Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	T	G	S	Q	V	I	D	A	E	E	D	R	H	K	L	V	V	E	Y	K	D	A	L	Q	P	A	D	F	Y	H	N	F	K	Q	R	G	I	R	S	V	Q	L	I	P	Y	L	E	F	D	D	R	G	D	L	T	A	A	S	V
Secondary structure
SS confidence
Disorder		?	?																																																	?	?	?	?	?	?	?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		T	A	E	L	W	G	K	F	L	I	A	L	F	E	C	W	V	R	A	D	I	S	R	I	S	I	E	L	F	D	A	T	L	Q	K	W	C	G	S	E	N	P	Q	P	R	C	D	C	Q	A	C	D	W	H	R	L	C	P	H	A
Secondary structure
SS confidence
Disorder																																											?	?	?	?															?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
Sequence		R	Q	E	T	P	D	S	V	L	C	A	G	Y	Q	A	F	Y	S	Y	S	A	P	H	M	R	V	M	R	D	L	I	K	Q	H	R	S	P	M	E	L	M	T	M	L	R
Secondary structure
SS confidence
Disorder		?		?		?		?																										?											?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1tv8 chain A Region: 1 - 74 Aligned: 73 Modelled: 74 Confidence: 82.0% Identity: 18% Fold: TIM beta/alpha-barrel Superfamily: Radical SAM enzymes Family: MoCo biosynthesis proteins Phyre2 PDB 1g5a chain A domain 2 Region: 31 - 61 Aligned: 31 Modelled: 31 Confidence: 57.3% Identity: 16% Fold: TIM beta/alpha-barrel Superfamily: (Trans)glycosidases Family: Amylase, catalytic domain Phyre2 PDB 3k1d chain A Region: 26 - 72 Aligned: 47 Modelled: 47 Confidence: 52.4% Identity: 23% PDB header:transferase Chain: A: PDB Molecule:1,4-alpha-glucan-branching enzyme; PDBTitle: crystal structure of glycogen branching enzyme synonym: 1,4-alpha-d-2 glucan:1,4-alpha-d-glucan 6-glucosyl-transferase from mycobacterium3 tuberculosis h37rv Phyre2 PDB 2kgr chain A Region: 53 - 94 Aligned: 41 Modelled: 42 Confidence: 51.0% Identity: 12% PDB header:protein binding Chain: A: PDB Molecule:intersectin-1; PDBTitle: solution structure of protein itsn1 from homo sapiens.2 northeast structural genomics consortium target hr5524a Phyre2 PDB 3amk chain A Region: 26 - 72 Aligned: 47 Modelled: 47 Confidence: 49.1% Identity: 17% PDB header:transferase Chain: A: PDB Molecule:os06g0726400 protein; PDBTitle: structure of the starch branching enzyme i (bei) from oryza sativa l Phyre2 PDB 1jgi chain A Region: 31 - 61 Aligned: 31 Modelled: 31 Confidence: 49.1% Identity: 16% PDB header:transferase Chain: A: PDB Molecule:amylosucrase; PDBTitle: crystal structure of the active site mutant glu328gln of2 amylosucrase from neisseria polysaccharea in complex with3 the natural substrate sucrose Phyre2 PDB 2fhf chain A Region: 31 - 82 Aligned: 52 Modelled: 52 Confidence: 48.8% Identity: 8% PDB header:hydrolase Chain: A: PDB Molecule:pullulanase; PDBTitle: crystal structure analysis of klebsiella pneumoniae2 pullulanase complexed with maltotetraose Phyre2 PDB 3aml chain A Region: 26 - 72 Aligned: 47 Modelled: 47 Confidence: 44.5% Identity: 17% PDB header:transferase Chain: A: PDB Molecule:os06g0726400 protein; PDBTitle: structure of the starch branching enzyme i (bei) from oryza sativa l Phyre2 PDB 1tz7 chain A domain 1 Region: 31 - 59 Aligned: 29 Modelled: 29 Confidence: 42.3% Identity: 17% Fold: TIM beta/alpha-barrel Superfamily: (Trans)glycosidases Family: Amylase, catalytic domain Phyre2 PDB 3czk chain A Region: 31 - 61 Aligned: 31 Modelled: 31 Confidence: 40.7% Identity: 19% PDB header:hydrolase Chain: A: PDB Molecule:sucrose hydrolase; PDBTitle: crystal structure analysis of sucrose hydrolase(suh) e322q-2 sucrose complex Phyre2 PDB 3ucq chain A Region: 31 - 61 Aligned: 31 Modelled: 31 Confidence: 39.8% Identity: 