Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP39356
DateThu Jan 5 11:59:46 GMT 2012
Unique Job ID88877637a7bae0f0

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c2w48D_
Top template information
PDB header:transcription
Chain: D: PDB Molecule:sorbitol operon regulator;
PDBTitle: crystal structure of the full-length sorbitol operon2 regulator sorc from klebsiella pneumoniae
Confidence and coverage
Confidence:100.0% Coverage: 92%
302 residues ( 92% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MDRDQTNSSLFNDDPVLHATWLYYQEGKSQTEVAAIMGVSRVTVVKYLQTARENGLVHIN
Secondary structure 



















SS confidence 



























































Disorder  ????????????














??






























Disorder confidence 



























































 
   .........70.........80.........90.........100.........110.........120
Sequence  LDVNVFGSIDAALQIRDKFNLQRVIIVPDGEHAGKRDDTKLMRTRLSRAGGMYLNQVIEN
Secondary structure 



















SS confidence 



























































Disorder 



????





















?????????




















Disorder confidence 



























































 
   .........130.........140.........150.........160.........170.........180
Sequence  GDVLGVAWGRTIHQMSKTMTPKSCKNVTVIQMLGSMPSQPDLTIIESSSQIAYKLSGRVA
Secondary structure 























SS confidence 



























































Disorder 




















???










?
????


















Disorder confidence 



























































 
   .........190.........200.........210.........220.........230.........240
Sequence  SLHVPAVVSSARLAMELQAEPIIRSNFDVLTRCTKAFFVVGNALDENPLIRVGVLNKKEM
Secondary structure 



















SS confidence 



























































Disorder 











































?














Disorder confidence 



























































 
   .........250.........260.........270.........280.........290.........300
Sequence  QTYRDLGAVGVICGRFYDKEGMPVVADVDQRILGISLAQLRQIERKIFLAGGERGYDATL
Secondary structure 





















SS confidence 



























































Disorder 



























































Disorder confidence 



























































 
   .........310.........320........
Sequence  GALLGGYVTDLIVDEGTAEFLLACELPH
Secondary structure 










SS confidence 



























Disorder 





















??????
Disorder confidence 



























 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 2w48 chain D

3D model

Region: 12 - 323
Aligned: 302
Modelled: 312
Confidence: 100.0%
Identity: 22%
PDB header:transcription
Chain: D: PDB Molecule:sorbitol operon regulator;
PDBTitle: crystal structure of the full-length sorbitol operon2 regulator sorc from klebsiella pneumoniae

Phyre2

PDB 3kv1 chain A

3D model

Region: 68 - 324
Aligned: 248
Modelled: 257
Confidence: 100.0%
Identity: 22%
PDB header:transcription
Chain: A: PDB Molecule:transcriptional repressor;
PDBTitle: crystal structure of putative sugar-binding domain of transcriptional2 repressor from vibrio fischeri

Phyre2

PDB 3nze chain B

3D model

Region: 63 - 324
Aligned: 257
Modelled: 262
Confidence: 100.0%
Identity: 22%
PDB header:transcription regulator
Chain: B: PDB Molecule:putative transcriptional regulator, sugar-binding family;
PDBTitle: the crystal structure of a domain of a possible sugar-binding2 transcriptional regulator from arthrobacter aurescens tc1.

Phyre2

PDB 2gnp chain A domain 1

3D model

Region: 63 - 325
Aligned: 259
Modelled: 263
Confidence: 100.0%
Identity: 19%
Fold: NagB/RpiA/CoA transferase-like
Superfamily: NagB/RpiA/CoA transferase-like
Family: SorC sugar-binding domain-like

Phyre2

PDB 3efb chain A domain 1

3D model

Region: 67 - 323
Aligned: 243
Modelled: 257
Confidence: 100.0%
Identity: 22%
Fold: NagB/RpiA/CoA transferase-like
Superfamily: NagB/RpiA/CoA transferase-like
Family: SorC sugar-binding domain-like

Phyre2

PDB 2okg chain A domain 1

3D model

Region: 64 - 322
Aligned: 244
Modelled: 259
Confidence: 100.0%
Identity: 20%
Fold: NagB/RpiA/CoA transferase-like
Superfamily: NagB/RpiA/CoA transferase-like
Family: SorC sugar-binding domain-like

