Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	S	V	M	F	D	P	D	T	A	I	Y	P	F	P	P	K	P	T	P	L	S	I	D	E	K	A	Y	Y	R	E	K	I	K	R	L	L	K	E	R	N	A	V	M	V	A	H	Y	Y	T	D	P	E	I	Q	Q	L	A	E	E
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?					?	?			?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		T	G	G	C	I	S	D	S	L	E	M	A	R	F	G	A	K	H	P	A	S	T	L	L	V	A	G	V	R	F	M	G	E	T	A	K	I	L	S	P	E	K	T	I	L	M	P	T	L	Q	A	E	C	S	L	D	L	G	C	P
Secondary structure
SS confidence
Disorder																																							?		?		?												?	?				?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		V	E	E	F	N	A	F	C	D	A	H	P	D	R	T	V	V	V	Y	A	N	T	S	A	A	V	K	A	R	A	D	W	V	V	T	S	S	I	A	V	E	L	I	D	H	L	D	S	L	G	E	K	I	I	W	A	P	D	K	H
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		L	G	R	Y	V	Q	K	Q	T	G	G	D	I	L	C	W	Q	G	A	C	I	V	H	D	E	F	K	T	Q	A	L	T	R	L	Q	E	E	Y	P	D	A	A	I	L	V	H	P	E	S	P	Q	A	I	V	D	M	A	D	A	V
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		G	S	T	S	Q	L	I	A	A	A	K	T	L	P	H	Q	R	L	I	V	A	T	D	R	G	I	F	Y	K	M	Q	Q	A	V	P	D	K	E	L	L	E	A	P	T	A	G	E	G	A	T	C	R	S	C	A	H	C	P	W	M
Secondary structure
SS confidence
Disorder																																													?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.
Sequence		A	M	N	G	L	Q	A	I	A	E	A	L	E	Q	E	G	S	N	H	E	V	H	V	D	E	R	L	R	E	R	A	L	V	P	L	N	R	M	L	D	F	A	A	T	L	R	G
Secondary structure
SS confidence
Disorder																		?	?		?																					?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2qs0 chain A Region: 23 - 342 Aligned: 292 Modelled: 311 Confidence: 100.0% Identity: 39% PDB header:biosynthetic protein Chain: A: PDB Molecule:quinolinate synthetase a; PDBTitle: quinolinate synthase from pyrococcus furiosus Phyre2 PDB 1wzu chain A domain 1 Region: 28 - 341 Aligned: 270 Modelled: 302 Confidence: 100.0% Identity: 40% Fold: NadA-like Superfamily: NadA-like Family: NadA-like Phyre2 PDB 3dmp chain D Region: 98 - 225 Aligned: 94 Modelled: 102 Confidence: 74.2% Identity: 23% PDB header:transferase Chain: D: PDB Molecule:uracil phosphoribosyltransferase; PDBTitle: 2.6 a crystal structure of uracil phosphoribosyltransferase2 from burkholderia pseudomallei Phyre2 PDB 2nx2 chain A domain 1 Region: 116 - 228 Aligned: 107 Modelled: 113 Confidence: 70.1% Identity: 10% Fold: MCP/YpsA-like Superfamily: MCP/YpsA-like Family: YpsA-like Phyre2 PDB 2e55 chain D Region: 98 - 225 Aligned: 95 Modelled: 103 Confidence: 61.9% Identity: 21% PDB header:transferase Chain: D: PDB Molecule:uracil phosphoribosyltransferase; PDBTitle: structure of aq2163 protein from aquifex aeolicus Phyre2 PDB 2ekc chain A Region: 29 - 141 Aligned: 87 Modelled: 102 Confidence: 59.5% Identity: 25% PDB header:lyase Chain: A: PDB Molecule:tryptophan synthase alpha chain; PDBTitle: structural study of project id aq_1548 from aquifex aeolicus vf5 Phyre2 PDB 3fn9 chain B Region: 20 - 62 Aligned: 43 Modelled: 43 Confidence: 57.9% Identity: 16% PDB header:hydrolase Chain: B: PDB Molecule:putative beta-galactosidase; PDBTitle: crystal structure of putative beta-galactosidase from bacteroides2 fragilis Phyre2 PDB 3cmg chain A Region: 19 - 62 Aligned: 44 Modelled: 44 Confidence: 55.2% Identity: 23% PDB header:hydrolase Chain: A: PDB Molecule:putative beta-galactosidase; PDBTitle: crystal structure of putative beta-galactosidase from bacteroides2 