Phyre 2 Results for Q2EER5

Phyre Home | Retrieve Phyre Job Id

Email | l.a.kelley@imperial.ac.uk
Description | Q2EER5
Date | Thu Jan 5 12:33:45 GMT 2012
Unique Job ID | 915ec2341283d93a

Summary |

Top model
Image coloured by rainbow N → C terminus
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Model (left) based on template c3qvoA_
Top template information
PDB header:structural genomics, unknown function Chain: A: PDB Molecule:nmra family protein; PDBTitle: structure of a rossmann-fold nad(p)-binding family protein from2 shigella flexneri.
Confidence and coverage
Confidence: | 95.7% | Coverage: | 75%
45 residues ( 75% of your sequence) have been modelled with 95.7% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Sequence |  | M | K | N | V | L | I | L | G | A | G | G | Q | I | A | R | H | V | I | N | Q | L | A | D | K | Q | T | I | K | Q | T | L | F | A | R | Q | P | A | K | I | H | K | P | Y | P | T | N | K | M | Q | T | T | S | G | K | K | V | I | Q | D | R
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? |  |  |  |  | ? |  |  |  |  |  | ? |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Sequence |
Secondary structure |
SS confidence |
Disorder |
Disorder confidence |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| c3qvoA_ |

### PDB 3qvo chain A

Region: 2 - 46
Aligned: 45
Modelled: 45
Confidence: 95.7%
Identity: 100%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:nmra family protein;
PDBTitle: structure of a rossmann-fold nad(p)-binding family protein from2 shigella flexneri.

Phyre2
2 |
| c3dhnA_ |

### PDB 3dhn chain A

Region: 1 - 24
Aligned: 24
Modelled: 24
Confidence: 95.5%
Identity: 21%
PDB header:isomerase, lyase
Chain: A: PDB Molecule:nad-dependent epimerase/dehydratase;
PDBTitle: crystal structure of the putative epimerase q89z24_bactn2 from bacteroides thetaiotaomicron. northeast structural3 genomics consortium target btr310.

Phyre2
3 |
| d1oc2a_ |

### PDB 1oc2 chain A

Region: 1 - 24
Aligned: 24
Modelled: 24
Confidence: 95.3%
Identity: 21%
Fold: NAD(P)-binding Rossmann-fold domains
Superfamily: NAD(P)-binding Rossmann-fold domains
Family: Tyrosine-dependent oxidoreductases

Phyre2
4 |
| c2q1wC_ |

### PDB 2q1w chain C

Region: 1 - 24
Aligned: 24
Modelled: 24
Confidence: 95.0%
Identity: 42%
PDB header:sugar binding protein
Chain: C: PDB Molecule:putative nucleotide sugar epimerase/ dehydratase;
PDBTitle: crystal structure of the bordetella bronchiseptica enzyme wbmh in2 complex with nad+

Phyre2
5 |
| d1hdoa_ |

### PDB 1hdo chain A

Region: 1 - 46
Aligned: 45
Modelled: 46
Confidence: 94.9%
Identity: 22%
Fold: NAD(P)-binding Rossmann-fold domains
Superfamily: NAD(P)-binding Rossmann-fold domains
Family: Tyrosine-dependent oxidoreductases

Phyre2
6 |
| d1bxka_ |

### PDB 1bxk chain A

Region: 1 - 24
Aligned: 24
Modelled: 24
Confidence: 94.8%
Identity: 25%
Fold: NAD(P)-binding Rossmann-fold domains
Superfamily: NAD(P)-binding Rossmann-fold domains
Family: Tyrosine-dependent oxidoreductases

Phyre2
7 |
| c3c1oA_ |

### PDB 3c1o chain A

Region: 1 - 24
Aligned: 24
Modelled: 24
Confidence: 94.2%
Identity: 21%
PDB header:oxidoreductase
Chain: A: PDB Molecule:eugenol synthase;
PDBTitle: the multiple phenylpropene synthases in both clarkia2 breweri and petunia hybrida represent two distinct lineages

Phyre2
8 |
| c3e48B_ |

### PDB 3e48 chain B

Region: 2 - 44
Aligned: 43
Modelled: 42
Confidence: 93.3%
Identity: 21%
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:putative nucleoside-diphosphate-sugar epimerase;
PDBTitle: crystal structure of a nucleoside-diphosphate-sugar epimerase2 (sav0421) from staphylococcus aureus, northeast structural genomics3 consortium target zr319