Phyre2

PDB 2o0m chain A domain 1

3D model

Region: 70 - 323
Aligned: 242
Modelled: 254
Confidence: 100.0%
Identity: 23%
Fold: NagB/RpiA/CoA transferase-like
Superfamily: NagB/RpiA/CoA transferase-like
Family: SorC sugar-binding domain-like

Phyre2

PDB 2o0m chain A

3D model

Region: 70 - 323
Aligned: 242
Modelled: 254
Confidence: 100.0%
Identity: 23%
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator, sorc family;
PDBTitle: the crystal structure of the putative sorc family transcriptional2 regulator from enterococcus faecalis

Phyre2

PDB 2r5f chain A domain 1

3D model

Region: 68 - 321
Aligned: 213
Modelled: 236
Confidence: 100.0%
Identity: 32%
Fold: NagB/RpiA/CoA transferase-like
Superfamily: NagB/RpiA/CoA transferase-like
Family: SorC sugar-binding domain-like

Phyre2

PDB 2bkx chain B

3D model

Region: 83 - 318
Aligned: 213
Modelled: 223
Confidence: 100.0%
Identity: 14%
PDB header:hydrolase
Chain: B: PDB Molecule:glucosamine-6-phosphate deaminase;
PDBTitle: structure and kinetics of a monomeric glucosamine-6-2 phosphate deaminase: missing link of the nagb superfamily

Phyre2

PDB 2ri0 chain B

3D model

Region: 83 - 321
Aligned: 215
Modelled: 226
Confidence: 100.0%
Identity: 18%
PDB header:hydrolase
Chain: B: PDB Molecule:glucosamine-6-phosphate deaminase;
PDBTitle: crystal structure of glucosamine 6-phosphate deaminase (nagb) from s.2 mutans

Phyre2

PDB 1ne7 chain A

3D model

Region: 83 - 321
Aligned: 208
Modelled: 212
Confidence: 99.5%
Identity: 17%
Fold: NagB/RpiA/CoA transferase-like
Superfamily: NagB/RpiA/CoA transferase-like
Family: NagB-like

Phyre2

PDB 3hn6 chain D

3D model

Region: 97 - 321
Aligned: 207
Modelled: 211
Confidence: 99.4%
Identity: 14%
PDB header:isomerase
Chain: D: PDB Molecule:glucosamine-6-phosphate deaminase;
PDBTitle: crystal structure of glucosamine-6-phosphate deaminase from borrelia2 burgdorferi

Phyre2

PDB 1fsf chain A

3D model

Region: 96 - 321
Aligned: 208
Modelled: 212
Confidence: 99.3%
Identity: 19%
Fold: NagB/RpiA/CoA transferase-like
Superfamily: NagB/RpiA/CoA transferase-like
Family: NagB-like

Phyre2

PDB 3e15 chain D

3D model

Region: 67 - 309
Aligned: 223
Modelled: 232
Confidence: 99.3%
Identity: 17%
PDB header:hydrolase
Chain: D: PDB Molecule:glucose-6-phosphate 1-dehydrogenase;
PDBTitle: 6-phosphogluconolactonase from plasmodium vivax

Phyre2

PDB 3nwp chain A

3D model

Region: 96 - 306
Aligned: 193
Modelled: 211
Confidence: 99.1%
Identity: 12%
PDB header:hydrolase
Chain: A: PDB Molecule:6-phosphogluconolactonase;
PDBTitle: crystal structure of a 6-phosphogluconolactonase (sbal_2240) from2 shewanella baltica os155 at 1.40 a resolution

Phyre2

PDB 3ico chain A

3D model

Region: 96 - 321
Aligned: 210
Modelled: 226
Confidence: 99.1%
Identity: 10%
PDB header:hydrolase
Chain: A: PDB Molecule:6-phosphogluconolactonase;
PDBTitle: crystal structure of 6-phosphogluconolactonase from2 mycobacterium tuberculosis

Phyre2

PDB 3oc6 chain A

3D model

Region: 96 - 321
Aligned: 204
Modelled: 205
Confidence: 99.0%
Identity: 15%
PDB header:hydrolase
Chain: A: PDB Molecule:6-phosphogluconolactonase;
PDBTitle: crystal structure of 6-phosphogluconolactonase from mycobacterium2 smegmatis, apo form

