Email l.a.kelley@imperial.ac.uk Description P04395 Date Thu Jan 5 10:58:16 GMT 2012 Unique Job ID 420c3f054521f2a0

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1mpgB_ 100.0 100 PDB header:hydrolase Chain: B: PDB Molecule:3-methyladenine dna glycosylase ii; PDBTitle: 3-methyladenine dna glycosylase ii from escherichia coli 2 c2jhnB_ 100.0 23 PDB header:hydrolase Chain: B: PDB Molecule:3-methyladenine dna-glycosylase; PDBTitle: 3-methyladenine dna-glycosylase from archaeoglobus fulgidus 3 d1mpga1 100.0 100 Fold:DNA-glycosylase Superfamily:DNA-glycosylase Family:DNA repair glycosylase, 2 C-terminal domains 4 c3f10A_ 100.0 21 PDB header:hydrolase, lyase Chain: A: PDB Molecule:8-oxoguanine-dna-glycosylase; PDBTitle: crystal structure of clostridium acetobutylicum 8-2 oxoguanine dna glycosylase in complex with 8-oxoguanosine 5 c1yqmA_ 100.0 22 PDB header:hydrolase/dna Chain: A: PDB Molecule:n-glycosylase/dna lyase; PDBTitle: catalytically inactive human 8-oxoguanine glycosylase2 crosslinked to 7-deazaguanine containing dna 6 c2yg8B_ 100.0 27 PDB header:hydrolase Chain: B: PDB Molecule:dna-3-methyladenine glycosidase ii, putative; PDBTitle: structure of an unusual 3-methyladenine dna glycosylase ii (2 alka) from deinococcus radiodurans 7 c1ko9A_ 100.0 21 PDB header:hydrolase Chain: A: PDB Molecule:8-oxoguanine dna glycosylase; PDBTitle: native structure of the human 8-oxoguanine dna glycosylase2 hogg1 8 c3s6iA_ 100.0 23 PDB header:hydrolase/dna Chain: A: PDB Molecule:dna-3-methyladenine glycosylase 1; PDBTitle: schizosaccaromyces pombe 3-methyladenine dna glycosylase (mag1) in2 complex with abasic-dna. 9 c2h56C_ 100.0 22 PDB header:hydrolase Chain: C: PDB Molecule:dna-3-methyladenine glycosidase; PDBTitle: crystal structure of dna-3-methyladenine glycosidase (10174367) from2 bacillus halodurans at 2.55 a resolution 10 d2noha1 100.0 23 Fold:DNA-glycosylase Superfamily:DNA-glycosylase Family:DNA repair glycosylase, 2 C-terminal domains 11 c3fhgA_ 100.0 19 PDB header:dna repair, hydrolase, lyase Chain: A: PDB Molecule:n-glycosylase/dna lyase; PDBTitle: crystal structure of sulfolobus solfataricus 8-oxoguanine dna2 glycosylase (ssogg) 12 c3kntC_ 100.0 18 PDB header:hydrolase, lyase/dna Chain: C: PDB Molecule:n-glycosylase/dna lyase; PDBTitle: crystal structure of methanocaldococcus jannaschii 8-2 oxoguanine glycosylase/lyase in complex with 15mer dna3 containing 8-oxoguanine 13 d1orna_ 100.0 19 Fold:DNA-glycosylase Superfamily:DNA-glycosylase Family:Endonuclease III 14 d1pu6a_ 99.9 18 Fold:DNA-glycosylase Superfamily:DNA-glycosylase Family:3-Methyladenine DNA glycosylase III (MagIII) 15 d2abka_ 99.9 22 Fold:DNA-glycosylase Superfamily:DNA-glycosylase Family:Endonuclease III 16 d1mpga2 99.9 100 Fold:TBP-like Superfamily:TATA-box binding protein-like Family:DNA repair glycosylase, N-terminal domain 17 c3n0uB_ 99.9 22 PDB header:hydrolase, lyase Chain: B: PDB Molecule:probable n-glycosylase/dna lyase; PDBTitle: crystal structure of tm1821, the 8-oxoguanine dna glycosylase of2 thermotoga maritima 18 d1ngna_ 99.9 21 Fold:DNA-glycosylase Superfamily:DNA-glycosylase Family:Mismatch glycosylase 19 d1keaa_ 99.9 19 Fold:DNA-glycosylase Superfamily:DNA-glycosylase