PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c3kv1A_

Fold library id	PDB Header	Molecule	Title
c3kv1A_	PDB header: transcription	Chain: A: PDB Molecule: transcriptional repressor;	PDBTitle: crystal structure of putative sugar-binding domain of2 transcriptional repressor from vibrio fischeri

Links to external resources
Added to library: Sat Aug 28 18:32:37 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence S V Q L E Q K L V E K F N L K R A L I S L D Q P N T N E Q R K Q V A A L V S S Y L N N N L Q E G X A V A V G Q G Q N V A A V A D H A G I V T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T
S
S S
T T
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence Q R N A R F V S A I G G T H I I N A D H I C R R L A K K Y G G S S E T L Y A P A Y V N D P S L R S A F X E H A T I K E T L S Q A R K A E F A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S B
B
T
S B S B
S S T S T
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence L V G I G D X D E N S H X V K L G F F T P K E F V E A R L N D G I V G D I G G F D F F K L D G T D A D T L X R G R V I G L E X E D L R Q I P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T S S
T T
T T T T T S
B
G G G G G B
B
T S S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . .

Sequence N V V A X A S E S R K A L S I X G A L R T G V I D V L A T S V S C A X A L L N L A E N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G T S
S

Download: PDB structure FASTA sequence
Hidden Markov model

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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	S	V	Q	L	E	Q	K	L	V	E	K	F	N	L	K	R	A	L	I	S	L	D	Q	P	N	T	N	E	Q	R	K	Q	V	A	A	L	V	S	S	Y	L	N	N	N	L	Q	E	G	X	A	V	A	V	G	Q	G	Q	N	V	A	A	V	A	D	H	A	G	I	V	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)													T		S									S	S																						T	T								S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	Q	R	N	A	R	F	V	S	A	I	G	G	T	H	I	I	N	A	D	H	I	C	R	R	L	A	K	K	Y	G	G	S	S	E	T	L	Y	A	P	A	Y	V	N	D	P	S	L	R	S	A	F	X	E	H	A	T	I	K	E	T	L	S	Q	A	R	K	A	E	F	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									S	B		B																		T								S	B	S	B		S	S									T	S												T		S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	L	V	G	I	G	D	X	D	E	N	S	H	X	V	K	L	G	F	F	T	P	K	E	F	V	E	A	R	L	N	D	G	I	V	G	D	I	G	G	F	D	F	F	K	L	D	G	T	D	A	D	T	L	X	R	G	R	V	I	G	L	E	X	E	D	L	R	Q	I	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											T					T	T	S	S											T	T							T	T	T					T	T	S		B				G	G	G	G	G	B		B								T	S	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
Sequence	N	V	V	A	X	A	S	E	S	R	K	A	L	S	I	X	G	A	L	R	T	G	V	I	D	V	L	A	T	S	V	S	C	A	X	A	L	L	N	L	A	E	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									G	G	G										T	S			S