Phyre2

PDB 3lhi chain A

3D model

Region: 96 - 305
Aligned: 195
Modelled: 210
Confidence: 99.0%
Identity: 12%
PDB header:hydrolase
Chain: A: PDB Molecule:putative 6-phosphogluconolactonase;
PDBTitle: crystal structure of putative 6-2 phosphogluconolactonase(yp_207848.1) from neisseria3 gonorrhoeae fa 1090 at 1.33 a resolution

Phyre2

PDB 1vl1 chain A

3D model

Region: 96 - 305
Aligned: 188
Modelled: 210
Confidence: 99.0%
Identity: 12%
Fold: NagB/RpiA/CoA transferase-like
Superfamily: NagB/RpiA/CoA transferase-like
Family: NagB-like

Phyre2

PDB 2l4a chain A

3D model

Region: 1 - 58
Aligned: 58
Modelled: 58
Confidence: 96.5%
Identity: 12%
PDB header:dna binding protein
Chain: A: PDB Molecule:leucine responsive regulatory protein;
PDBTitle: nmr structure of the dna-binding domain of e.coli lrp

Phyre2
1

c2w48D_
2

c3kv1A_
3

c3nzeB_
4

d2gnpa1
5

d3efba1
6

d2okga1
7

d2o0ma1
8

c2o0mA_
9

d2r5fa1
10

c2bkxB_
11

c2ri0B_
12

d1ne7a_
13

c3hn6D_
14

d1fsfa_
15

c3e15D_
16

c3nwpA_
17

c3icoA_
18

c3oc6A_
19

c3lhiA_
20

d1vl1a_
21



22



23



24



25



26



27



28



29



30



31



32



33



34



35



36



37



38



39



40



41



42



43



44



45



46



47



48



49



50



51



52



53



54



55



56



57



58



59



60



61



62



63



64



65



66



67



68



69



70



71



72



73



74



75



76



77



78



79



80



81



82



83



84



85



86



87



88



89



90



91



92



93



94



95



96



97



98



99



100



101



102



103



104



105



106



107

c2l4aA_
108



109



110



111



112



113



114



115



116



117



118



119



120



121



122



123



124



125



126



127



128



129



130



131



132



133



134



135



136



137



138



139



140



141



142



143



144



145



146



147



148



149



150



151



152



153



154



155



156



157



158



159



160



161



162



163



164



165



166



167



168



169



170



171



172



173



174



175



176



177



178



179



180



181



182



183



184



185



186



187



188



189



190



191



192



193



194



195



196



197



198



199



200



201



202



203



204



205



206



207



208



209



210



211



212



213



214



215



216



217



218



219



220



221



222



223



224



225



226



227



228



229



230



231



232



233



234



235



236



237



238



239



240



241



242



243



244



245



246



247



248



249



250



251



252



253



254



255



256



257



258



259



260



261



262



263



264



265



266



267



268



269



270



271



272



273



274



275



276



277



278



279



280



281



282



283



284



285



286



287



288



289



290



291



292



293



294



295



296



297



298



299



300



301



302



303



304



305



306



307



308



309



310



311



312



313



314



315



316



317



318



319



320



321



322



323



324



325



326



327



328



329



330



331



332



333



334



335



336



337



338



339



340



341



342



343



344



345



346



347



348



349



350



351



352



353



354



355



356



357



358



359



360



361



362



363



364



365



366



367



368



369



370



371



372



373



374



375



376



377



378



379



380



381



382



383



384



385



386



387



388



389



390



391



392



393



394



395



396



397



398



399



400



401



402



403



404



405



406



407



408



409



410



411



412



413



414



415



416



417



418



419



420



421



422



423



424



425



426



427



428



429



430



431



432



433



434



435



436



437



438



439



440



441



442



443



444



445



446



447



448



449



450



451



452



453



454



455



456



457



458



459



460



461



462



463



464



465



466



467



468



469



470



471



472



473



474



475



476



477



478



479



480



481



482



483



484



485



486



487



488



489



490



491



492



493



494



495



496



497



498



499






Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2w48D_



100.0 22 PDB header:transcription
Chain: D: PDB Molecule:sorbitol operon regulator;
PDBTitle: crystal structure of the full-length sorbitol operon2 regulator sorc from klebsiella pneumoniae
2c3kv1A_