Phyre2
9 |
| c3gpiA_ |

### PDB 3gpi chain A

Region: 1 - 24
Aligned: 23
Modelled: 24
Confidence: 93.0%
Identity: 22%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:nad-dependent epimerase/dehydratase;
PDBTitle: structure of putative nad-dependent epimerase/dehydratase2 from methylobacillus flagellatus

Phyre2
10 |
| c2qx7A_ |

### PDB 2qx7 chain A

Region: 1 - 24
Aligned: 24
Modelled: 24
Confidence: 93.0%
Identity: 33%
PDB header:plant protein
Chain: A: PDB Molecule:eugenol synthase 1;
PDBTitle: structure of eugenol synthase from ocimum basilicum

Phyre2
11 |
| d2blla1 |

### PDB 2bll chain A domain 1

Region: 1 - 53
Aligned: 52
Modelled: 53
Confidence: 92.9%
Identity: 23%
Fold: NAD(P)-binding Rossmann-fold domains
Superfamily: NAD(P)-binding Rossmann-fold domains
Family: Tyrosine-dependent oxidoreductases

Phyre2
12 |
| c2vrcD_ |

### PDB 2vrc chain D

Region: 1 - 39
Aligned: 38
Modelled: 38
Confidence: 92.7%
Identity: 24%
PDB header:oxidoreductase
Chain: D: PDB Molecule:triphenylmethane reductase;
PDBTitle: crystal structure of the citrobacter sp. triphenylmethane2 reductase complexed with nadp(h)

Phyre2
13 |
| c3icpA_ |

### PDB 3icp chain A

Region: 1 - 24
Aligned: 23
Modelled: 24
Confidence: 92.6%
Identity: 26%
PDB header:isomerase
Chain: A: PDB Molecule:nad-dependent epimerase/dehydratase;
PDBTitle: crystal structure of udp-galactose 4-epimerase

Phyre2
14 |
| d1r6da_ |

### PDB 1r6d chain A

Region: 1 - 24
Aligned: 23
Modelled: 23
Confidence: 92.4%
Identity: 35%
Fold: NAD(P)-binding Rossmann-fold domains
Superfamily: NAD(P)-binding Rossmann-fold domains
Family: Tyrosine-dependent oxidoreductases

Phyre2
15 |
| c3rfxB_ |

### PDB 3rfx chain B

Region: 1 - 24
Aligned: 24
Modelled: 24
Confidence: 92.2%
Identity: 42%
PDB header:oxidoreductase
Chain: B: PDB Molecule:uronate dehydrogenase;
PDBTitle: crystal structure of uronate dehydrogenase from agrobacterium2 tumefaciens, y136a mutant complexed with nad

Phyre2
16 |
| d1udca_ |

### PDB 1udc chain A

Region: 1 - 24
Aligned: 23
Modelled: 24
Confidence: 91.8%
Identity: 39%
Fold: NAD(P)-binding Rossmann-fold domains
Superfamily: NAD(P)-binding Rossmann-fold domains
Family: Tyrosine-dependent oxidoreductases

Phyre2
17 |
| c2ggsB_ |

### PDB 2ggs chain B

Region: 1 - 24
Aligned: 23
Modelled: 24
Confidence: 91.7%
Identity: 35%
PDB header:oxidoreductase
Chain: B: PDB Molecule:273aa long hypothetical dtdp-4-dehydrorhamnose
PDBTitle: crystal structure of hypothetical dtdp-4-dehydrorhamnose2 reductase from sulfolobus tokodaii

Phyre2
18 |
| c2hunB_ |

### PDB 2hun chain B

Region: 1 - 24
Aligned: 24
Modelled: 24
Confidence: 91.5%
Identity: 29%
PDB header:lyase
Chain: B: PDB Molecule:336aa long hypothetical dtdp-glucose 4,6-dehydratase;
PDBTitle: crystal structure of hypothetical protein ph0414 from pyrococcus2 horikoshii ot3

