph1688; PDBTitle: crystal structure of l-lysine dehydrogenase from2 hyperthermophilic archaeon pyrococcus horikoshii 110 c1gpjA_ not modelled 59.0 28 PDB header:reductase Chain: A: PDB Molecule:glutamyl-trna reductase; PDBTitle: glutamyl-trna reductase from methanopyrus kandleri 111 c2eggA_ not modelled 57.1 31 PDB header:oxidoreductase Chain: A: PDB Molecule:shikimate 5-dehydrogenase; PDBTitle: crystal structure of shikimate 5-dehydrogenase (aroe) from2 geobacillus kaustophilus 112 c1nytC_ not modelled 56.2 29 PDB header:oxidoreductase Chain: C: PDB Molecule:shikimate 5-dehydrogenase; PDBTitle: shikimate dehydrogenase aroe complexed with nadp+ 113 c3orfC_ not modelled 56.2 35 PDB header:oxidoreductase Chain: C: PDB Molecule:dihydropteridine reductase; PDBTitle: crystal structure of dihydropteridine reductase from dictyostelium2 discoideum 114 c2nloA_ not modelled 56.0 22 PDB header:oxidoreductase Chain: A: PDB Molecule:shikimate dehydrogenase; PDBTitle: crystal structure of the quinate dehydrogenase from corynebacterium2 glutamicum 115 c2axqA_ not modelled 54.9 43 PDB header:oxidoreductase Chain: A: PDB Molecule:saccharopine dehydrogenase; PDBTitle: apo histidine-tagged saccharopine dehydrogenase (l-glu2 forming) from saccharomyces cerevisiae 116 d1nyta1 not modelled 52.5 29 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Aminoacid dehydrogenase-like, C-terminal domain 117 c3fbtB_ not modelled 52.2 33 PDB header:oxidoreductase, lyase Chain: B: PDB Molecule:chorismate mutase and shikimate 5-dehydrogenase PDBTitle: crystal structure of a chorismate mutase/shikimate 5-2 dehydrogenase fusion protein from clostridium3 acetobutylicum 118 c2jahB_ not modelled 51.9 35 PDB header:oxidoreductase Chain: B: PDB Molecule:clavulanic acid dehydrogenase; PDBTitle: biochemical and structural analysis of the clavulanic acid2 dehydeogenase (cad) from streptomyces clavuligerus 119 d1mjfa_ not modelled 51.7 50 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:Spermidine synthase 120 d2b2ca1 not modelled 51.6 63 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:Spermidine synthase

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0