Family:Mismatch glycosylase 20 d1rrqa1 99.9 17 Fold:DNA-glycosylase Superfamily:DNA-glycosylase Family:Mismatch glycosylase 21 d1kg2a_ not modelled 99.9 20 Fold:DNA-glycosylase Superfamily:DNA-glycosylase Family:Mismatch glycosylase 22 c3n5nX_ not modelled 99.8 23 PDB header:hydrolase Chain: X: PDB Molecule:a/g-specific adenine dna glycosylase; PDBTitle: crystal structure analysis of the catalytic domain and interdomain2 connector of human muty homologue 23 c1rrqA_ not modelled 99.8 17 PDB header:hydrolase/dna Chain: A: PDB Molecule:muty; PDBTitle: muty adenine glycosylase in complex with dna containing an2 a:oxog pair 24 d2noha2 not modelled 96.9 15 Fold:TBP-like Superfamily:TATA-box binding protein-like Family:DNA repair glycosylase, N-terminal domain 25 c2bcuA_ not modelled 94.4 18 PDB header:transferase, lyase/dna Chain: A: PDB Molecule:dna polymerase lambda; PDBTitle: dna polymerase lambda in complex with a dna duplex2 containing an unpaired damp and a t:t mismatch 26 d1vdda_ not modelled 94.3 23 Fold:Recombination protein RecR Superfamily:Recombination protein RecR Family:Recombination protein RecR 27 c1vddC_ not modelled 94.1 23 PDB header:recombination Chain: C: PDB Molecule:recombination protein recr; PDBTitle: crystal structure of recombinational repair protein recr 28 c2ihmA_ not modelled 94.0 20 PDB header:transferase/dna Chain: A: PDB Molecule:dna polymerase mu; PDBTitle: polymerase mu in ternary complex with gapped 11mer dna2 duplex and bound incoming nucleotide 29 c2h5xA_ not modelled 93.4 28 PDB header:dna binding protein Chain: A: PDB Molecule:holliday junction atp-dependent dna helicase ruva; PDBTitle: ruva from mycobacterium tuberculosis 30 c1d8lA_ not modelled 93.3 31 PDB header:gene regulation Chain: A: PDB Molecule:protein (holliday junction dna helicase ruva); PDBTitle: e. coli holliday junction binding protein ruva nh2 region2 lacking domain iii 31 c2csdB_ not modelled 93.3 20 PDB header:isomerase Chain: B: PDB Molecule:topoisomerase v; PDBTitle: crystal structure of topoisomerase v (61 kda fragment) 32 c1ixrA_ not modelled 93.0 51 PDB header:hydrolase Chain: A: PDB Molecule:holliday junction dna helicase ruva; PDBTitle: ruva-ruvb complex 33 c8iczA_ not modelled 93.0 21 PDB header:transferase/dna Chain: A: PDB Molecule:protein (dna polymerase beta (e.c.2.7.7.7)); PDBTitle: dna polymerase beta (pol b) (e.c.2.7.7.7) complexed with2 seven base pairs of dna; soaked in the presence of of datp3 (1 millimolar), mncl2 (5 millimolar), and lithium sulfate4 (75 millimolar) 34 d1ixra1 not modelled 92.5 51 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:DNA helicase RuvA subunit, middle domain 35 d1bvsa2 not modelled 92.2 37 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:DNA helicase RuvA subunit, middle domain 36 c1kdhA_ not modelled 92.1 11 PDB header:transferase/dna Chain: A: PDB Molecule:terminal deoxynucleotidyltransferase short PDBTitle: binary complex of murine terminal deoxynucleotidyl2 transferase with a primer single stranded dna 37 d1cuka2 not modelled 91.0 21 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:DNA helicase RuvA subunit, middle domain 38 d2bcqa1 not modelled 90.1 22 Fold:SAM domain-like