16% PDB header:transferase Chain: A: PDB Molecule:amylosucrase; PDBTitle: crystal structure of amylosucrase from deinococcus geothermalis Phyre2 PDB 3fax chain A Region: 31 - 49 Aligned: 19 Modelled: 19 Confidence: 36.3% Identity: 26% PDB header:hydrolase Chain: A: PDB Molecule:reticulocyte binding protein; PDBTitle: the crystal structure of gbs pullulanase sap in complex with2 maltotetraose Phyre2 PDB 3l51 chain B Region: 3 - 96 Aligned: 92 Modelled: 94 Confidence: 35.6% Identity: 13% PDB header:cell cycle Chain: B: PDB Molecule:structural maintenance of chromosomes protein 4; PDBTitle: crystal structure of the mouse condensin hinge domain Phyre2 PDB 2obb chain A domain 1 Region: 3 - 40 Aligned: 38 Modelled: 38 Confidence: 35.3% Identity: 11% Fold: HAD-like Superfamily: HAD-like Family: BT0820-like Phyre2 PDB 2aaa chain A domain 2 Region: 31 - 59 Aligned: 29 Modelled: 29 Confidence: 34.9% Identity: 10% Fold: TIM beta/alpha-barrel Superfamily: (Trans)glycosidases Family: Amylase, catalytic domain Phyre2 PDB 2ya1 chain A Region: 31 - 48 Aligned: 18 Modelled: 18 Confidence: 34.4% Identity: 33% PDB header:hydrolase Chain: A: PDB Molecule:putative alkaline amylopullulanase; PDBTitle: product complex of a multi-modular glycogen-degrading2 pneumococcal virulence factor spua Phyre2 PDB 3eyi chain B Region: 24 - 38 Aligned: 15 Modelled: 15 Confidence: 33.9% Identity: 27% PDB header:dna binding protein/dna Chain: B: PDB Molecule:z-dna-binding protein 1; PDBTitle: the crystal structure of the second z-dna binding domain of2 human dai (zbp1) in complex with z-dna Phyre2 PDB 1gjw chain A domain 2 Region: 31 - 59 Aligned: 29 Modelled: 29 Confidence: 33.9% Identity: 21% Fold: TIM beta/alpha-barrel Superfamily: (Trans)glycosidases Family: Amylase, catalytic domain Phyre2 PDB 1iq3 chain A Region: 47 - 93 Aligned: 46 Modelled: 47 Confidence: 33.5% Identity: 15% Fold: EF Hand-like Superfamily: EF-hand Family: Eps15 homology domain (EH domain) Phyre2 PDB 2e8y chain A Region: 31 - 48 Aligned: 18 Modelled: 18 Confidence: 33.3% Identity: 28% PDB header:hydrolase Chain: A: PDB Molecule:amyx protein; PDBTitle: crystal structure of pullulanase type i from bacillus subtilis str.2 168 Phyre2 1 d1tv8a_ 2 d1g5aa2 3 c3k1dA_ 4 c2kgrA_ 5 c3amkA_ 6 c1jgiA_ 7 c2fhfA_ 8 c3amlA_ 9 d1tz7a1 10 c3czkA_ 11 c3ucqA_ 12 c3faxA_ 13 c3l51B_ 14 d2obba1 15 d2aaaa2 16 c2ya1A_ 17 c3eyiB_ 18 d1gjwa2 19 d1iq3a_ 20 c2e8yA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1tv8a_ 82.0 18 Fold:TIM beta/alpha-barrel Superfamily:Radical SAM enzymes Family:MoCo biosynthesis proteins 2 d1g5aa2 57.3 16 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 3 c3k1dA_ 52.4 23 PDB header:transferase Chain: A: PDB Molecule:1,4-alpha-glucan-branching enzyme; PDBTitle: crystal structure of glycogen branching enzyme synonym: 1,4-alpha-d-2 glucan:1,4-alpha-d-glucan 6-glucosyl-transferase from mycobacterium3 tuberculosis h37rv 4 c2kgrA_ 51.0 12 PDB header:protein binding Chain: A: PDB Molecule:intersectin-1; PDBTitle: solution structure of protein itsn1 from homo sapiens.2 northeast structural genomics consortium target hr5524a 5 c3amkA_ 49.1 17 PDB header:transferase Chain: A: PDB Molecule:os06g0726400 protein; PDBTitle: structure of the starch branching enzyme i (bei) from oryza sativa l 6 c1jgiA_ 49.1 16 PDB header:transferase Chain: A: PDB Molecule:amylosucrase; PDBTitle: crystal structure of the active site mutant glu328gln of2 amylosucrase from neisseria