100.0 22 PDB header:transcription
Chain: A: PDB Molecule:transcriptional repressor;
PDBTitle: crystal structure of putative sugar-binding domain of transcriptional2 repressor from vibrio fischeri
3c3nzeB_



100.0 22 PDB header:transcription regulator
Chain: B: PDB Molecule:putative transcriptional regulator, sugar-binding family;
PDBTitle: the crystal structure of a domain of a possible sugar-binding2 transcriptional regulator from arthrobacter aurescens tc1.
4d2gnpa1



100.0 19 Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:SorC sugar-binding domain-like
5d3efba1



100.0 22 Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:SorC sugar-binding domain-like
6d2okga1



100.0 20 Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:SorC sugar-binding domain-like
7d2o0ma1



100.0 23 Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:SorC sugar-binding domain-like
8c2o0mA_



100.0 23 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator, sorc family;
PDBTitle: the crystal structure of the putative sorc family transcriptional2 regulator from enterococcus faecalis
9d2r5fa1



100.0 32 Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:SorC sugar-binding domain-like
10c2bkxB_



100.0 14 PDB header:hydrolase
Chain: B: PDB Molecule:glucosamine-6-phosphate deaminase;
PDBTitle: structure and kinetics of a monomeric glucosamine-6-2 phosphate deaminase: missing link of the nagb superfamily
11c2ri0B_



100.0 18 PDB header:hydrolase
Chain: B: PDB Molecule:glucosamine-6-phosphate deaminase;
PDBTitle: crystal structure of glucosamine 6-phosphate deaminase (nagb) from s.2 mutans
12d1ne7a_



99.5 17 Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:NagB-like
13c3hn6D_



99.4 14 PDB header:isomerase
Chain: D: PDB Molecule:glucosamine-6-phosphate deaminase;
PDBTitle: crystal structure of glucosamine-6-phosphate deaminase from borrelia2 burgdorferi
14d1fsfa_



99.3 19 Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:NagB-like
15c3e15D_



99.3 17 PDB header:hydrolase
Chain: D: PDB Molecule:glucose-6-phosphate 1-dehydrogenase;
PDBTitle: 6-phosphogluconolactonase from plasmodium vivax
16c3nwpA_



99.1 12 PDB header:hydrolase
Chain: A: PDB Molecule:6-phosphogluconolactonase;
PDBTitle: crystal structure of a 6-phosphogluconolactonase (sbal_2240) from2 shewanella baltica os155 at 1.40 a resolution
17c3icoA_



99.1 10 PDB header:hydrolase
Chain: A: PDB Molecule:6-phosphogluconolactonase;
PDBTitle: crystal structure of 6-phosphogluconolactonase from2 mycobacterium tuberculosis
18c3oc6A_



99.0 15 PDB header:hydrolase
Chain: A: PDB Molecule:6-phosphogluconolactonase;
PDBTitle: crystal structure of 6-phosphogluconolactonase from mycobacterium2 smegmatis, apo form
19c3lhiA_



99.0 12 PDB header:hydrolase
Chain: A: PDB Molecule:putative 6-phosphogluconolactonase;
PDBTitle: crystal structure of putative 6-2 phosphogluconolactonase(yp_207848.1) from neisseria3 gonorrhoeae fa 1090 at 1.33 a resolution
20d1vl1a_



99.0 12 Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:NagB-like
21c3lwdA_



not modelled 99.0 12 PDB header:hydrolase
Chain: A: PDB Molecule:6-phosphogluconolactonase;
PDBTitle: crystal structure of putative 6-phosphogluconolactonase (yp_574786.1)2 from chromohalobacter salexigens dsm 3043 at 1.88 a resolution
22c2j0eA_



not modelled 99.0 11 PDB header:hydrolase
Chain: A: PDB Molecule:6-phosphogluconolactonase;
PDBTitle: three dimensional structure and catalytic mechanism of 6-2 phosphogluconolactonase from trypanosoma brucei
23c1y89B_



not modelled 99.0 13 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:devb protein;
PDBTitle: crystal structure of devb protein
24c3cssA_



not modelled 99.0 11 PDB header:hydrolase
Chain: A: PDB Molecule:6-phosphogluconolactonase;
PDBTitle: crystal structure of 6-phosphogluconolactonase from leishmania2 guyanensis
25c1pbtA_