Phyre2
19 |
| c3m2pD_ |

### PDB 3m2p chain D

Region: 1 - 24
Aligned: 23
Modelled: 24
Confidence: 91.4%
Identity: 17%
PDB header:isomerase
Chain: D: PDB Molecule:udp-n-acetylglucosamine 4-epimerase;
PDBTitle: the crystal structure of udp-n-acetylglucosamine 4-epimerase2 from bacillus cereus

Phyre2
20 |
| c2pk3B_ |

### PDB 2pk3 chain B

Region: 1 - 24
Aligned: 23
Modelled: 23
Confidence: 91.2%
Identity: 30%
PDB header:oxidoreductase
Chain: B: PDB Molecule:gdp-6-deoxy-d-lyxo-4-hexulose reductase;
PDBTitle: crystal structure of a gdp-4-keto-6-deoxy-d-mannose reductase

Phyre2
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Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | c3qvoA_ |
|  | 95.7 | 100 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:nmra family protein; PDBTitle: structure of a rossmann-fold nad(p)-binding family protein from2 shigella flexneri.
2 | c3dhnA_ |
|  | 95.5 | 21 | PDB header:isomerase, lyase Chain: A: PDB Molecule:nad-dependent epimerase/dehydratase; PDBTitle: crystal structure of the putative epimerase q89z24_bactn2 from bacteroides thetaiotaomicron. northeast structural3 genomics consortium target btr310.
3 | d1oc2a_ |
|  | 95.3 | 21 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases
4 | c2q1wC_ |
|  | 95.0 | 42 | PDB header:sugar binding protein Chain: C: PDB Molecule:putative nucleotide sugar epimerase/ dehydratase; PDBTitle: crystal structure of the bordetella bronchiseptica enzyme wbmh in2 complex with nad+
5 | d1hdoa_ |
|  | 94.9 | 22 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases
6 | d1bxka_ |
|  | 94.8 | 25 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases
7 | c3c1oA_ |
|  | 94.2 | 21 | PDB header:oxidoreductase Chain: A: PDB Molecule:eugenol synthase; PDBTitle: the multiple phenylpropene synthases in both clarkia2 breweri and petunia hybrida represent two distinct lineages
8 | c3e48B_ |
|  | 93.3 | 21 | PDB header:structural genomics, unknown function Chain: B: PDB Molecule:putative nucleoside-diphosphate-sugar epimerase; PDBTitle: crystal structure of a nucleoside-diphosphate-sugar epimerase2 (sav0421) from staphylococcus aureus, northeast structural genomics3 consortium target zr319
9 | c3gpiA_ |
|  | 93.0 | 22 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:nad-dependent epimerase/dehydratase; PDBTitle: structure of putative nad-dependent epimerase/dehydratase2 from methylobacillus flagellatus
10 | c2qx7A_ |
|  | 93.0 | 33 | PDB header:plant protein Chain: A: PDB Molecule:eugenol synthase 1; PDBTitle: structure of eugenol synthase from ocimum basilicum
11 | d2blla1 |
|  | 92.9 | 23 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases
12 | c2vrcD_ |
|  | 92.7 | 24 | PDB header:oxidoreductase Chain: D: PDB Molecule:triphenylmethane reductase; PDBTitle: crystal structure of the citrobacter sp. triphenylmethane2 reductase complexed with nadp(h)
13 | c3icpA_ |
|  | 92.6 | 26 | PDB header:isomerase Chain: A: PDB Molecule:nad-dependent epimerase/dehydratase; PDBTitle: crystal structure of udp-galactose 4-epimerase
14 | d1r6da_ |
|  | 92.4 | 35 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases
15 | c3rfxB_ |
|  | 92.2 | 42 | PDB header:oxidoreductase Chain: B: PDB Molecule:uronate dehydrogenase; PDBTitle: crystal structure of uronate dehydrogenase from agrobacterium2 tumefaciens, y136a mutant complexed with nad
16 | d1udca_ |
|  | 91.8 | 39 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases
17 | c2ggsB_ |
|  | 91.7 | 35 | PDB header:oxidoreductase Chain: B: PDB Molecule:273aa long hypothetical dtdp-4-dehydrorhamnose PDBTitle: crystal structure of hypothetical dtdp-4-dehydrorhamnose2 reductase from sulfolobus tokodaii
