PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3dkwB_

Fold library id	PDB Header	Molecule	Title
c3dkwB_	PDB header: transcription regulator	Chain: B: PDB Molecule: dnr protein;	PDBTitle: crystal structure of dnr from pseudomonas aeruginosa.

Links to external resources
Added to library: Sun Aug 29 00:29:45 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence M E F Q R V H Q Q L L Q S H H L F E P L S P V Q L Q E L L A S S D L V N L D K G A Y V F R Q G E P A H A F Y Y L I S G C V K I Y R L T P E G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S T T T S S S
T T S
S S S B
S
S S S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence Q E K I L E V T N E R N T F A E A M M F M D T P N Y V A T A Q A V V P S Q L F R F S N K A Y L R Q L Q D N T P L A L A L L A K L S T R L H Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
T T S
T T
S B
S S
S S
S S
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence R I D E I E T L S L K N A T H R V V R Y L L T L A A H A P G E N C R V E I P V A K Q L V A G H L S I Q P E T F S R I M H R L G D E G I I H L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S S S S S
S S S
S S
T T T T
T S S
S

. . . . . . . . . 220 . . . . . . .

Sequence D G R E I S I L D R E R L E C F E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S S S
S
S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	M	E	F	Q	R	V	H	Q	Q	L	L	Q	S	H	H	L	F	E	P	L	S	P	V	Q	L	Q	E	L	L	A	S	S	D	L	V	N	L	D	K	G	A	Y	V	F	R	Q	G	E	P	A	H	A	F	Y	Y	L	I	S	G	C	V	K	I	Y	R	L	T	P	E	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					S	S								S	T	T	T	S	S	S																			T	T			S			S	S	S	B										S								S	S	S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	Q	E	K	I	L	E	V	T	N	E	R	N	T	F	A	E	A	M	M	F	M	D	T	P	N	Y	V	A	T	A	Q	A	V	V	P	S	Q	L	F	R	F	S	N	K	A	Y	L	R	Q	L	Q	D	N	T	P	L	A	L	A	L	L	A	K	L	S	T	R	L	H	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S									T	T				S						T	T		S	B		S	S					S	S																	S	S		S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	R	I	D	E	I	E	T	L	S	L	K	N	A	T	H	R	V	V	R	Y	L	L	T	L	A	A	H	A	P	G	E	N	C	R	V	E	I	P	V	A	K	Q	L	V	A	G	H	L	S	I	Q	P	E	T	F	S	R	I	M	H	R	L	G	D	E	G	I	I	H	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																									S	S	S	S	S	S		S	S	S		S	S				T	T						T	T																	T	S	S		S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
Sequence	D	G	R	E	I	S	I	L	D	R	E	R	L	E	C	F	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S	S	S	S				S		S