Email l.a.kelley@imperial.ac.uk Description P76231 Date Thu Jan 5 12:20:57 GMT 2012 Unique Job ID 2c204cb483134b68

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3ihuA_ 87.3 26 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, gntr family; PDBTitle: crystal structure of dna binding protein (yp_298823.1) from ralstonia2 eutropha jmp134 at 1.92 a resolution 2 c3fmsA_ 83.0 18 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, gntr family; PDBTitle: crystal structure of tm0439, a gntr transcriptional2 regulator 3 d2hs5a1 82.5 29 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:GntR-like transcriptional regulators 4 c3c7jA_ 82.1 32 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, gntr family; PDBTitle: crystal structure of transcriptional regulator (gntr family member)2 from pseudomonas syringae pv. tomato str. dc3000 5 c2hs5A_ 77.9 29 PDB header:transcription regulator Chain: A: PDB Molecule:putative transcriptional regulator gntr; PDBTitle: structural genomics, the crystal structure of a putative2 transcriptional regulator gntr from rhodococcus sp. rha1 6 c3tqnC_ 74.6 10 PDB header:transcription Chain: C: PDB Molecule:transcriptional regulator, gntr family; PDBTitle: structure of the transcriptional regulator of the gntr family, from2 coxiella burnetii. 7 d3bwga1 67.3 20 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:GntR-like transcriptional regulators 8 c3by6C_ 64.5 10 PDB header:transcription regulator Chain: C: PDB Molecule:predicted transcriptional regulator; PDBTitle: crystal structure of a transcriptional regulator from oenococcus oeni 9 d1hw1a1 57.2 17 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:GntR-like transcriptional regulators 10 c3neuA_ 56.9 12 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:lin1836 protein; PDBTitle: the crystal structure of a functionally-unknown protein lin1836 from2 listeria innocua clip11262 11 c2du9A_ 56.4 4 PDB header:transcription Chain: A: PDB Molecule:predicted transcriptional regulators; PDBTitle: crystal structure of the transcriptional factor from c.glutamicum 12 c3bwgA_ 53.7 17 PDB header:transcription regulator Chain: A: PDB Molecule:uncharacterized hth-type transcriptional regulator yydk; PDBTitle: the crystal structure of possible transcriptional regulator yydk from2 bacillus subtilis subsp. subtilis str. 168 13 d1v4ra1 52.3 20 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:GntR-like transcriptional regulators 14 c1e2xA_ 51.7 18 PDB header:transcriptional regulation Chain: A: PDB Molecule:fatty acid metabolism regulator protein; PDBTitle: fadr, fatty acid responsive transcription factor from e.2 coli 15 c2di3A_ 51.4 21 PDB header:transcription Chain: A: PDB Molecule:bacterial regulatory proteins, gntr family; PDBTitle: crystal structure of the transcriptional factor cgl29152 from corynebacterium glutamicum 16 c2je2A_ 48.0 30 PDB header:metal binding protein Chain: A: PDB Molecule:cytochrome p460; PDBTitle: cytochrome p460 from nitrosomonas europaea - probable2 nonphysiological oxidized form 17 c3eetA_ 42.3 21 PDB header:transcription regulator Chain: A: PDB Molecule:putative gntr-family transcriptional regulator; PDBTitle: crystal structure of putative gntr-family transcriptional2 regulator 18 c3ic7A_ 41.0 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative transcriptional regulator; PDBTitle: crystal structure of putative transcriptional regulator of gntr family2 from bacteroides thetaiotaomicron 19 d1zlqa1 38.7 19 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 20 d2d3qa1 38.3 16 Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:Dyp-type peroxidase-like 21 c3edhA_ not modelled 33.3 40 PDB header:hydrolase Chain: A: PDB Molecule:bone morphogenetic protein 1; PDBTitle: crystal structure of bone morphogenetic protein 1 protease2 domain in complex with partially bound dmso 22 c2wv0H_ not modelled 32.5 20 PDB header:transcription Chain: H: PDB Molecule:hth-type transcriptional repressor yvoa; PDBTitle: crystal structure of the gntr-hutc family member yvoa from2 bacillus subtilis 23 c3t66A_ not modelled 31.0 14 PDB header:transport protein Chain: A: PDB Molecule:nickel abc transporter (nickel-binding protein); PDBTitle: crystal structure of nickel abc transporter from bacillus halodurans 24 c3edpB_ not modelled 30.3 4 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:lin2111 protein; PDBTitle: the crystal structure of the protein lin2111 (functionally unknown)2 from listeria innocua clip11262 25 d3bvua3 not modelled 29.7 