18 | c2hunB_ |
|  | 91.5 | 29 | PDB header:lyase Chain: B: PDB Molecule:336aa long hypothetical dtdp-glucose 4,6-dehydratase; PDBTitle: crystal structure of hypothetical protein ph0414 from pyrococcus2 horikoshii ot3
19 | c3m2pD_ |
|  | 91.4 | 17 | PDB header:isomerase Chain: D: PDB Molecule:udp-n-acetylglucosamine 4-epimerase; PDBTitle: the crystal structure of udp-n-acetylglucosamine 4-epimerase2 from bacillus cereus
20 | c2pk3B_ |
|  | 91.2 | 30 | PDB header:oxidoreductase Chain: B: PDB Molecule:gdp-6-deoxy-d-lyxo-4-hexulose reductase; PDBTitle: crystal structure of a gdp-4-keto-6-deoxy-d-mannose reductase
21 | d2c5aa1 |
| not modelled | 90.9 | 38 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases
22 | d2q46a1 |
| not modelled | 90.8 | 29 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases
23 | d2b69a1 |
| not modelled | 90.5 | 30 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases
24 | c2b69A_ |
| not modelled | 90.5 | 30 | PDB header:lyase Chain: A: PDB Molecule:udp-glucuronate decarboxylase 1; PDBTitle: crystal structure of human udp-glucoronic acid decarboxylase
25 | c2pzlB_ |
| not modelled | 90.5 | 26 | PDB header:sugar binding protein Chain: B: PDB Molecule:putative nucleotide sugar epimerase/ dehydratase; PDBTitle: crystal structure of the bordetella bronchiseptica enzyme2 wbmg in complex with nad and udp
26 | c2p5uC_ |
| not modelled | 90.3 | 35 | PDB header:isomerase Chain: C: PDB Molecule:udp-glucose 4-epimerase; PDBTitle: crystal structure of thermus thermophilus hb8 udp-glucose 4-2 epimerase complex with nad
27 | d1sb8a_ |
| not modelled | 90.0 | 30 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases
28 | d1n2sa_ |
| not modelled | 89.9 | 35 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases
29 | c3sc6F_ |
| not modelled | 89.9 | 29 | PDB header:oxidoreductase Chain: F: PDB Molecule:dtdp-4-dehydrorhamnose reductase; PDBTitle: 2.65 angstrom resolution crystal structure of dtdp-4-dehydrorhamnose2 reductase (rfbd) from bacillus anthracis str. ames in complex with3 nadp
30 | d2fmua1 |
| not modelled | 89.8 | 30 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases
31 | d1rpna_ |
| not modelled | 89.8 | 26 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases
32 | c3ay3C_ |
| not modelled | 89.5 | 21 | PDB header:oxidoreductase Chain: C: PDB Molecule:nad-dependent epimerase/dehydratase; PDBTitle: crystal structure of glucuronic acid dehydrogeanse from2 chromohalobacter salexigens
33 | c2x4gA_ |
| not modelled | 89.2 | 26 | PDB header:isomerase Chain: A: PDB Molecule:nucleoside-diphosphate-sugar epimerase; PDBTitle: crystal structure of pa4631, a nucleoside-diphosphate-sugar2 epimerase from pseudomonas aeruginosa
34 | d1kewa_ |
| not modelled | 89.2 | 35 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases
35 | c2zklA_ |
| not modelled | 88.9 | 30 | PDB header:isomerase Chain: A: PDB Molecule:capsular polysaccharide synthesis enzyme cap5f; PDBTitle: crystal structure of capsular polysaccharide assembling protein capf2 from staphylococcus aureus
36 | c2yy7B_ |
| not modelled | 88.7 | 35 | PDB header:oxidoreductase Chain: B: PDB Molecule:l-threonine dehydrogenase; PDBTitle: crystal structure of thermolabile l-threonine dehydrogenase from2 flavobacterium frigidimaris kuc-1
37 | d1db3a_ |
| not modelled | 88.5 | 35 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases
38 | d1hyea1 |
| not modelled | 88.4 | 39 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:LDH N-terminal domain-like
39 | d1npya1 |
| not modelled | 88.4 | 25 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Aminoacid dehydrogenase-like, C-terminal domain