fragilis Phyre2 PDB 16pk chain A Region: 62 - 259 Aligned: 146 Modelled: 166 Confidence: 52.6% Identity: 21% Fold: Phosphoglycerate kinase Superfamily: Phosphoglycerate kinase Family: Phosphoglycerate kinase Phyre2 PDB 1xhj chain A Region: 111 - 143 Aligned: 33 Modelled: 33 Confidence: 51.4% Identity: 12% Fold: Alpha-lytic protease prodomain-like Superfamily: Fe-S cluster assembly (FSCA) domain-like Family: NifU C-terminal domain-like Phyre2 PDB 3gm8 chain A Region: 19 - 62 Aligned: 44 Modelled: 44 Confidence: 48.1% Identity: 20% PDB header:hydrolase Chain: A: PDB Molecule:glycoside hydrolase family 2, candidate beta-glycosidase; PDBTitle: crystal structure of a beta-glycosidase from bacteroides vulgatus Phyre2 PDB 2tps chain A Region: 18 - 164 Aligned: 133 Modelled: 147 Confidence: 47.2% Identity: 16% Fold: TIM beta/alpha-barrel Superfamily: Thiamin phosphate synthase Family: Thiamin phosphate synthase Phyre2 PDB 1j97 chain A Region: 98 - 166 Aligned: 54 Modelled: 55 Confidence: 46.8% Identity: 13% Fold: HAD-like Superfamily: HAD-like Family: Phosphoserine phosphatase Phyre2 PDB 1jbq chain A Region: 152 - 300 Aligned: 129 Modelled: 149 Confidence: 46.7% Identity: 20% Fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes Superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes Family: Tryptophan synthase beta subunit-like PLP-dependent enzymes Phyre2 PDB 1jbq chain D Region: 152 - 300 Aligned: 129 Modelled: 149 Confidence: 46.7% Identity: 20% PDB header:lyase Chain: D: PDB Molecule:cystathionine beta-synthase; PDBTitle: structure of human cystathionine beta-synthase: a unique pyridoxal 5'-2 phosphate dependent hemeprotein Phyre2 PDB 1ybh chain A domain 1 Region: 18 - 111 Aligned: 91 Modelled: 94 Confidence: 45.6% Identity: 20% Fold: DHS-like NAD/FAD-binding domain Superfamily: DHS-like NAD/FAD-binding domain Family: Pyruvate oxidase and decarboxylase, middle domain Phyre2 PDB 3iz6 chain A Region: 158 - 241 Aligned: 79 Modelled: 84 Confidence: 45.1% Identity: 15% PDB header:ribosome Chain: A: PDB Molecule:40s ribosomal protein sa (s2p); PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome Phyre2 PDB 3k7p chain A Region: 28 - 87 Aligned: 55 Modelled: 60 Confidence: 42.0% Identity: 20% PDB header:isomerase Chain: A: PDB Molecule:ribose 5-phosphate isomerase; PDBTitle: structure of mutant of ribose 5-phosphate isomerase type b from2 trypanosoma cruzi. Phyre2 PDB 1vhc chain A Region: 48 - 225 Aligned: 145 Modelled: 148 Confidence: 41.1% Identity: 19% Fold: TIM beta/alpha-barrel Superfamily: Aldolase Family: Class I aldolase Phyre2 PDB 2ez9 chain A domain 1 Region: 12 - 112 Aligned: 97 Modelled: 101 Confidence: 40.1% Identity: 18% Fold: DHS-like NAD/FAD-binding domain Superfamily: DHS-like NAD/FAD-binding domain Family: Pyruvate oxidase and decarboxylase, middle domain Phyre2 1 c2qs0A_ 2 d1wzua1 3 c3dmpD_ 4 d2nx2a1 5 c2e55D_ 6 c2ekcA_ 7 c3fn9B_ 8 c3cmgA_ 9 d16pka_ 10 d1xhja_ 11 c3gm8A_ 12 d2tpsa_ 13 d1j97a_ 14 d1jbqa_ 15 c1jbqD_ 16 d1ybha1 17 c3iz6A_ 18 c3k7pA_ 19 d1vhca_ 20 d2ez9a1 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2qs0A_ 100.0 39 PDB header:biosynthetic protein Chain: A: PDB Molecule:quinolinate synthetase a; PDBTitle: quinolinate synthase from pyrococcus furiosus 2 d1wzua1 