PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c3nzeB_

Fold library id	PDB Header	Molecule	Title
c3nzeB_	PDB header: transcription regulator	Chain: B: PDB Molecule: putative transcriptional regulator, sugar-binding family;	PDBTitle: the crystal structure of a domain of a possible sugar-binding2 transcriptional regulator from arthrobacter aurescens tc1.

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Added to library: Sun Aug 29 03:28:18 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence A S P F D T G P E L E S Q I R N Q Y G V D V H V V P V L D T L N E A E T L D R V A X Q A A R T I G P L V D S N A I I G V A W G A T L S A V S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
T T S
G G G
T T
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence R H L T R K X T H D S I V V Q L N G A G N X Q T T G I T Y A S D I X R R F G S A Y G A R V E Q F P V P A F F D H A S T K T A X W N E R S V Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S S
S
T T S
S T
S
S S
S
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence R I L D L Q A R X S I A I F G V G S V D S D Y P S H V Y A G G Y L D E H D L T X L A A D D V V G D V A T V F F R S D G S S D G I T L N E R S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S
S S S T T S
T T S S S
G G G T T T T T T S
T T
G G G G G

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . .

Sequence T G P S H E Q L R Q V R R R I C V V S G A S K I N G L Q G A L A A G L A T D L I L D E A S A R R L V S F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T T S S
S G G G T T
S T

Download: PDB structure FASTA sequence
Hidden Markov model

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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	A	S	P	F	D	T	G	P	E	L	E	S	Q	I	R	N	Q	Y	G	V	D	V	H	V	V	P	V	L	D	T	L	N	E	A	E	T	L	D	R	V	A	X	Q	A	A	R	T	I	G	P	L	V	D	S	N	A	I	I	G	V	A	W	G	A	T	L	S	A	V	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T	T																									T	T	S																		G	G	G			T	T								S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	R	H	L	T	R	K	X	T	H	D	S	I	V	V	Q	L	N	G	A	G	N	X	Q	T	T	G	I	T	Y	A	S	D	I	X	R	R	F	G	S	A	Y	G	A	R	V	E	Q	F	P	V	P	A	F	F	D	H	A	S	T	K	T	A	X	W	N	E	R	S	V	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T							S	S							S					T	T	S		S																T								S		S	S		S									T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	R	I	L	D	L	Q	A	R	X	S	I	A	I	F	G	V	G	S	V	D	S	D	Y	P	S	H	V	Y	A	G	G	Y	L	D	E	H	D	L	T	X	L	A	A	D	D	V	V	G	D	V	A	T	V	F	F	R	S	D	G	S	S	D	G	I	T	L	N	E	R	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							T	T		S											S	S	S	T	T	S			T	T	S	S	S		G	G	G							T	T						T	T					T	T	S			T	T		G	G	G	G	G
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
Sequence	T	G	P	S	H	E	Q	L	R	Q	V	R	R	R	I	C	V	V	S	G	A	S	K	I	N	G	L	Q	G	A	L	A	A	G	L	A	T	D	L	I	L	D	E	A	S	A	R	R	L	V	S	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S							T	T	S	S								S	G	G	G										T	T			S														T