40 | c3slgB_ |
| not modelled | 88.4 | 39 | PDB header:transferase Chain: B: PDB Molecule:pbgp3 protein; PDBTitle: crystal structure of pbgp3 protein from burkholderia pseudomallei
41 | d1z45a2 |
| not modelled | 88.0 | 35 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases
42 | d1wvga1 |
| not modelled | 87.9 | 22 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases
43 | c2exxB_ |
| not modelled | 87.8 | 26 | PDB header:unknown function Chain: B: PDB Molecule:hscarg protein; PDBTitle: crystal structure of hscarg from homo sapiens in complex with nadp
44 | c2rh8A_ |
| not modelled | 87.7 | 26 | PDB header:oxidoreductase Chain: A: PDB Molecule:anthocyanidin reductase; PDBTitle: structure of apo anthocyanidin reductase from vitis vinifera
45 | d1ek6a_ |
| not modelled | 87.6 | 33 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases
46 | c3lu1C_ |
| not modelled | 87.6 | 30 | PDB header:isomerase Chain: C: PDB Molecule:wbgu; PDBTitle: crystal structure analysis of wbgu: a udp-galnac 4-epimerase
47 | d1e6ua_ |
| not modelled | 87.6 | 26 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases
48 | c2q1uA_ |
| not modelled | 87.4 | 22 | PDB header:sugar binding protein Chain: A: PDB Molecule:putative nucleotide sugar epimerase/ dehydratase; PDBTitle: crystal structure of the bordetella bronchiseptica enzyme wbmf in2 complex with nad+ and udp
49 | d1xgka_ |
| not modelled | 86.9 | 26 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases
50 | d1rkxa_ |
| not modelled | 86.8 | 22 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases
51 | c2hrzA_ |
| not modelled | 86.5 | 26 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:nucleoside-diphosphate-sugar epimerase; PDBTitle: the crystal structure of the nucleoside-diphosphate-sugar epimerase2 from agrobacterium tumefaciens
52 | d1n7ha_ |
| not modelled | 86.3 | 35 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases
53 | d1gy8a_ |
| not modelled | 86.2 | 40 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases
54 | d2a35a1 |
| not modelled | 86.1 | 30 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases
55 | c2iodD_ |
| not modelled | 86.0 | 26 | PDB header:oxidoreductase Chain: D: PDB Molecule:dihydroflavonol 4-reductase; PDBTitle: binding of two substrate analogue molecules to2 dihydroflavonol-4-reductase alters the functional geometry3 of the catalytic site
56 | c2z1mC_ |
| not modelled | 85.8 | 35 | PDB header:lyase Chain: C: PDB Molecule:gdp-d-mannose dehydratase; PDBTitle: crystal structure of gdp-d-mannose dehydratase from aquifex aeolicus2 vf5
57 | c2ydyA_ |
| not modelled | 85.7 | 30 | PDB header:oxidoreductase Chain: A: PDB Molecule:methionine adenosyltransferase 2 subunit beta; PDBTitle: crystal structure of human s-adenosylmethionine synthetase2 2, beta subunit in orthorhombic crystal form
58 | d2bkaa1 |
| not modelled | 85.4 | 35 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases
59 | c3e8xA_ |
| not modelled | 85.0 | 39 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative nad-dependent epimerase/dehydratase; PDBTitle: putative nad-dependent epimerase/dehydratase from bacillus halodurans.
60 | c2c20D_ |
| not modelled | 84.7 | 36 | PDB header:isomerase Chain: D: PDB Molecule:udp-glucose 4-epimerase; PDBTitle: crystal structure of udp-glucose 4-epimerase
61 | d1p77a1 |
| not modelled | 84.3 | 40 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Aminoacid dehydrogenase-like, C-terminal domain
62 | c1t2aC_ |
| not modelled | 83.6 | 30 | PDB header:structural genomics,lyase Chain: C: PDB Molecule:gdp-mannose 4,6 dehydratase; PDBTitle: crystal structure of human gdp-d-mannose 4,6-dehydratase
