PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3donA_

Fold library id	PDB Header	Molecule	Title
c3donA_	PDB header: oxidoreductase	Chain: A: PDB Molecule: shikimate dehydrogenase;	PDBTitle: crystal structure of shikimate dehydrogenase from2 staphylococcus epidermidis

Links to external resources
Added to library: Sun Aug 29 01:52:08 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence M K F A V I G N P I S H S L S P L M H H A N F Q S L N L E N T Y E A I N V P V N Q F Q D I K K I I S E K S I D G F N V T I P H K E R I I P Y

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
T T
T T
G G G G G G T T
S
T T
T T T T G G G

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence L D D I N E Q A K S V G A V N T V L V K D G K W I G Y N T D G I G Y V N G L K Q I Y E G I E D A Y I L I L G A G G A S K G I A N E L Y K I V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T
T T
S T T G G G
S T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence R P T L T V A N R T M S R F N N W S L N I N K I N L S H A E S H L D E F D I I I N T T P D S V I S L N R L A S H T L V S D I V Y N P Y K T P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S
G G G G T T
S
T G G G
S
S S
T T
S S
S
S S S S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . .

Sequence I L I E A E Q R G N P I Y N G L D M F V H Q G A E S F K I W T N L E P D I K A M K N I V I Q K L K G E L L E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
T S S
T T
S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	M	K	F	A	V	I	G	N	P	I	S	H	S	L	S	P	L	M	H	H	A	N	F	Q	S	L	N	L	E	N	T	Y	E	A	I	N	V	P	V	N	Q	F	Q	D	I	K	K	I	I	S	E	K	S	I	D	G	F	N	V	T	I	P	H	K	E	R	I	I	P	Y
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								S	S		T	T														T	T												G	G	G	G	G	G								T	T		S						T	T		T	T	T	T	G	G	G
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	L	D	D	I	N	E	Q	A	K	S	V	G	A	V	N	T	V	L	V	K	D	G	K	W	I	G	Y	N	T	D	G	I	G	Y	V	N	G	L	K	Q	I	Y	E	G	I	E	D	A	Y	I	L	I	L	G	A	G	G	A	S	K	G	I	A	N	E	L	Y	K	I	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S										T									T	T																				S	T	T	G	G	G									S												T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	R	P	T	L	T	V	A	N	R	T	M	S	R	F	N	N	W	S	L	N	I	N	K	I	N	L	S	H	A	E	S	H	L	D	E	F	D	I	I	I	N	T	T	P	D	S	V	I	S	L	N	R	L	A	S	H	T	L	V	S	D	I	V	Y	N	P	Y	K	T	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S							S		G	G	G	G	T	T			S													T	G	G	G		S										S	S			T	T			S	S						S			S	S	S	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
Sequence	I	L	I	E	A	E	Q	R	G	N	P	I	Y	N	G	L	D	M	F	V	H	Q	G	A	E	S	F	K	I	W	T	N	L	E	P	D	I	K	A	M	K	N	I	V	I	Q	K	L	K	G	E	L	L	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								T	T						T																	S	S																T	T		S