Superfamily:DNA polymerase beta, N-terminal domain-like Family:DNA polymerase beta, N-terminal domain-like 39 d2fmpa1 not modelled 89.5 14 Fold:SAM domain-like Superfamily:DNA polymerase beta, N-terminal domain-like Family:DNA polymerase beta, N-terminal domain-like 40 d1jmsa1 not modelled 89.2 16 Fold:SAM domain-like Superfamily:DNA polymerase beta, N-terminal domain-like Family:DNA polymerase beta, N-terminal domain-like 41 d1dgsa1 not modelled 88.8 20 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:NAD+-dependent DNA ligase, domain 3 42 d2bgwa1 not modelled 88.7 25 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Hef domain-like 43 c1hjpA_ not modelled 88.0 24 PDB header:dna recombination Chain: A: PDB Molecule:ruva; PDBTitle: holliday junction binding protein ruva from e. coli 44 c1nomA_ not modelled 86.9 30 PDB header:nucleotidyltransferase Chain: A: PDB Molecule:dna polymerase beta; PDBTitle: dna polymerase beta (pol b) (e.c.2.7.7.7), 31-kd domain; soaked in the2 presence of mncl2 (5 millimolar) 45 d2i1qa1 not modelled 86.5 22 Fold:SAM domain-like Superfamily:Rad51 N-terminal domain-like Family:DNA repair protein Rad51, N-terminal domain 46 d1szpa1 not modelled 85.9 22 Fold:SAM domain-like Superfamily:Rad51 N-terminal domain-like Family:DNA repair protein Rad51, N-terminal domain 47 d1x2ia1 not modelled 85.8 10 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Hef domain-like 48 d1nzpa_ not modelled 84.8 27 Fold:SAM domain-like Superfamily:DNA polymerase beta, N-terminal domain-like Family:DNA polymerase beta, N-terminal domain-like 49 d1pzna1 not modelled 82.4 28 Fold:SAM domain-like Superfamily:Rad51 N-terminal domain-like Family:DNA repair protein Rad51, N-terminal domain 50 d1kfta_ not modelled 82.1 12 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Excinuclease UvrC C-terminal domain 51 c1kftA_ not modelled 82.1 12 PDB header:dna binding protein Chain: A: PDB Molecule:excinuclease abc subunit c; PDBTitle: solution structure of the c-terminal domain of uvrc from e-2 coli 52 c1dgsB_ not modelled 82.0 27 PDB header:ligase Chain: B: PDB Molecule:dna ligase; PDBTitle: crystal structure of nad+-dependent dna ligase from t.2 filiformis 53 c2owoA_ not modelled 81.7 29 PDB header:ligase/dna Chain: A: PDB Molecule:dna ligase; PDBTitle: last stop on the road to repair: structure of e.coli dna ligase bound2 to nicked dna-adenylate 54 c2w9mB_ not modelled 81.6 19 PDB header:dna replication Chain: B: PDB Molecule:polymerase x; PDBTitle: structure of family x dna polymerase from deinococcus2 radiodurans 55 d1dk2a_ not modelled 81.0 16 Fold:SAM domain-like Superfamily:DNA polymerase beta, N-terminal domain-like Family:DNA polymerase beta, N-terminal domain-like 56 d2fmpa2 not modelled 80.7 25 Fold:SAM domain-like Superfamily:PsbU/PolX domain-like Family:DNA polymerase beta-like, second domain 57 d2bcqa2 not modelled 79.9 17 Fold:SAM domain-like Superfamily:PsbU/PolX domain-like Family:DNA polymerase beta-like, second domain 58 d2a1jb1 not modelled 79.8 12 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Hef domain-like 59 d2edua1 not modelled 79.3 22 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:ComEA-like 60 d2aq0a1 not modelled 