PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c1rp3G_

Fold library id	PDB Header	Molecule	Title
c1rp3G_	PDB header: transcription	Chain: G: PDB Molecule: rna polymerase sigma factor sigma-28 (flia);	PDBTitle: cocrystal structure of the flagellar sigma/anti-sigma2 complex, sigma-28/flgm

Links to external resources
Added to library: Tue Mar 16 12:01:31 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence M K N P Y S N Q I E R E E L I L K Y L P L V K A I A T N I K K H L P E D V D I R D L I S Y G V I G L I K A V D N L S T E N P K R A E A Y I K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T S
T T S
T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence L R I K G A I Y D Y L R S L D F G S R Q V R E K E R R I K E V V E K L K E K L G R E P T D E E V A K E L G I S T E E L F K T L D K I N F S Y

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S S T T
S S
T S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence I L S L E E V F R D F A R D Y S E E V I K R E L T E K V K E A V S K L P E R E K L V I Q L I F Y E E L P A K E V A K I L E T S V S R V S Q L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T S
T S
T S

. . . . . . . . . 220 . . . . . .

Sequence K A K A L E R L R E M L S N P L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	M	K	N	P	Y	S	N	Q	I	E	R	E	E	L	I	L	K	Y	L	P	L	V	K	A	I	A	T	N	I	K	K	H	L	P	E	D	V	D	I	R	D	L	I	S	Y	G	V	I	G	L	I	K	A	V	D	N	L	S	T	E	N	P	K	R	A	E	A	Y	I	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																		T													T	T	S		T	T	S																			T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	L	R	I	K	G	A	I	Y	D	Y	L	R	S	L	D	F	G	S	R	Q	V	R	E	K	E	R	R	I	K	E	V	V	E	K	L	K	E	K	L	G	R	E	P	T	D	E	E	V	A	K	E	L	G	I	S	T	E	E	L	F	K	T	L	D	K	I	N	F	S	Y
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)													T	S	S	T	T																							S	S												T	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	I	L	S	L	E	E	V	F	R	D	F	A	R	D	Y	S	E	E	V	I	K	R	E	L	T	E	K	V	K	E	A	V	S	K	L	P	E	R	E	K	L	V	I	Q	L	I	F	Y	E	E	L	P	A	K	E	V	A	K	I	L	E	T	S	V	S	R	V	S	Q	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																																		T	S													T	S												T	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
Sequence	K	A	K	A	L	E	R	L	R	E	M	L	S	N	P	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)														S