polysaccharea in complex with3 the natural substrate sucrose 7 c2fhfA_ 48.8 8 PDB header:hydrolase Chain: A: PDB Molecule:pullulanase; PDBTitle: crystal structure analysis of klebsiella pneumoniae2 pullulanase complexed with maltotetraose 8 c3amlA_ 44.5 17 PDB header:transferase Chain: A: PDB Molecule:os06g0726400 protein; PDBTitle: structure of the starch branching enzyme i (bei) from oryza sativa l 9 d1tz7a1 42.3 17 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 10 c3czkA_ 40.7 19 PDB header:hydrolase Chain: A: PDB Molecule:sucrose hydrolase; PDBTitle: crystal structure analysis of sucrose hydrolase(suh) e322q-2 sucrose complex 11 c3ucqA_ 39.8 16 PDB header:transferase Chain: A: PDB Molecule:amylosucrase; PDBTitle: crystal structure of amylosucrase from deinococcus geothermalis 12 c3faxA_ 36.3 26 PDB header:hydrolase Chain: A: PDB Molecule:reticulocyte binding protein; PDBTitle: the crystal structure of gbs pullulanase sap in complex with2 maltotetraose 13 c3l51B_ 35.6 13 PDB header:cell cycle Chain: B: PDB Molecule:structural maintenance of chromosomes protein 4; PDBTitle: crystal structure of the mouse condensin hinge domain 14 d2obba1 35.3 11 Fold:HAD-like Superfamily:HAD-like Family:BT0820-like 15 d2aaaa2 34.9 10 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 16 c2ya1A_ 34.4 33 PDB header:hydrolase Chain: A: PDB Molecule:putative alkaline amylopullulanase; PDBTitle: product complex of a multi-modular glycogen-degrading2 pneumococcal virulence factor spua 17 c3eyiB_ 33.9 27 PDB header:dna binding protein/dna Chain: B: PDB Molecule:z-dna-binding protein 1; PDBTitle: the crystal structure of the second z-dna binding domain of2 human dai (zbp1) in complex with z-dna 18 d1gjwa2 33.9 21 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 19 d1iq3a_ 33.5 15 Fold:EF Hand-like Superfamily:EF-hand Family:Eps15 homology domain (EH domain) 20 c2e8yA_ 33.3 28 PDB header:hydrolase Chain: A: PDB Molecule:amyx protein; PDBTitle: crystal structure of pullulanase type i from bacillus subtilis str.2 168 21 c1bf2A_ not modelled 32.3 21 PDB header:hydrolase Chain: A: PDB Molecule:isoamylase; PDBTitle: structure of pseudomonas isoamylase 22 c2wanA_ not modelled 32.2 33 PDB header:hydrolase Chain: A: PDB Molecule:pullulanase; PDBTitle: pullulanase from bacillus acidopullulyticus 23 d1fi6a_ not modelled 28.1 13 Fold:EF Hand-like Superfamily:EF-hand Family:Eps15 homology domain (EH domain) 24 c2wd5A_ not modelled 25.6 9 PDB header:cell cycle Chain: A: PDB Molecule:structural maintenance of chromosomes protein 1a; PDBTitle: smc hinge heterodimer (mouse) 25 c2ya0A_ not modelled 24.1 32 PDB header:hydrolase Chain: A: PDB Molecule:putative alkaline amylopullulanase; PDBTitle: catalytic module of the multi-modular glycogen-degrading2 pneumococcal virulence factor spua 26 c2vncB_ not modelled 23.9 29 PDB header:hydrolase Chain: B: PDB Molecule:glycogen operon protein glgx; PDBTitle: crystal structure of glycogen debranching enzyme trex from2 sulfolobus solfataricus 27 c3m07A_ not modelled 23.0 19 PDB header:unknown function Chain: A: PDB Molecule:putative alpha amylase; PDBTitle: 1.4 angstrom resolution crystal structure of putative alpha2 amylase from salmonella typhimurium. 