not modelled 99.0 11 PDB header:hydrolase, oxidoreductase
Chain: A: PDB Molecule:6-phosphogluconolactonase;
PDBTitle: the crystal structure of tm1154, oxidoreductase, sol/devb2 family from thermotoga maritima
26c3u7jA_



not modelled 97.9 18 PDB header:isomerase
Chain: A: PDB Molecule:ribose-5-phosphate isomerase a;
PDBTitle: crystal structure of ribose-5-phosphate isomerase a from burkholderia2 thailandensis
27c1rp3G_



not modelled 97.5 27 PDB header:transcription
Chain: G: PDB Molecule:rna polymerase sigma factor sigma-28 (flia);
PDBTitle: cocrystal structure of the flagellar sigma/anti-sigma2 complex, sigma-28/flgm
28c3ctaA_



not modelled 97.5 15 PDB header:transferase
Chain: A: PDB Molecule:riboflavin kinase;
PDBTitle: crystal structure of riboflavin kinase from thermoplasma2 acidophilum
29d1i5za1



not modelled 97.5 27 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:CAP C-terminal domain-like
30d2bgca1



not modelled 97.5 9 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:CAP C-terminal domain-like
31d1s7oa_



not modelled 97.4 31 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors
Family:YlxM/p13-like
32d2oz6a1



not modelled 97.4 36 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:CAP C-terminal domain-like
33c3kwmC_



not modelled 97.4 22 PDB header:isomerase
Chain: C: PDB Molecule:ribose-5-phosphate isomerase a;
PDBTitle: crystal structure of ribose-5-isomerase a
34c3d0sA_



not modelled 97.3 32 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulatory protein;
PDBTitle: camp receptor protein from m.tuberculosis, camp-free form
35d1xsva_



not modelled 97.3 28 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors
Family:YlxM/p13-like
36d2gaua1



not modelled 97.3 15 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:CAP C-terminal domain-like
37d2h6ca1



not modelled 97.2 26 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:CAP C-terminal domain-like
38c3kccA_



not modelled 97.2 27 PDB header:transcription
Chain: A: PDB Molecule:catabolite gene activator;
PDBTitle: crystal structure of d138l mutant of catabolite gene activator protein
39d1k78a1



not modelled 97.2 22 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Paired domain
40c2gauA_



not modelled 97.2 15 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator, crp/fnr family;
PDBTitle: crystal structure of transcriptional regulator, crp/fnr family from2 porphyromonas gingivalis (apc80792), structural genomics, mcsg
41c2oz6A_



not modelled 97.2 36 PDB header:dna binding protein
Chain: A: PDB Molecule:virulence factor regulator;
PDBTitle: crystal structure of virulence factor regulator from pseudomonas2 aeruginosa in complex with camp
42d2coha1



not modelled 97.2 27 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:CAP C-terminal domain-like
43c1zreB_



not modelled 97.1 27 PDB header:gene regulation/dna
Chain: B: PDB Molecule:catabolite gene activator;
PDBTitle: 4 crystal structures of cap-dna with all base-pair2 substitutions at position 6, cap-[6g;17c]icap38 dna
44d6paxa1



not modelled 97.1 22 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Paired domain
45d2d1ha1



not modelled 97.1 23 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:TrmB-like
46d1ft9a1



not modelled 97.1 24 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:CAP C-terminal domain-like
47c2bgcA_



not modelled 97.1 19 PDB header:transcription
Chain: A: PDB Molecule:prfa;
PDBTitle: prfa-g145s, a constitutive active mutant of the2 transcriptional regulator in l.monocytogenes
48c6paxA_



not modelled 97.1 22 PDB header:gene regulation/dna
Chain: A: PDB Molecule:homeobox protein pax-6;
PDBTitle: crystal structure of the human pax-6 paired domain-dna2 complex reveals a general model for pax protein-dna3 interactions
49c3dv8A_



not modelled 97.1 21 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator, crp/fnr family;
PDBTitle: crystal structure of a putative transcriptional regulator of the2 crp/fnr family (eubrec_1222) from eubacterium rectale atcc 33656 at3 2.55 a resolution
50d3e5ua1



not modelled 97.1 28 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:CAP C-terminal domain-like
51c3e6dA_



not modelled 97.1 26 PDB header:transcription regulation
Chain: A: PDB Molecule:cyclic nucleotide-binding protein;
PDBTitle: crystal structure of cprk c200s
52c1u78A_