78.9 14 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Hef domain-like 61 d2axtu1 not modelled 78.3 13 Fold:SAM domain-like Superfamily:PsbU/PolX domain-like Family:PsbU-like 62 c1v9pB_ not modelled 77.8 27 PDB header:ligase Chain: B: PDB Molecule:dna ligase; PDBTitle: crystal structure of nad+-dependent dna ligase 63 d1jmsa3 not modelled 77.4 21 Fold:SAM domain-like Superfamily:PsbU/PolX domain-like Family:DNA polymerase beta-like, second domain 64 d2vana1 not modelled 77.1 22 Fold:SAM domain-like Superfamily:PsbU/PolX domain-like Family:DNA polymerase beta-like, second domain 65 d2csba3 not modelled 73.7 32 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Topoisomerase V repeat domain 66 c1s5lu_ not modelled 73.7 15 PDB header:photosynthesis Chain: U: PDB Molecule:photosystem ii 12 kda extrinsic protein; PDBTitle: architecture of the photosynthetic oxygen evolving center 67 d1mc8a1 not modelled 73.6 44 Fold:SAM domain-like Superfamily:5' to 3' exonuclease, C-terminal subdomain Family:5' to 3' exonuclease, C-terminal subdomain 68 d1a77a1 not modelled 73.6 31 Fold:SAM domain-like Superfamily:5' to 3' exonuclease, C-terminal subdomain Family:5' to 3' exonuclease, C-terminal subdomain 69 d3bzka1 not modelled 73.0 18 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Tex HhH-containing domain-like 70 d2duya1 not modelled 72.2 32 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:ComEA-like 71 d2hkja1 not modelled 71.6 26 Fold:S13-like H2TH domain Superfamily:S13-like H2TH domain Family:Topoisomerase VI-B subunit middle domain 72 d1b43a1 not modelled 71.5 44 Fold:SAM domain-like Superfamily:5' to 3' exonuclease, C-terminal subdomain Family:5' to 3' exonuclease, C-terminal subdomain 73 c1b22A_ not modelled 71.1 22 PDB header:dna binding protein Chain: A: PDB Molecule:dna repair protein rad51; PDBTitle: rad51 (n-terminal domain) 74 d1b22a_ not modelled 71.1 22 Fold:SAM domain-like Superfamily:Rad51 N-terminal domain-like Family:DNA repair protein Rad51, N-terminal domain 75 d1szpb1 not modelled 70.0 22 Fold:SAM domain-like Superfamily:Rad51 N-terminal domain-like Family:DNA repair protein Rad51, N-terminal domain 76 d1ee8a1 not modelled 69.7 19 Fold:S13-like H2TH domain Superfamily:S13-like H2TH domain Family:Middle domain of MutM-like DNA repair proteins 77 c2kp7A_ not modelled 69.1 12 PDB header:hydrolase Chain: A: PDB Molecule:crossover junction endonuclease mus81; PDBTitle: solution nmr structure of the mus81 n-terminal hhh.2 northeast structural genomics consortium target mmt1a 78 d1lb2b_ not modelled 67.7 17 Fold:SAM domain-like Superfamily:C-terminal domain of RNA polymerase alpha subunit Family:C-terminal domain of RNA polymerase alpha subunit 79 d1rxwa1 not modelled 67.4 21 Fold:SAM domain-like Superfamily:5' to 3' exonuclease, C-terminal subdomain Family:5' to 3' exonuclease, C-terminal subdomain 80 d1i94m_ not modelled 66.2 25 Fold:S13-like H2TH domain Superfamily:S13-like H2TH domain Family:Ribosomal protein S13 81 d1cooa_ not modelled 66.0 17 Fold:SAM domain-like Superfamily:C-terminal domain of RNA polymerase alpha subunit Family:C-terminal domain of RNA polymerase alpha subunit 82 d1gm5a2 not modelled 65.0 15 