28 c1bagA_ not modelled 22.9 14 PDB header:alpha-amylase Chain: A: PDB Molecule:alpha-1,4-glucan-4-glucanohydrolase; PDBTitle: alpha-amylase from bacillus subtilis complexed with2 maltopentaose 29 d1eg3a1 not modelled 22.6 17 Fold:EF Hand-like Superfamily:EF-hand Family:EF-hand modules in multidomain proteins 30 c3rh3A_ not modelled 22.2 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized duf3829-like protein; PDBTitle: crystal structure of an uncharacterized duf3829-like protein (bt_1908)2 from bacteroides thetaiotaomicron vpi-5482 at 2.10 a resolution 31 d1bf2a3 not modelled 21.9 17 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 32 d1br1b_ not modelled 21.5 11 Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like 33 c2wskA_ not modelled 21.4 27 PDB header:hydrolase Chain: A: PDB Molecule:glycogen debranching enzyme; PDBTitle: crystal structure of glycogen debranching enzyme glgx from2 escherichia coli k-12 34 c1gjuA_ not modelled 21.3 21 PDB header:transferase Chain: A: PDB Molecule:maltodextrin glycosyltransferase; PDBTitle: maltosyltransferase from thermotoga maritima 35 d1ugla_ not modelled 20.2 57 Fold:Knottins (small inhibitors, toxins, lectins) Superfamily:Scorpion toxin-like Family:Plant defensins 36 d1mxga2 not modelled 19.4 17 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 37 d1ibia1 not modelled 19.2 26 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 38 d1ua7a2 not modelled 19.2 13 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 39 c2x4bA_ not modelled 19.2 21 PDB header:hydrolase Chain: A: PDB Molecule:limit dextrinase; PDBTitle: barley limit dextrinase in complex with beta-cyclodextrin 40 d1m7xa3 not modelled 18.9 22 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 41 d1vlia2 not modelled 18.6 7 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:NeuB-like 42 d1avaa2 not modelled 18.4 29 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 43 c3fmfA_ not modelled 18.0 15 PDB header:ligase Chain: A: PDB Molecule:dethiobiotin synthetase; PDBTitle: crystal structure of mycobacterium tuberculosis dethiobiotin2 synthetase complexed with 7,8 diaminopelargonic acid carbamate 44 d1cyga4 not modelled 17.9 14 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 45 c2taaA_ not modelled 17.3 13 PDB header:hydrolase (o-glycosyl) Chain: A: PDB Molecule:taka-amylase a; PDBTitle: structure and possible catalytic residues of taka-amylase a 46 d2bvca1 not modelled 17.2 21 Fold:beta-Grasp (ubiquitin-like) Superfamily:Glutamine synthetase, N-terminal domain Family:Glutamine synthetase, N-terminal domain 47 c1m7xC_ not modelled 17.2 20 PDB header:transferase Chain: C: PDB Molecule:1,4-alpha-glucan branching enzyme; PDBTitle: the x-ray crystallographic structure of branching enzyme 48 c2k7bA_ not modelled 17.1 13 PDB header:metal binding protein Chain: A: PDB Molecule:calcium-binding protein 1; PDBTitle: nmr structure of mg2+-bound cabp1 n-domain 49 c2by0A_ not modelled 16.6 23 PDB header:hydrolase Chain: A: PDB Molecule:maltooligosyltrehalose trehalohydrolase; PDBTitle: is radiation damage dependent on the dose-rate used during2 macromolecular crystallography data collection 50 c2amiA_ not modelled 16.4 11 PDB header:cell cycle Chain: A: PDB Molecule:caltractin; PDBTitle: solution structure of the calcium-loaded n-terminal sensor2 domain of centrin 51 c1jaeA_ not modelled 15.9 15 PDB header:glycosidase Chain: A: PDB Molecule:alpha-amylase; PDBTitle: structure of tenebrio molitor larval alpha-amylase 52 d2fhfa5 not modelled 15.8 13 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 53 d2guya2 not modelled 15.8 7 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 54 c3edeB_ not modelled 15.4 17 PDB header:hydrolase