not modelled 97.0 18 PDB header:dna binding protein/dna
Chain: A: PDB Molecule:transposable element tc3 transposase;
PDBTitle: structure of the bipartite dna-binding domain of tc32 transposase bound to transposon dna
53c2o8xA_



not modelled 97.0 27 PDB header:transcription
Chain: A: PDB Molecule:probable rna polymerase sigma-c factor;
PDBTitle: crystal structure of the "-35 element" promoter recognition domain of2 mycobacterium tuberculosis sigc
54d1pdnc_



not modelled 97.0 21 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Paired domain
55c1ft9A_



not modelled 97.0 24 PDB header:transcription
Chain: A: PDB Molecule:carbon monoxide oxidation system transcription
PDBTitle: structure of the reduced (feii) co-sensing protein from r.2 rubrum
56c3hheA_



not modelled 97.0 20 PDB header:isomerase
Chain: A: PDB Molecule:ribose-5-phosphate isomerase a;
PDBTitle: crystal structure of ribose-5-phosphate isomerase a from bartonella2 henselae
57c1zybA_



not modelled 97.0 21 PDB header:transcription regulator
Chain: A: PDB Molecule:transcription regulator, crp family;
PDBTitle: crystal structure of transcription regulator from bacteroides2 thetaiotaomicron vpi-5482 at 2.15 a resolution
58d1ku7a_



not modelled 97.0 19 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors
Family:Sigma4 domain
59d1sfxa_



not modelled 97.0 17 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:TrmB-like
60d1z05a1



not modelled 97.0 11 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:ROK associated domain
61c3hugA_



not modelled 96.9 25 PDB header:transcription/membrane protein
Chain: A: PDB Molecule:rna polymerase sigma factor;
PDBTitle: crystal structure of mycobacterium tuberculosis anti-sigma factor rsla2 in complex with -35 promoter binding domain of sigl
62c2zcwA_



not modelled 96.9 27 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator, fnr/crp family;
PDBTitle: crystal structure of ttha1359, a transcriptional regulator,2 crp/fnr family from thermus thermophilus hb8
63c3tgnA_



not modelled 96.9 24 PDB header:transcription
Chain: A: PDB Molecule:adc operon repressor adcr;
PDBTitle: crystal structure of the zinc-dependent marr family transcriptional2 regulator adcr in the zn(ii)-bound state
64c2qwwB_



not modelled 96.9 11 PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulator, marr family;
PDBTitle: crystal structure of multiple antibiotic-resistance repressor (marr)2 (yp_013417.1) from listeria monocytogenes 4b f2365 at 2.07 a3 resolution
65d1rp3a2



not modelled 96.9 27 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors
Family:Sigma4 domain
66c3iwzB_



not modelled 96.9 29 PDB header:transcription
Chain: B: PDB Molecule:catabolite activation-like protein;
PDBTitle: the c-di-gmp responsive global regulator clp links cell-cell signaling2 to virulence gene expression in xanthomonas campestris
67c1or7A_



not modelled 96.9 39 PDB header:transcription
Chain: A: PDB Molecule:rna polymerase sigma-e factor;
PDBTitle: crystal structure of escherichia coli sigmae with the cytoplasmic2 domain of its anti-sigma rsea
68c3g3zA_



not modelled 96.9 14 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator, marr family;
PDBTitle: the structure of nmb1585, a marr family regulator from neisseria2 meningitidis
69d1ku9a_



not modelled 96.9 20 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:DNA-binding protein Mj223
70c1zx4B_



not modelled 96.9 33 PDB header:translation
Chain: B: PDB Molecule:plasmid partition par b protein;
PDBTitle: structure of parb bound to dna
71c3fx3A_



not modelled 96.9 11 PDB header:camp-binding protein
Chain: A: PDB Molecule:cyclic nucleotide-binding protein;
PDBTitle: structure of a putative camp-binding regulatory protein from2 silicibacter pomeroyi dss-3
72c3mzyA_



not modelled 96.9 22 PDB header:rna binding protein
Chain: A: PDB Molecule:rna polymerase sigma-h factor;
PDBTitle: the crystal structure of the rna polymerase sigma-h factor from2 fusobacterium nucleatum to 2.5a
73c2it0A_