63 | d1t2aa_ |
| not modelled | 83.6 | 30 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases
64 | c3l6eA_ |
| not modelled | 83.5 | 21 | PDB header:oxidoreductase Chain: A: PDB Molecule:oxidoreductase, short-chain dehydrogenase/reductase family; PDBTitle: crystal structure of putative short chain dehydrogenase/reductase2 family oxidoreductase from aeromonas hydrophila subsp. hydrophila3 atcc 7966
65 | c3eheB_ |
| not modelled | 82.0 | 29 | PDB header:isomerase Chain: B: PDB Molecule:udp-glucose 4-epimerase (gale-1); PDBTitle: crystal structure of udp-glucose 4 epimerase (gale-1) from2 archaeoglobus fulgidus
66 | c1npyA_ |
| not modelled | 81.9 | 25 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical shikimate 5-dehydrogenase-like PDBTitle: structure of shikimate 5-dehydrogenase-like protein hi0607
67 | d1y1pa1 |
| not modelled | 81.8 | 43 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases
68 | c1n7gB_ |
| not modelled | 81.4 | 35 | PDB header:lyase Chain: B: PDB Molecule:gdp-d-mannose-4,6-dehydratase; PDBTitle: crystal structure of the gdp-mannose 4,6-dehydratase2 ternary complex with nadph and gdp-rhamnose.
69 | c3i5mA_ |
| not modelled | 81.2 | 43 | PDB header:oxidoreductase Chain: A: PDB Molecule:putative leucoanthocyanidin reductase 1; PDBTitle: structure of the apo form of leucoanthocyanidin reductase from vitis2 vinifera
70 | c3nzoB_ |
| not modelled | 81.2 | 26 | PDB header:lyase Chain: B: PDB Molecule:udp-n-acetylglucosamine 4,6-dehydratase; PDBTitle: udp-n-acetylglucosamine 4,6-dehydratase from vibrio fischeri.
71 | c3enkB_ |
| not modelled | 80.8 | 26 | PDB header:isomerase Chain: B: PDB Molecule:udp-glucose 4-epimerase; PDBTitle: 1.9a crystal structure of udp-glucose 4-epimerase from2 burkholderia pseudomallei
72 | d2cmda1 |
| not modelled | 80.7 | 39 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:LDH N-terminal domain-like
73 | c3a1nB_ |
| not modelled | 80.5 | 38 | PDB header:oxidoreductase Chain: B: PDB Molecule:ndp-sugar epimerase; PDBTitle: crystal structure of l-threonine dehydrogenase from2 hyperthermophilic archaeon thermoplasma volcanium
74 | c1z7eC_ |
| not modelled | 80.0 | 38 | PDB header:hydrolase Chain: C: PDB Molecule:protein arna; PDBTitle: crystal structure of full length arna
75 | d1nvta1 |
| not modelled | 79.8 | 41 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Aminoacid dehydrogenase-like, C-terminal domain
76 | c2gasA_ |
| not modelled | 79.7 | 33 | PDB header:oxidoreductase Chain: A: PDB Molecule:isoflavone reductase; PDBTitle: crystal structure of isoflavone reductase
77 | d1qyca_ |
| not modelled | 79.6 | 39 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases
78 | c2gn9B_ |
| not modelled | 79.2 | 22 | PDB header:lyase Chain: B: PDB Molecule:udp-glcnac c6 dehydratase; PDBTitle: crystal structure of udp-glcnac inverting 4,6-dehydratase in complex2 with nadp and udp-glc
79 | d1vl0a_ |
| not modelled | 78.9 | 48 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases
80 | c3ew7A_ |
| not modelled | 78.8 | 19 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:lmo0794 protein; PDBTitle: crystal structure of the lmo0794 protein from listeria2 monocytogenes. northeast structural genomics consortium3 target lmr162.
81 | c3r6dA_ |
| not modelled | 78.5 | 43 | PDB header:lyase, isomerase Chain: A: PDB Molecule:nad-dependent epimerase/dehydratase; PDBTitle: crystal structure of nad-dependent epimerase/dehydratase from2 veillonella parvula dsm 2008 with cz-methylated lysine
82 | c3oh8A_ |