100.0 40 Fold:NadA-like Superfamily:NadA-like Family:NadA-like 3 c3dmpD_ 74.2 23 PDB header:transferase Chain: D: PDB Molecule:uracil phosphoribosyltransferase; PDBTitle: 2.6 a crystal structure of uracil phosphoribosyltransferase2 from burkholderia pseudomallei 4 d2nx2a1 70.1 10 Fold:MCP/YpsA-like Superfamily:MCP/YpsA-like Family:YpsA-like 5 c2e55D_ 61.9 21 PDB header:transferase Chain: D: PDB Molecule:uracil phosphoribosyltransferase; PDBTitle: structure of aq2163 protein from aquifex aeolicus 6 c2ekcA_ 59.5 25 PDB header:lyase Chain: A: PDB Molecule:tryptophan synthase alpha chain; PDBTitle: structural study of project id aq_1548 from aquifex aeolicus vf5 7 c3fn9B_ 57.9 16 PDB header:hydrolase Chain: B: PDB Molecule:putative beta-galactosidase; PDBTitle: crystal structure of putative beta-galactosidase from bacteroides2 fragilis 8 c3cmgA_ 55.2 23 PDB header:hydrolase Chain: A: PDB Molecule:putative beta-galactosidase; PDBTitle: crystal structure of putative beta-galactosidase from bacteroides2 fragilis 9 d16pka_ 52.6 21 Fold:Phosphoglycerate kinase Superfamily:Phosphoglycerate kinase Family:Phosphoglycerate kinase 10 d1xhja_ 51.4 12 Fold:Alpha-lytic protease prodomain-like Superfamily:Fe-S cluster assembly (FSCA) domain-like Family:NifU C-terminal domain-like 11 c3gm8A_ 48.1 20 PDB header:hydrolase Chain: A: PDB Molecule:glycoside hydrolase family 2, candidate beta-glycosidase; PDBTitle: crystal structure of a beta-glycosidase from bacteroides vulgatus 12 d2tpsa_ 47.2 16 Fold:TIM beta/alpha-barrel Superfamily:Thiamin phosphate synthase Family:Thiamin phosphate synthase 13 d1j97a_ 46.8 13 Fold:HAD-like Superfamily:HAD-like Family:Phosphoserine phosphatase 14 d1jbqa_ 46.7 20 Fold:Tryptophan synthase beta subunit-like PLP-dependent enzymes Superfamily:Tryptophan synthase beta subunit-like PLP-dependent enzymes Family:Tryptophan synthase beta subunit-like PLP-dependent enzymes 15 c1jbqD_ 46.7 20 PDB header:lyase Chain: D: PDB Molecule:cystathionine beta-synthase; PDBTitle: structure of human cystathionine beta-synthase: a unique pyridoxal 5'-2 phosphate dependent hemeprotein 16 d1ybha1 45.6 20 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Pyruvate oxidase and decarboxylase, middle domain 17 c3iz6A_ 45.1 15 PDB header:ribosome Chain: A: PDB Molecule:40s ribosomal protein sa (s2p); PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 18 c3k7pA_ 42.0 20 PDB header:isomerase Chain: A: PDB Molecule:ribose 5-phosphate isomerase; PDBTitle: structure of mutant of ribose 5-phosphate isomerase type b from2 trypanosoma cruzi. 19 d1vhca_ 41.1 19 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase 20 d2ez9a1 40.1 18 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Pyruvate oxidase and decarboxylase, middle domain 21 c3m1pA_ not modelled 39.5 20 PDB header:isomerase Chain: A: PDB Molecule:ribose 5-phosphate isomerase; PDBTitle: structure of ribose 5-phosphate isomerase type b from trypanosoma2 cruzi, soaked with allose-6-phosphate 22 c3p04B_ not modelled 39.4 15 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized bcr; PDBTitle: crystal structure of the bcr protein from corynebacterium glutamicum.2 northeast structural genomics consortium target cgr8 23 d1ojra_ not modelled 38.7 7 Fold:AraD/HMP-PK