not modelled 96.8 14 PDB header:transcription/dna
Chain: A: PDB Molecule:iron-dependent repressor ider;
PDBTitle: crystal structure of a two-domain ider-dna complex crystal2 form ii
74c2f8mB_



not modelled 96.8 18 PDB header:isomerase
Chain: B: PDB Molecule:ribose 5-phosphate isomerase;
PDBTitle: ribose 5-phosphate isomerase from plasmodium falciparum
75c2wteB_



not modelled 96.8 19 PDB header:antiviral protein
Chain: B: PDB Molecule:csa3;
PDBTitle: the structure of the crispr-associated protein, csa3, from2 sulfolobus solfataricus at 1.8 angstrom resolution.
76c3la2A_



not modelled 96.8 32 PDB header:transcription
Chain: A: PDB Molecule:global nitrogen regulator;
PDBTitle: crystal structure of ntca in complex with 2-oxoglutarate
77d1ttya_



not modelled 96.8 19 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors
Family:Sigma4 domain
78d2fxaa1



not modelled 96.8 16 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
79c2fxaB_



not modelled 96.8 19 PDB header:transcription
Chain: B: PDB Molecule:protease production regulatory protein hpr;
PDBTitle: structure of the protease production regulatory protein hpr from2 bacillus subtilis.
80c2h09A_



not modelled 96.7 28 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator mntr;
PDBTitle: crystal structure of diphtheria toxin repressor like protein2 from e. coli
81c1f5tA_



not modelled 96.7 16 PDB header:transcription/dna
Chain: A: PDB Molecule:diphtheria toxin repressor;
PDBTitle: diphtheria tox repressor (c102d mutant) complexed with2 nickel and dtxr consensus binding sequence
82c1m0sA_



not modelled 96.7 16 PDB header:isomerase
Chain: A: PDB Molecule:ribose-5-phosphate isomerase a;
PDBTitle: northeast structural genomics consortium (nesg id ir21)
83d3ctaa1



not modelled 96.7 16 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
84d1or7a1



not modelled 96.7 38 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors
Family:Sigma4 domain
85d2etha1



not modelled 96.7 16 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
86c3e97A_



not modelled 96.7 18 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, crp/fnr family;
PDBTitle: crystal structure of transcriptional regulator of crp/fnr2 family (yp_604437.1) from deinococcus geothermalis dsm3 11300 at 1.86 a resolution
87c3nrvC_



not modelled 96.7 14 PDB header:transcription regulator
Chain: C: PDB Molecule:putative transcriptional regulator (marr/emrr family);
PDBTitle: crystal structure of marr/emrr family transcriptional regulator from2 acinetobacter sp. adp1
88c3bddD_



not modelled 96.7 18 PDB header:transcription
Chain: D: PDB Molecule:regulatory protein marr;
PDBTitle: crystal structure of a putative multiple antibiotic-resistance2 repressor (ssu05_1136) from streptococcus suis 89/1591 at 2.20 a3 resolution
89c1lkzB_



not modelled 96.7 15 PDB header:isomerase
Chain: B: PDB Molecule:ribose 5-phosphate isomerase a;
PDBTitle: crystal structure of d-ribose-5-phosphate isomerase (rpia)2 from escherichia coli.
90c1z05A_



not modelled 96.6 11 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator, rok family;
PDBTitle: crystal structure of the rok family transcriptional regulator, homolog2 of e.coli mlc protein.
91c1lk5C_



not modelled 96.6 23 PDB header:isomerase
Chain: C: PDB Molecule:d-ribose-5-phosphate isomerase;
PDBTitle: structure of the d-ribose-5-phosphate isomerase from2 pyrococcus horikoshii
92d1ku3a_



not modelled 96.6 19 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors
Family:Sigma4 domain
93c2nnnB_



not modelled 96.6 13 PDB header:transcription
Chain: B: PDB Molecule:probable transcriptional regulator;
PDBTitle: crystal structure of probable transcriptional regulator from2 pseudomonas aeruginosa
94d1z6ra1



not modelled 96.6 14 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:ROK associated domain
95c3nqoB_



not modelled 96.6 14 PDB header:transcription
Chain: B: PDB Molecule:marr-family transcriptional regulator;
PDBTitle: crystal structure of a marr family transcriptional regulator (cd1569)2 from clostridium difficile 630 at 2.20 a resolution
96c3deuB_



