BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= batch____
         (60 letters)

Database: uniref50.fasta 
           3,077,464 sequences; 1,040,396,356 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q2EER5 Putative uncharacterized protein ymjC n=7 Tax=Es...   105   4e-22
UniRef50_A7ZLF6 NmrA family protein n=51 Tax=Bacteria RepID=A7ZL...   101   8e-21

>UniRef50_Q2EER5 Putative uncharacterized protein ymjC n=7 Tax=Escherichia coli
          RepID=YMJC_ECOLI
          Length = 60

 Score =  105 bits (263), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 60/60 (100%), Positives = 60/60 (100%)

Query: 1  MKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKPYPTNKMQTTSGKKVIQDR 60
          MKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKPYPTNKMQTTSGKKVIQDR
Sbjct: 1  MKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKPYPTNKMQTTSGKKVIQDR 60


>UniRef50_A7ZLF6 NmrA family protein n=51 Tax=Bacteria RepID=A7ZLF6_ECO24
          Length = 212

 Score =  101 bits (251), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 46/46 (100%), Positives = 46/46 (100%)

Query: 1  MKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKPYPTN 46
          MKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKPYPTN
Sbjct: 1  MKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKPYPTN 46


Searching..................................................done


Results from round 2


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

UniRef50_Q2EER5 Putative uncharacterized protein ymjC n=7 Tax=Es...   105   4e-22
UniRef50_A7ZLF6 NmrA family protein n=51 Tax=Bacteria RepID=A7ZL...   101   8e-21

Sequences not found previously or not previously below threshold:


CONVERGED!
>UniRef50_Q2EER5 Putative uncharacterized protein ymjC n=7 Tax=Escherichia coli
          RepID=YMJC_ECOLI
          Length = 60

 Score =  105 bits (263), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 60/60 (100%), Positives = 60/60 (100%)

Query: 1  MKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKPYPTNKMQTTSGKKVIQDR 60
          MKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKPYPTNKMQTTSGKKVIQDR
Sbjct: 1  MKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKPYPTNKMQTTSGKKVIQDR 60


>UniRef50_A7ZLF6 NmrA family protein n=51 Tax=Bacteria RepID=A7ZLF6_ECO24
          Length = 212

 Score =  101 bits (251), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 46/46 (100%), Positives = 46/46 (100%)

Query: 1  MKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKPYPTN 46
          MKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKPYPTN
Sbjct: 1  MKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKPYPTN 46


  Database: uniref50.fasta
    Posted date:  Mar 8, 2010 10:38 AM
  Number of letters in database: 1,040,396,356
  Number of sequences in database:  3,077,464
  
Lambda     K      H
   0.318    0.132    0.366 

Lambda     K      H
   0.267   0.0404    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 225,561,474
Number of Sequences: 3077464
Number of extensions: 6210194
Number of successful extensions: 15898
Number of sequences better than 1.0e-01: 2
Number of HSP's better than  0.1 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 15894
Number of HSP's gapped (non-prelim): 4
length of query: 60
length of database: 1,040,396,356
effective HSP length: 32
effective length of query: 28
effective length of database: 941,917,508
effective search space: 26373690224
effective search space used: 26373690224
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 87 (38.1 bits)
