PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c3r6dA_

Fold library id	PDB Header	Molecule	Title
c3r6dA_	PDB header: lyase, isomerase	Chain: A: PDB Molecule: nad-dependent epimerase/dehydratase;	PDBTitle: crystal structure of nad-dependent epimerase/dehydratase from2 veillonella parvula dsm 2008 with cz-methylated lysine

Links to external resources
Added to library: Sat Apr 23 08:57:21 2011

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence S N A X Y Y I T I L G A A G Q I A Q L T A T L L T Y T D X H I T L Y G R Q L K T R I P P E I I D H E R V T V I E G S F Q N P G L E Q A V T N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S T T S T T T
S S S
T S T T
T T
T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence A E V V F V G A X E S G S D X A S I V K A L S R N I R R V I G V S X A G L S G E F P V A L E K W T F D N L P I S Y V Q G E R Q A R N V L R E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
T T T T S
S
T S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence S N L N Y T I L R L T W L Y N D P E T D Y E L I P E G A Q F N D A Q V S R E A V V K A I F D I L H A A D E T P F H R T S I G V G E P G T H Y

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
S
T T S
T
S
G G G T T
T T

. . . . .

Sequence D P S F H

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	S	N	A	X	Y	Y	I	T	I	L	G	A	A	G	Q	I	A	Q	L	T	A	T	L	L	T	Y	T	D	X	H	I	T	L	Y	G	R	Q	L	K	T	R	I	P	P	E	I	I	D	H	E	R	V	T	V	I	E	G	S	F	Q	N	P	G	L	E	Q	A	V	T	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											S	T	T	S	T	T	T																			S	S					S						T	S	T	T								T	T									T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	A	E	V	V	F	V	G	A	X	E	S	G	S	D	X	A	S	I	V	K	A	L	S	R	N	I	R	R	V	I	G	V	S	X	A	G	L	S	G	E	F	P	V	A	L	E	K	W	T	F	D	N	L	P	I	S	Y	V	Q	G	E	R	Q	A	R	N	V	L	R	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S					S																												T	T	T	T	S		S											T	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	S	N	L	N	Y	T	I	L	R	L	T	W	L	Y	N	D	P	E	T	D	Y	E	L	I	P	E	G	A	Q	F	N	D	A	Q	V	S	R	E	A	V	V	K	A	I	F	D	I	L	H	A	A	D	E	T	P	F	H	R	T	S	I	G	V	G	E	P	G	T	H	Y
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S		S																							T	T	S																					T		S			G	G	G	T	T								T	T
	.	.	.	.	.
Sequence	D	P	S	F	H
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)