domain-like Superfamily:AraD/HMP-PK domain-like Family:AraD-like aldolase/epimerase 24 c2pcjB_ not modelled 38.5 11 PDB header:hydrolase Chain: B: PDB Molecule:lipoprotein-releasing system atp-binding protein lold; PDBTitle: crystal structure of abc transporter (aq_297) from aquifex aeolicus2 vf5 25 c3p9zA_ not modelled 37.6 19 PDB header:ligase Chain: A: PDB Molecule:uroporphyrinogen iii cosynthase (hemd); PDBTitle: crystal structure of uroporphyrinogen-iii synthetase from helicobacter2 pylori 26695 26 d1jr2a_ not modelled 37.4 19 Fold:HemD-like Superfamily:HemD-like Family:HemD-like 27 c1jr2A_ not modelled 37.4 19 PDB header:lyase Chain: A: PDB Molecule:uroporphyrinogen-iii synthase; PDBTitle: structure of uroporphyrinogen iii synthase 28 c1s1hB_ not modelled 37.3 18 PDB header:ribosome Chain: B: PDB Molecule:40s ribosomal protein s0-a; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1h,4 contains 40s subunit. the 60s ribosomal subunit is in file5 1s1i. 29 c2ejaB_ not modelled 33.3 14 PDB header:lyase Chain: B: PDB Molecule:uroporphyrinogen decarboxylase; PDBTitle: crystal structure of uroporphyrinogen decarboxylase from2 aquifex aeolicus 30 c1zq1B_ not modelled 33.2 26 PDB header:lyase Chain: B: PDB Molecule:glutamyl-trna(gln) amidotransferase subunit d; PDBTitle: structure of gatde trna-dependent amidotransferase from2 pyrococcus abyssi 31 d1zbra1 not modelled 32.5 20 Fold:Pentein, beta/alpha-propeller Superfamily:Pentein Family:Porphyromonas-type peptidylarginine deiminase 32 c3p04A_ not modelled 32.1 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized bcr; PDBTitle: crystal structure of the bcr protein from corynebacterium glutamicum.2 northeast structural genomics consortium target cgr8 33 c2infB_ not modelled 31.7 13 PDB header:lyase Chain: B: PDB Molecule:uroporphyrinogen decarboxylase; PDBTitle: crystal structure of uroporphyrinogen decarboxylase from2 bacillus subtilis 34 c3bg3B_ not modelled 31.3 22 PDB header:ligase Chain: B: PDB Molecule:pyruvate carboxylase, mitochondrial; PDBTitle: crystal structure of human pyruvate carboxylase (missing2 the biotin carboxylase domain at the n-terminus) 35 d1hrua_ not modelled 29.8 15 Fold:YrdC/RibB Superfamily:YrdC/RibB Family:YrdC-like 36 c1d7kB_ not modelled 29.7 17 PDB header:lyase Chain: B: PDB Molecule:human ornithine decarboxylase; PDBTitle: crystal structure of human ornithine decarboxylase at 2.12 angstroms resolution 37 d1veha_ not modelled 29.4 9 Fold:Alpha-lytic protease prodomain-like Superfamily:Fe-S cluster assembly (FSCA) domain-like Family:NifU C-terminal domain-like 38 d1zq1a2 not modelled 29.3 26 Fold:Glutaminase/Asparaginase Superfamily:Glutaminase/Asparaginase Family:Glutaminase/Asparaginase 39 c1oidA_ not modelled 28.8 15 PDB header:hydrolase Chain: A: PDB Molecule:protein usha; PDBTitle: 5'-nucleotidase (e. coli) with an engineered disulfide2 bridge (s228c, p513c) 40 d1bd3a_ not modelled 28.6 21 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 41 d2awna2 not modelled 28.5 23 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:ABC transporter ATPase domain-like 42 d1bw0a_ not modelled 28.2 16 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like 43 c2p5tA_ not modelled 27.6 30 PDB header:transcription regulator Chain: A: PDB Molecule:putative transcriptional regulator peza; PDBTitle: molecular and structural characterization of the pezat chromosomal2 toxin-antitoxin system of the human pathogen streptococcus pneumoniae 44 d2pjua1 not modelled 27.5 17 Fold:Chelatase-like Superfamily:PrpR receptor domain-like Family:PrpR receptor domain-like 45 c3dwgA_ not modelled 26.5 15 PDB header:transferase Chain: A: PDB Molecule:cysteine synthase b; PDBTitle: crystal structure of a sulfur carrier protein complex found in the2 cysteine biosynthetic pathway of mycobacterium tuberculosis 46 d1agxa_ not modelled 26.4 29 Fold:Glutaminase/Asparaginase Superfamily:Glutaminase/Asparaginase Family:Glutaminase/Asparaginase 47 d1xkna_ not modelled 26.2 16 Fold:Pentein, beta/alpha-propeller Superfamily:Pentein Family:Porphyromonas-type peptidylarginine deiminase 48 d1pvda1 not modelled 26.2 21 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Pyruvate oxidase and decarboxylase, middle domain 49 d1wbha1 not modelled 25.4 15 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase 50 d1v9sa1 not modelled 25.1 24 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 51 d1pswa_ not modelled 25.0 14 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:ADP-heptose LPS heptosyltransferase II 52 c2xznB_ not modelled 24.8 19 PDB header:ribosome Chain: B: PDB Molecule:rps0e; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2 53 d1b0ua_ not modelled 24.2 14 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:ABC transporter ATPase domain-like 54 d1phpa_ not modelled 24.1 17 Fold:Phosphoglycerate kinase Superfamily:Phosphoglycerate kinase Family:Phosphoglycerate kinase 55 c3hbmA_ not modelled 23.9 11 PDB header:hydrolase Chain: A: PDB Molecule:udp-sugar hydrolase; PDBTitle: crystal structure of pseg from campylobacter jejuni 56 c3nm3D_ not modelled 23.3 14 PDB header:transferase Chain: D: PDB Molecule:thiamine biosynthetic bifunctional enzyme; PDBTitle: the crystal structure of candida glabrata thi6, a bifunctional enzyme2 involved in thiamin biosyhthesis of eukaryotes 57 d1jcua_ not modelled 22.9 10 Fold:YrdC/RibB Superfamily:YrdC/RibB Family:YrdC-like 58 c2yswB_ not modelled 22.8 9 PDB header:lyase Chain: B: PDB Molecule:3-dehydroquinate dehydratase; PDBTitle: crystal structure of the 3-dehydroquinate dehydratase from aquifex2 aeolicus vf5 59 c2htmB_ not modelled 22.8 23 PDB header:biosynthetic protein Chain: B: PDB Molecule:thiazole biosynthesis protein thig; PDBTitle: crystal structure of ttha0676 from thermus thermophilus hb8 60 d1g2912 not modelled 22.0 12 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:ABC transporter ATPase domain-like 61 c2ehhE_ not modelled 20.3 19 PDB header:lyase Chain: E: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of dihydrodipicolinate synthase from2 aquifex aeolicus 62 c3tovB_ not modelled 20.0 13 PDB header:transferase Chain: B: PDB Molecule:glycosyl transferase family 9; PDBTitle: the crystal structure of the glycosyl transferase family 9 from2 veillonella parvula dsm 2008 63 c3bchA_ not modelled 19.9 14 PDB header:cell adhesion, ribosomal protein Chain: A: PDB Molecule:40s ribosomal protein sa; PDBTitle: crystal structure of the human laminin receptor precursor 64 d1i5ea_ not modelled 19.7 20 