not modelled 96.6 20 PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulator slya;
PDBTitle: crystal structure of transcription regulatory protein slya2 from salmonella typhimurium in complex with salicylate3 ligands
97c3r0aB_



not modelled 96.6 12 PDB header:transcription regulator
Chain: B: PDB Molecule:putative transcriptional regulator;
PDBTitle: possible transcriptional regulator from methanosarcina mazei go1 (gi2 21227196)
98c2fa5B_



not modelled 96.6 25 PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulator marr/emrr family;
PDBTitle: the crystal structure of an unliganded multiple antibiotic-2 resistance repressor (marr) from xanthomonas campestris
99d1lj9a_



not modelled 96.6 19 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
100d3broa1



not modelled 96.6 10 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
101c2zdbA_



not modelled 96.5 30 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, crp family;
PDBTitle: crystal structure of tthb099, a transcriptional regulator crp family2 from thermus thermophilus hb8
102c2fmyB_



not modelled 96.5 28 PDB header:dna binding protein
Chain: B: PDB Molecule:carbon monoxide oxidation system transcription regulator
PDBTitle: co-dependent transcription factor cooa from carboxydothermus2 hydrogenoformans (imidazole-bound form)
103c2nyxB_



not modelled 96.5 10 PDB header:transcription
Chain: B: PDB Molecule:probable transcriptional regulatory protein, rv1404;
PDBTitle: crystal structure of rv1404 from mycobacterium tuberculosis
104c2ev5B_



not modelled 96.5 15 PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulator mntr;
PDBTitle: bacillus subtilis manganese transport regulator (mntr)2 bound to calcium
105c3bpxB_



not modelled 96.5 21 PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulator;
PDBTitle: crystal structure of marr
106c3dkwB_



not modelled 96.5 16 PDB header:transcription regulator
Chain: B: PDB Molecule:dnr protein;
PDBTitle: crystal structure of dnr from pseudomonas aeruginosa.
107c2l4aA_



96.5 12 PDB header:dna binding protein
Chain: A: PDB Molecule:leucine responsive regulatory protein;
PDBTitle: nmr structure of the dna-binding domain of e.coli lrp
108c2x4hA_



not modelled 96.4 24 PDB header:transcription
Chain: A: PDB Molecule:hypothetical protein sso2273;
PDBTitle: crystal structure of the hypothetical protein sso2273 from2 sulfolobus solfataricus
109c1z6rC_



not modelled 96.4 14 PDB header:transcription
Chain: C: PDB Molecule:mlc protein;
PDBTitle: crystal structure of mlc from escherichia coli
110c2rdpA_



not modelled 96.4 20 PDB header:transcription
Chain: A: PDB Molecule:putative transcriptional regulator marr;
PDBTitle: the structure of a marr family protein from bacillus2 stearothermophilus
111c3k0lA_



not modelled 96.4 19 PDB header:transcription regulator
Chain: A: PDB Molecule:repressor protein;
PDBTitle: crystal structure of putative marr family transcriptional2 regulator from acinetobacter sp. adp
112c3l7oB_



not modelled 96.4 18 PDB header:isomerase
Chain: B: PDB Molecule:ribose-5-phosphate isomerase a;
PDBTitle: crystal structure of ribose-5-phosphate isomerase a from streptococcus2 mutans ua159
113c2pexA_



not modelled 96.4 22 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator ohrr;
PDBTitle: structure of reduced c22s ohrr from xanthamonas campestris
114d1lnwa_



not modelled 96.3 8 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
115d2p7vb1



not modelled 96.3 14 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors
Family:Sigma4 domain
116d2hr3a1



not modelled 96.3 18 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
117c2gxgA_



not modelled 96.3 16 PDB header:transcription
Chain: A: PDB Molecule:146aa long hypothetical transcriptional regulator;
PDBTitle: crystal structure of emrr homolog from hyperthermophilic archaea2 sulfolobus tokodaii strain7
118d1s3ja_



not modelled 96.3 12 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
119c2e7xA_



not modelled 96.3 11 PDB header:transcription regulator
Chain: A: PDB Molecule:150aa long hypothetical transcriptional regulator;
PDBTitle: structure of the lrp/asnc like transcriptional regulator from2 sulfolobus tokodaii 7 complexed with its cognate ligand
120d2fbha1



not modelled 96.3 24 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0