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:RecG "wedge" domain 83 d1xo1a1 not modelled 64.8 23 Fold:SAM domain-like Superfamily:5' to 3' exonuclease, C-terminal subdomain Family:5' to 3' exonuclease, C-terminal subdomain 84 d1z3eb1 not modelled 64.3 11 Fold:SAM domain-like Superfamily:C-terminal domain of RNA polymerase alpha subunit Family:C-terminal domain of RNA polymerase alpha subunit 85 c2oceA_ not modelled 63.2 19 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein pa5201; PDBTitle: crystal structure of tex family protein pa5201 from2 pseudomonas aeruginosa 86 d1doqa_ not modelled 61.6 33 Fold:SAM domain-like Superfamily:C-terminal domain of RNA polymerase alpha subunit Family:C-terminal domain of RNA polymerase alpha subunit 87 c3iz6M_ not modelled 60.6 18 PDB header:ribosome Chain: M: PDB Molecule:40s ribosomal protein s18 (s13p); PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 88 d1y88a1 not modelled 59.2 23 Fold:SAM domain-like Superfamily:Rad51 N-terminal domain-like Family:Hypothetical protein AF1548, C-terminal domain 89 c2qddA_ not modelled 58.4 19 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:mandelate racemase/muconate lactonizing enzyme; PDBTitle: crystal structure of a member of enolase superfamily from roseovarius2 nubinhibens ism 90 d1ul1x1 not modelled 58.0 31 Fold:SAM domain-like Superfamily:5' to 3' exonuclease, C-terminal subdomain Family:5' to 3' exonuclease, C-terminal subdomain 91 d2uubm1 not modelled 57.9 25 Fold:S13-like H2TH domain Superfamily:S13-like H2TH domain Family:Ribosomal protein S13 92 c2xznM_ not modelled 57.5 20 PDB header:ribosome Chain: M: PDB Molecule:rps18e; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2 93 d1cmwa1 not modelled 56.6 56 Fold:SAM domain-like Superfamily:5' to 3' exonuclease, C-terminal subdomain Family:5' to 3' exonuclease, C-terminal subdomain 94 c1ut8B_ not modelled 54.8 23 PDB header:hydrolase Chain: B: PDB Molecule:exodeoxyribonuclease; PDBTitle: divalent metal ions (zinc) bound to t5 5'-exonuclease 95 c2bhnD_ not modelled 52.1 22 PDB header:hydrolase Chain: D: PDB Molecule:xpf endonuclease; PDBTitle: xpf from aeropyrum pernix 96 c3psiA_ not modelled 51.6 18 PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor spt6; PDBTitle: crystal structure of the spt6 core domain from saccharomyces2 cerevisiae, form spt6(239-1451) 97 c1ee8A_ not modelled 50.2 20 PDB header:dna binding protein Chain: A: PDB Molecule:mutm (fpg) protein; PDBTitle: crystal structure of mutm (fpg) protein from thermus thermophilus hb8 98 d2gy9m1 not modelled 49.2 24 Fold:S13-like H2TH domain Superfamily:S13-like H2TH domain Family:Ribosomal protein S13 99 c2zkqm_ not modelled 49.0 14 PDB header:ribosomal protein/rna Chain: M: PDB Molecule: PDBTitle: structure of a mammalian ribosomal 40s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 100 d1tdza1 not modelled 48.1 8 Fold:S13-like H2TH domain Superfamily:S13-like H2TH domain Family:Middle domain of MutM-like DNA repair proteins 101 d1r2za1 not modelled 46.6 17 Fold:S13-like H2TH domain Superfamily:S13-like H2TH domain Family:Middle domain of MutM-like DNA repair proteins 102 c2izoA_ not modelled 45.5 29 PDB header:hydrolase Chain: A: PDB