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 65 c3bgaB_ not modelled 19.3 31 PDB header:hydrolase Chain: B: PDB Molecule:beta-galactosidase; PDBTitle: crystal structure of beta-galactosidase from bacteroides2 thetaiotaomicron vpi-5482 66 c3il0B_ not modelled 17.7 14 PDB header:hydrolase Chain: B: PDB Molecule:aminopeptidase p; xaa-pro aminopeptidase; PDBTitle: the crystal structure of the aminopeptidase p,xaa-pro aminopeptidase2 from streptococcus thermophilus 67 c2yz2B_ not modelled 17.5 12 PDB header:hydrolase Chain: B: PDB Molecule:putative abc transporter atp-binding protein tm_0222; PDBTitle: crystal structure of the abc transporter in the cobalt transport2 system 68 d1usha2 not modelled 17.4 16 Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:5'-nucleotidase (syn. UDP-sugar hydrolase), N-terminal domain 69 c3jyfB_ not modelled 17.2 11 PDB header:hydrolase Chain: B: PDB Molecule:2',3'-cyclic nucleotide 2'-phosphodiesterase/3'- PDBTitle: the crystal structure of a 2,3-cyclic nucleotide 2-2 phosphodiesterase/3-nucleotidase bifunctional periplasmic precursor3 protein from klebsiella pneumoniae subsp. pneumoniae mgh 78578 70 c2jnvA_ not modelled 16.8 14 PDB header:metal transport Chain: A: PDB Molecule:nifu-like protein 1, chloroplast; PDBTitle: solution structure of c-terminal domain of nifu-like2 protein from oryza sativa 71 d3dhwc1 not modelled 16.7 7 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:ABC transporter ATPase domain-like 72 d2d6fa2 not modelled 16.4 24 Fold:Glutaminase/Asparaginase Superfamily:Glutaminase/Asparaginase Family:Glutaminase/Asparaginase 73 c3nxkE_ not modelled 16.3 29 PDB header:hydrolase Chain: E: PDB Molecule:cytoplasmic l-asparaginase; PDBTitle: crystal structure of probable cytoplasmic l-asparaginase from2 campylobacter jejuni 74 c1zmrA_ not modelled 16.3 15 PDB header:transferase Chain: A: PDB Molecule:phosphoglycerate kinase; PDBTitle: crystal structure of the e. coli phosphoglycerate kinase 75 d1r3sa_ not modelled 16.1 16 Fold:TIM beta/alpha-barrel Superfamily:UROD/MetE-like Family:Uroporphyrinogen decarboxylase, UROD 76 d2ocda1 not modelled 16.1 24 Fold:Glutaminase/Asparaginase Superfamily:Glutaminase/Asparaginase Family:Glutaminase/Asparaginase 77 d2vzsa5 not modelled 16.0 20 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-glycanases 78 c2k4mA_ not modelled 16.0 20 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0146 protein mth_1000; PDBTitle: solution nmr structure of m. thermoautotrophicum protein2 mth_1000, northeast structural genomics consortium target3 tr8 79 c3pihA_ not modelled 16.0 20 PDB header:hydrolase/dna Chain: A: PDB Molecule:uvrabc system protein a; PDBTitle: t. maritima uvra in complex with fluorescein-modified dna 80 c1zfjA_ not modelled 15.8 14 PDB header:oxidoreductase Chain: A: PDB Molecule:inosine monophosphate dehydrogenase; PDBTitle: inosine monophosphate dehydrogenase (impdh; ec 1.1.1.205) from2 streptococcus pyogenes 81 c2e0kA_ not modelled 15.6 8 PDB header:transferase Chain: A: PDB Molecule:precorrin-2 c20-methyltransferase; PDBTitle: crystal structure of cbil, a methyltransferase involved in anaerobic2 vitamin b12 biosynthesis 82 c2vzvB_ not modelled 15.6 20 PDB header:hydrolase Chain: B: PDB Molecule:exo-beta-d-glucosaminidase; PDBTitle: substrate complex of amycolatopsis orientalis exo-2 chitosanase csxa e541a with chitosan 83 c1q1bD_ not modelled 15.5 21 PDB header:transport protein Chain: D: PDB Molecule:maltose/maltodextrin transport atp-binding protein malk; PDBTitle: crystal structure of e. coli malk in the nucleotide-free form 84 c2r8zC_ not modelled 15.4 30 PDB header:hydrolase Chain: C: PDB Molecule:3-deoxy-d-manno-octulosonate 8-phosphate phosphatase; PDBTitle: crystal structure of yrbi phosphatase from escherichia coli in complex2 with a phosphate and a calcium ion 85 d1pvta_ not modelled 15.4 10 Fold:AraD/HMP-PK domain-like Superfamily:AraD/HMP-PK domain-like Family:AraD-like aldolase/epimerase 86 c2i4rA_ not modelled 15.3 18 PDB header:hydrolase Chain: A: PDB Molecule:v-type atp synthase subunit f; PDBTitle: crystal structure of the v-type atp synthase subunit f from2 archaeoglobus fulgidus. nesg target gr52a. 87 c2kg4A_ not modelled 15.2 32 PDB header:cell cycle Chain: A: PDB Molecule:growth arrest and dna-damage-inducible protein PDBTitle: three-dimensional structure of human gadd45alpha in2 solution by nmr 88 c1wnfA_ not modelled 15.2 26 PDB header:hydrolase Chain: A: PDB Molecule:l-asparaginase; PDBTitle: crystal structure of ph0066 from pyrococcus horikoshii 89 c2d3wB_ not modelled 15.1 13 PDB header:biosynthetic protein Chain: B: PDB Molecule:probable atp-dependent transporter sufc; PDBTitle: crystal structure of escherichia coli sufc, an atpase2 compenent of the suf iron-sulfur cluster assembly machinery 90 c3m1yA_ not modelled 15.0 15 PDB header:hydrolase Chain: A: PDB Molecule:phosphoserine phosphatase (serb); PDBTitle: crystal structure of a phosphoserine phosphatase (serb) from2 helicobacter pylori 91 c1nm3B_ not modelled 14.7 24 PDB header:electron transport Chain: B: PDB Molecule:protein hi0572; PDBTitle: crystal structure of heamophilus influenza hybrid-prx5 92 c2yxgD_ not modelled 14.7 13 PDB header:lyase Chain: D: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of dihyrodipicolinate synthase (dapa) 93 c2olkD_ not modelled 14.7 12 PDB header:hydrolase Chain: D: PDB Molecule:amino acid abc transporter; PDBTitle: abc protein artp in complex with adp-beta-s 94 c2o7qA_ not modelled 14.7 15 PDB header:oxidoreductase,transferase Chain: A: PDB Molecule:bifunctional 3-dehydroquinate dehydratase/shikimate PDBTitle: crystal structure of the a. thaliana dhq-dehydroshikimate-sdh-2 shikimate-nadp(h) 95 d1ji0a_ not modelled 14.7 11 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:ABC transporter ATPase domain-like 96 d1g6ha_ not modelled 14.6 9 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:ABC transporter ATPase domain-like 97 c3eebB_ not modelled 14.6 25 PDB header:toxin Chain: B: PDB Molecule:rtx toxin rtxa; PDBTitle: structure of the v. cholerae rtx cysteine protease domain 98 c3mc3A_ not modelled 14.5 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:dsre/dsrf-like family protein; PDBTitle: crystal structure of dsre/dsrf-like family protein (np_342589.1) from2 sulfolobus solfataricus at 1.49 a resolution 99 d1wsaa_ not modelled 14.3 24 Fold:Glutaminase/Asparaginase Superfamily:Glutaminase/Asparaginase Family:Glutaminase/Asparaginase

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0