Chain: B: PDB Molecule:cyclomaltodextrinase; PDBTitle: structural base for cyclodextrin hydrolysis 55 d2r7ca1 not modelled 15.3 22 Fold:HIT-like Superfamily:Rotavirus NSP2 fragment, C-terminal domain Family:Rotavirus NSP2 fragment, C-terminal domain 56 c1jd7A_ not modelled 15.0 13 PDB header:hydrolase Chain: A: PDB Molecule:alpha-amylase; PDBTitle: crystal structure analysis of the mutant k300r of2 pseudoalteromonas haloplanctis alpha-amylase 57 c3sibA_ not modelled 14.9 9 PDB header:dna binding protein Chain: A: PDB Molecule:ure3-bp sequence specific dna binding protein; PDBTitle: crystal structure of ure3-binding protein, wild-type 58 d1h3ga3 not modelled 14.9 16 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 59 c1gviA_ not modelled 14.9 17 PDB header:hydrolase Chain: A: PDB Molecule:maltogenic amylase; PDBTitle: thermus maltogenic amylase in complex with beta-cd 60 d1v95a_ not modelled 14.5 13 Fold:Anticodon-binding domain-like Superfamily:Class II aaRS ABD-related Family:Anticodon-binding domain of Class II aaRS 61 c3nwcA_ not modelled 14.2 24 PDB header:cell cycle Chain: A: PDB Molecule:smc protein; PDBTitle: crystal structure of the pyrococcus furiosus smc protein hinge domain 62 c2k7cA_ not modelled 14.1 18 PDB header:metal binding protein Chain: A: PDB Molecule:calcium-binding protein 1; PDBTitle: nmr structure of mg2+-bound cabp1 c-domain 63 d1u1ha2 not modelled 13.8 15 Fold:TIM beta/alpha-barrel Superfamily:UROD/MetE-like Family:Cobalamin-independent methionine synthase 64 d1c07a_ not modelled 13.7 11 Fold:EF Hand-like Superfamily:EF-hand Family:Eps15 homology domain (EH domain) 65 c3dhuC_ not modelled 13.4 13 PDB header:hydrolase Chain: C: PDB Molecule:alpha-amylase; PDBTitle: crystal structure of an alpha-amylase from lactobacillus2 plantarum 66 c2fcdA_ not modelled 13.1 11 PDB header:cell cycle Chain: A: PDB Molecule:myosin light chain 1; PDBTitle: solution structure of n-lobe myosin light chain from2 saccharomices cerevisiae 67 c1lwhA_ not modelled 13.0 23 PDB header:transferase Chain: A: PDB Molecule:4-alpha-glucanotransferase; PDBTitle: crystal structure of t. maritima 4-alpha-glucanotransferase 68 c2dh3A_ not modelled 13.0 11 PDB header:transport protein, signaling protein Chain: A: PDB Molecule:4f2 cell-surface antigen heavy chain; PDBTitle: crystal structure of human ed-4f2hc 69 c1e40A_ not modelled 12.8 21 PDB header:hydrolase Chain: A: PDB Molecule:alpha-amylase; PDBTitle: tris/maltotriose complex of chimaeric amylase from b.2 amyloliquefaciens and b. licheniformis at 2.2a 70 c1ehaA_ not modelled 12.6 20 PDB header:hydrolase Chain: A: PDB Molecule:glycosyltrehalose trehalohydrolase; PDBTitle: crystal structure of glycosyltrehalose trehalohydrolase2 from sulfolobus solfataricus 71 c1mwoA_ not modelled 12.5 17 PDB header:hydrolase Chain: A: PDB Molecule:alpha amylase; PDBTitle: crystal structure analysis of the hyperthermostable2 pyrocoocus woesei alpha-amylase 72 c1ea9D_ not modelled 12.5 14 PDB header:hydrolase Chain: D: PDB Molecule:cyclomaltodextrinase; PDBTitle: cyclomaltodextrinase 73 d1ea9c3 not modelled 12.4 14 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 74 d1x1na1 not modelled 12.3 24 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 75 d1w7jb1 not modelled 12.2 14 Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like 76 d1gvia3 not modelled 12.1 13 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 77 c2bl0B_ not modelled 12.1 18 PDB header:muscle