| not modelled | 78.1 | 30 | PDB header:isomerase Chain: A: PDB Molecule:nucleoside-diphosphate sugar epimerase (sula family); PDBTitle: crystal structure of the nucleoside-diphosphate sugar epimerase from2 corynebacterium glutamicum. northeast structural genomics consortium3 target cgr91
83 | d1eq2a_ |
| not modelled | 78.1 | 29 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases
84 | c2x86K_ |
| not modelled | 77.5 | 29 | PDB header:isomerase Chain: K: PDB Molecule:adp-l-glycero-d-manno-heptose-6-epimerase; PDBTitle: agme bound to adp-b-mannose
85 | c3iusB_ |
| not modelled | 77.4 | 32 | PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized conserved protein; PDBTitle: the structure of a functionally unknown conserved protein2 from silicibacter pomeroyi dss
86 | c2p4hX_ |
| not modelled | 77.1 | 22 | PDB header:plant protein Chain: X: PDB Molecule:vestitone reductase; PDBTitle: crystal structure of vestitone reductase from alfalfa2 (medicago sativa l.)
87 | c3dqpA_ |
| not modelled | 75.6 | 19 | PDB header:oxidoreductase Chain: A: PDB Molecule:oxidoreductase ylbe; PDBTitle: crystal structure of the oxidoreductase ylbe from2 lactococcus lactis, northeast structural genomics3 consortium target kr121.
88 | d1qyda_ |
| not modelled | 75.4 | 30 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases
89 | c3l77A_ |
| not modelled | 75.1 | 33 | PDB header:oxidoreductase Chain: A: PDB Molecule:short-chain alcohol dehydrogenase; PDBTitle: x-ray structure alcohol dehydrogenase from archaeon thermococcus2 sibiricus complexed with 5-hydroxy-nadp
90 | d1pqua1 |
| not modelled | 74.8 | 24 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
91 | c3h2sA_ |
| not modelled | 73.8 | 19 | PDB header:oxidoreductase Chain: A: PDB Molecule:putative nadh-flavin reductase; PDBTitle: crystal structure of the q03b84 protein from lactobacillus2 casei. northeast structural genomics consortium target3 lcr19.
92 | d1e5qa1 |
| not modelled | 73.3 | 41 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
93 | c3o8qB_ |
| not modelled | 71.7 | 42 | PDB header:oxidoreductase Chain: B: PDB Molecule:shikimate 5-dehydrogenase i alpha; PDBTitle: 1.45 angstrom resolution crystal structure of shikimate 5-2 dehydrogenase (aroe) from vibrio cholerae
94 | d1orra_ |
| not modelled | 70.2 | 19 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases
95 | c3pwzA_ |
| not modelled | 70.0 | 31 | PDB header:oxidoreductase Chain: A: PDB Molecule:shikimate dehydrogenase 3; PDBTitle: crystal structure of an ael1 enzyme from pseudomonas putida
96 | c2zcuA_ |
| not modelled | 68.8 | 40 | PDB header:oxidoreductase Chain: A: PDB Molecule:uncharacterized oxidoreductase ytfg; PDBTitle: crystal structure of a new type of nadph-dependent quinone2 oxidoreductase (qor2) from escherichia coli
97 | c1z45A_ |
| not modelled | 67.1 | 35 | PDB header:isomerase Chain: A: PDB Molecule:gal10 bifunctional protein; PDBTitle: crystal structure of the gal10 fusion protein galactose2 mutarotase/udp-galactose 4-epimerase from saccharomyces3 cerevisiae complexed with nad, udp-glucose, and galactose
98 | d1i24a_ |
| not modelled | 66.5 | 22 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases
99 | c3donA_ |
| not modelled | 66.5 | 28 | PDB header:oxidoreductase Chain: A: PDB Molecule:shikimate dehydrogenase; PDBTitle: crystal structure of shikimate dehydrogenase from staphylococcus2 epidermidis
100 | c3etjB_ |
| not modelled | 66.4 | 41 | PDB header:lyase Chain: B: PDB Molecule:phosphoribosylaminoimidazole carboxylase atpase PDBTitle: crystal structure e. coli purk in complex with mg, adp, and2 pi
101 | d1mlda1 |
| not modelled | 66.2 | 33 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:LDH N-terminal domain-like
102 | d1fjha_ |
| not modelled | 66.2 | 21 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases
103 | c2v6gA_ |
| not modelled | 65.1 | 27 | PDB header:oxidoreductase Chain: A: PDB Molecule:progesterone 5-beta-reductase; PDBTitle: structure of progesterone 5beta-reductase from digitalis2 lanata in complex with nadp
104 | c3i4fD_ |
| not modelled | 62.8 | 21 | PDB header:oxidoreductase Chain: D: PDB Molecule:3-oxoacyl-[acyl-carrier protein] reductase; PDBTitle: structure of putative 3-oxoacyl-reductase from bacillus thuringiensis
105 | c2hk8B_ |
| not modelled | 62.1 | 43 | PDB header:oxidoreductase Chain: B: PDB Molecule:shikimate dehydrogenase; PDBTitle: crystal structure of shikimate dehydrogenase from aquifex2 aeolicus at 2.35 angstrom resolution
106 | c1e5lA_ |
| not modelled | 61.9 | 41 | PDB header:oxidoreductase Chain: A: PDB Molecule:saccharopine reductase; PDBTitle: apo saccharopine reductase from magnaporthe grisea
107 | d1vi2a1 |
| not modelled | 61.7 | 28 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Aminoacid dehydrogenase-like, C-terminal domain
108 | c3tozA_ |
| not modelled | 61.3 | 31 | PDB header:oxidoreductase Chain: A: PDB Molecule:shikimate dehydrogenase; PDBTitle: 2.2 angstrom crystal structure of shikimate 5-dehydrogenase from2 listeria monocytogenes in complex with nad.
109 | c2z2vA_ |
| not modelled | 60.8 | 59 | PDB header:oxidoreductase Chain: A: PDB Molecule:hypothetical protein ph1688; PDBTitle: crystal structure of l-lysine dehydrogenase from2 hyperthermophilic archaeon pyrococcus horikoshii
110 | c1gpjA_ |
| not modelled | 59.0 | 28 | PDB header:reductase Chain: A: PDB Molecule:glutamyl-trna reductase; PDBTitle: glutamyl-trna reductase from methanopyrus kandleri
111 | c2eggA_ |
| not modelled | 57.1 | 31 | PDB header:oxidoreductase Chain: A: PDB Molecule:shikimate 5-dehydrogenase; PDBTitle: crystal structure of shikimate 5-dehydrogenase (aroe) from2 geobacillus kaustophilus
112 | c1nytC_ |
| not modelled | 56.2 | 29 | PDB header:oxidoreductase Chain: C: PDB Molecule:shikimate 5-dehydrogenase; PDBTitle: shikimate dehydrogenase aroe complexed with nadp+
113 | c3orfC_ |
| not modelled | 56.2 | 35 | PDB header:oxidoreductase Chain: C: PDB Molecule:dihydropteridine reductase; PDBTitle: crystal structure of dihydropteridine reductase from dictyostelium2 discoideum
114 | c2nloA_ |
| not modelled | 56.0 | 22 | PDB header:oxidoreductase Chain: A: PDB Molecule:shikimate dehydrogenase; PDBTitle: crystal structure of the quinate dehydrogenase from corynebacterium2 glutamicum
115 | c2axqA_ |
| not modelled | 54.9 | 43 | PDB header:oxidoreductase Chain: A: PDB Molecule:saccharopine dehydrogenase; PDBTitle: apo histidine-tagged saccharopine dehydrogenase (l-glu2 forming) from saccharomyces cerevisiae
116 | d1nyta1 |
| not modelled | 52.5 | 29 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Aminoacid dehydrogenase-like, C-terminal domain
117 | c3fbtB_ |
| not modelled | 52.2 | 33 | PDB header:oxidoreductase, lyase Chain: B: PDB Molecule:chorismate mutase and shikimate 5-dehydrogenase PDBTitle: crystal structure of a chorismate mutase/shikimate 5-2 dehydrogenase fusion protein from clostridium3 acetobutylicum
118 | c2jahB_ |
| not modelled | 51.9 | 35 | PDB header:oxidoreductase Chain: B: PDB Molecule:clavulanic acid dehydrogenase; PDBTitle: biochemical and structural analysis of the clavulanic acid2 dehydeogenase (cad) from streptomyces clavuligerus
119 | d1mjfa_ |
| not modelled | 51.7 | 50 | Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:Spermidine synthase
120 | d2b2ca1 |
| not modelled | 51.6 | 63 | Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:Spermidine synthase

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0