Molecule:flap structure-specific endonuclease; PDBTitle: structure of an archaeal pcna1-pcna2-fen1 complex 103 c1a77A_ not modelled 44.6 40 PDB header:5'-3' exo/endo nuclease Chain: A: PDB Molecule:flap endonuclease-1 protein; PDBTitle: flap endonuclease-1 from methanococcus jannaschii 104 c1b43A_ not modelled 43.8 40 PDB header:transferase Chain: A: PDB Molecule:protein (fen-1); PDBTitle: fen-1 from p. furiosus 105 d1k82a1 not modelled 43.5 16 Fold:S13-like H2TH domain Superfamily:S13-like H2TH domain Family:Middle domain of MutM-like DNA repair proteins 106 d1d8ba_ not modelled 42.6 6 Fold:SAM domain-like Superfamily:HRDC-like Family:HRDC domain from helicases 107 c3q8lA_ not modelled 41.7 40 PDB header:hydrolase/dna Chain: A: PDB Molecule:flap endonuclease 1; PDBTitle: crystal structure of human flap endonuclease fen1 (wt) in complex with2 substrate 5'-flap dna, sm3+, and k+ 108 c3psfA_ not modelled 40.1 18 PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor spt6; PDBTitle: crystal structure of the spt6 core domain from saccharomyces2 cerevisiae, form spt6(236-1259) 109 c2i5hA_ not modelled 39.5 24 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein af1531; PDBTitle: crystal structure of af1531 from archaeoglobus fulgidus,2 pfam duf655 110 d2i5ha1 not modelled 39.5 24 Fold:AF1531-like Superfamily:AF1531-like Family:AF1531-like 111 c1rxvA_ not modelled 37.9 21 PDB header:hydrolase/dna Chain: A: PDB Molecule:flap structure-specific endonuclease; PDBTitle: crystal structure of a. fulgidus fen-1 bound to dna 112 c3oryA_ not modelled 37.8 50 PDB header:hydrolase Chain: A: PDB Molecule:flap endonuclease 1; PDBTitle: crystal structure of flap endonuclease 1 from hyperthermophilic2 archaeon desulfurococcus amylolyticus 113 c2ihnA_ not modelled 35.4 0 PDB header:hydrolase/dna Chain: A: PDB Molecule:ribonuclease h; PDBTitle: co-crystal of bacteriophage t4 rnase h with a fork dna2 substrate 114 c2jg6A_ not modelled 34.5 21 PDB header:hydrolase Chain: A: PDB Molecule:dna-3-methyladenine glycosidase; PDBTitle: crystal structure of a 3-methyladenine dna glycosylase i2 from staphylococcus aureus 115 c2nqlB_ not modelled 34.3 13 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:isomerase/lactonizing enzyme; PDBTitle: crystal structure of a member of the enolase superfamily from2 agrobacterium tumefaciens 116 c1ul1Y_ not modelled 33.4 40 PDB header:hydrolase/dna binding protein Chain: Y: PDB Molecule:flap endonuclease-1; PDBTitle: crystal structure of the human fen1-pcna complex 117 c2ziuA_ not modelled 31.6 18 PDB header:hydrolase Chain: A: PDB Molecule:mus81 protein; PDBTitle: crystal structure of the mus81-eme1 complex 118 c2rrdA_ not modelled 31.5 11 PDB header:dna binding protein Chain: A: PDB Molecule:hrdc domain from bloom syndrome protein; PDBTitle: structure of hrdc domain from human bloom syndrome protein, blm 119 d1nkua_ not modelled 31.2 22 Fold:DNA-glycosylase Superfamily:DNA-glycosylase Family:3-Methyladenine DNA glycosylase I (Tag) 120 c3c1zA_ not modelled 30.0 21 PDB header:dna binding protein Chain: A: PDB Molecule:dna integrity scanning protein disa; PDBTitle: structure of the ligand-free form of a bacterial dna damage2 sensor protein