protein Chain: B: PDB Molecule:myosin regulatory light chain; PDBTitle: physarum polycephalum myosin ii regulatory domain 78 c3l7sA_ not modelled 11.8 14 PDB header:transferase Chain: A: PDB Molecule:5-methyltetrahydropteroyltriglutamate--homocysteine PDBTitle: crystal structure of mete coordinated with zinc from streptococcus2 mutans 79 c2wcsA_ not modelled 11.8 13 PDB header:hydrolase Chain: A: PDB Molecule:alpha amylase, catalytic region; PDBTitle: crystal structure of debranching enzyme from nostoc2 punctiforme (npde) 80 d1uoka2 not modelled 11.6 26 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 81 c1jibA_ not modelled 11.3 10 PDB header:hydrolase Chain: A: PDB Molecule:neopullulanase; PDBTitle: complex of alpha-amylase ii (tva ii) from thermoactinomyces2 vulgaris r-47 with maltotetraose based on a crystal soaked3 with maltohexaose. 82 d1lwha2 not modelled 11.0 25 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 83 c2aaaA_ not modelled 11.0 10 PDB header:glycosidase Chain: A: PDB Molecule:alpha-amylase; PDBTitle: calcium binding in alpha-amylases: an x-ray diffraction2 study at 2.1 angstroms resolution of two enzymes from3 aspergillus 84 c3ghgD_ not modelled 10.9 19 PDB header:blood clotting Chain: D: PDB Molecule:fibrinogen alpha chain; PDBTitle: crystal structure of human fibrinogen 85 d2cuja1 not modelled 10.9 13 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:SWIRM domain 86 d1j0ha3 not modelled 10.9 17 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 87 d1wzla3 not modelled 10.7 10 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 88 d1tn4a_ not modelled 10.7 14 Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like 89 d1qhoa4 not modelled 10.5 28 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 90 d1eswa_ not modelled 10.5 26 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 91 c3ogzA_ not modelled 10.3 10 PDB header:transferase Chain: A: PDB Molecule:udp-sugar pyrophosphorylase; PDBTitle: protein structure of usp from l. major in apo-form 92 c3p09A_ not modelled 10.3 12 PDB header:hydrolase Chain: A: PDB Molecule:beta-lactamase; PDBTitle: crystal structure of beta-lactamase from francisella tularensis 93 c3blpX_ not modelled 10.2 13 PDB header:hydrolase Chain: X: PDB Molecule:alpha-amylase 1; PDBTitle: role of aromatic residues in human salivary alpha-amylase 94 d2b4jc1 not modelled 10.1 14 Fold:N-cbl like Superfamily:HIV integrase-binding domain Family:HIV integrase-binding domain 95 c2jmiA_ not modelled 10.1 30 PDB header:protein binding Chain: A: PDB Molecule:protein yng1; PDBTitle: nmr solution structure of phd finger fragment of yeast yng12 protein in free state 96 c3ey5A_ not modelled 10.0 13 PDB header:transferase Chain: A: PDB Molecule:acetyltransferase-like, gnat family; PDBTitle: putative acetyltransferase from gnat family from bacteroides2 thetaiotaomicron. 97 c2jmlA_ not modelled 9.9 18 PDB header:transcription Chain: A: PDB Molecule:dna binding domain/transcriptional regulator; PDBTitle: solution structure of the n-terminal domain of cara repressor 98 c2xtdB_ not modelled 9.9 17 PDB header:transcription Chain: B: PDB Molecule:tbl1 f-box-like/wd repeat-containing protein tbl1x; PDBTitle: structure of the tbl1 tetramerisation domain 99 c2yx0A_ not modelled 9.8 12 PDB header:metal binding protein Chain: A: PDB Molecule:radical sam enzyme; PDBTitle: crystal structure of p. horikoshii tyw1

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0