PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c1or7A_

Fold library id	PDB Header	Molecule	Title
c1or7A_	PDB header: transcription	Chain: A: PDB Molecule: rna polymerase sigma-e factor;	PDBTitle: crystal structure of escherichia coli sigmae with the2 cytoplasmic domain of its anti-sigma rsea

Links to external resources
Added to library: Tue Mar 16 12:54:08 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence S H M S E Q L T D Q V L V E R V Q K G D Q K A F N L L V V R Y Q H K V A S L V S R Y V P S G D V P D V V Q E A F I K A Y R A L D S F R G D S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S T T
T T T S
G G G G G G
S S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence A F Y T W L Y R I A V N T A K N Y L V A Q G R R P P S S D V D A I E A E N F E S G G A N L M L S E E L R Q I V F R T I E S L P E D L R M A I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
T S
S S
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 .

Sequence T L R E L D G L S Y E E I A A I M D C P V G T V R S R I F R A R E A I D N K V Q P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
T T S

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	S	H	M	S	E	Q	L	T	D	Q	V	L	V	E	R	V	Q	K	G	D	Q	K	A	F	N	L	L	V	V	R	Y	Q	H	K	V	A	S	L	V	S	R	Y	V	P	S	G	D	V	P	D	V	V	Q	E	A	F	I	K	A	Y	R	A	L	D	S	F	R	G	D	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S															T	T																					T	T	T	S		G	G	G																G	G	G			S	S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	A	F	Y	T	W	L	Y	R	I	A	V	N	T	A	K	N	Y	L	V	A	Q	G	R	R	P	P	S	S	D	V	D	A	I	E	A	E	N	F	E	S	G	G	A	N	L	M	L	S	E	E	L	R	Q	I	V	F	R	T	I	E	S	L	P	E	D	L	R	M	A	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																						T	T			T											S			S	S																					S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
Sequence	T	L	R	E	L	D	G	L	S	Y	E	E	I	A	A	I	M	D	C	P	V	G	T	V	R	S	R	I	F	R	A	R	E	A	I	D	N	K	V	Q	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					T	T											T	T	S