8 Fold:7-stranded beta/alpha barrel Superfamily:Glycoside hydrolase/deacetylase Family:alpha-mannosidase 26 d1uqwa_ not modelled 28.9 19 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 27 d1jeta_ not modelled 28.1 29 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 28 c3lf9A_ not modelled 25.0 28 PDB header:immune system Chain: A: PDB Molecule:4e10_d0_1is1a_001_c (t161); PDBTitle: crystal structure of hiv epitope-scaffold 4e10_d0_1is1a_001_c 29 d1nyna_ not modelled 22.4 30 Fold:FYSH domain Superfamily:FYSH domain Family:Hypothetical protein Yhr087W 30 c3rqtA_ not modelled 21.6 27 PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: 1.5 angstrom crystal structure of the complex of ligand binding2 component of abc-type import system from staphylococcus aureus with3 nickel and two histidines 31 c3o9pA_ not modelled 21.2 29 PDB header:peptide binding protein/peptide Chain: A: PDB Molecule:periplasmic murein peptide-binding protein; PDBTitle: the structure of the escherichia coli murein tripeptide binding2 protein mppa 32 d1lbua1 not modelled 20.9 10 Fold:PGBD-like Superfamily:PGBD-like Family:Peptidoglycan binding domain, PGBD 33 c3ry3B_ not modelled 20.1 24 PDB header:transport protein Chain: B: PDB Molecule:putative solute-binding protein; PDBTitle: putative solute-binding protein from yersinia pestis. 34 c2wokA_ not modelled 19.2 24 PDB header:peptide binding protein/peptide Chain: A: PDB Molecule:clavulanic acid biosynthesis oligopeptide PDBTitle: clavulanic acid biosynthesis oligopeptide2 binding protein 2 complexed with bradykinin 35 c1ztyA_ not modelled 19.2 32 PDB header:sugar binding protein, signaling protein Chain: A: PDB Molecule:chitin oligosaccharide binding protein; PDBTitle: crystal structure of the chitin oligasaccharide binding2 protein 36 d1asta_ not modelled 18.9 16 Fold:Zincin-like Superfamily:Metalloproteases ("zincins"), catalytic domain Family:Astacin 37 c3ftoA_ not modelled 17.0 29 PDB header:peptide binding protein Chain: A: PDB Molecule:oligopeptide-binding protein oppa; PDBTitle: crystal structure of oppa in a open conformation 38 c2grvC_ not modelled 16.9 9 PDB header:biosynthetic protein Chain: C: PDB Molecule:lpqw; PDBTitle: crystal structure of lpqw 39 d1xoca1 not modelled 16.5 24 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 40 d1vr5a1 not modelled 16.5 29 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 41 c2o7jA_ not modelled 16.2 30 PDB header:sugar binding protein Chain: A: PDB Molecule:oligopeptide abc transporter, periplasmic PDBTitle: the x-ray crystal structure of a thermophilic cellobiose2 binding protein bound with cellopentaose 42 c3fxeA_ not modelled 15.9 46 PDB header:unknown function Chain: A: PDB Molecule:protein icmq; PDBTitle: crystal structure of interacting domains of icmr and icmq (seleno-2 derivative) 43 c1o7dA_ not modelled 15.8 8 PDB header:hydrolase Chain: A: PDB Molecule:lysosomal alpha-mannosidase; PDBTitle: the structure of the bovine lysosomal a-mannosidase2 suggests a novel mechanism for low ph activation 44 c2ztbB_ not modelled 14.9 33 PDB header:toxin Chain: B: PDB Molecule:crystal protein; PDBTitle: crystal structure of the parasporin-2 bacillus thuringiensis toxin2 that recognizes cancer cells 45 c3fiqA_ not modelled 14.9 17 PDB header:transport protein Chain: A: PDB Molecule:odorant-binding protein 1f; PDBTitle: odorant binding protein obp1 46 c3itfA_ not modelled 14.7 50 PDB header:signaling protein Chain: A: PDB Molecule:periplasmic adaptor protein cpxp; PDBTitle: structural basis for the inhibitory function of the cpxp adaptor2 protein 47 d1qh4a1 not modelled 13.2 14 Fold:Guanido kinase N-terminal domain Superfamily:Guanido kinase N-terminal domain Family:Guanido kinase N-terminal domain 48 d1cola_ not modelled 13.2 27 Fold:Toxins' membrane translocation domains Superfamily:Colicin Family:Colicin 49 c3oeoD_ not modelled 12.9 63 PDB header:signaling protein Chain: D: PDB Molecule:spheroplast protein y; PDBTitle: the crystal structure e. coli spy 50 c3o39A_ not modelled 12.5 63 PDB header:chaperone Chain: A: PDB Molecule:periplasmic protein related to spheroblast formation; PDBTitle: crystal structure of spy 51 c3lqbA_ not modelled 12.4 27 PDB header:hydrolase Chain: A: PDB Molecule:loc792177 protein; PDBTitle: crystal structure of the hatching enzyme zhe1 from the zebrafish danio2 rerio 52 d1qk1a1 not modelled 12.1 36 Fold:Guanido kinase N-terminal domain Superfamily:Guanido kinase N-terminal domain Family:Guanido kinase N-terminal domain 53 d1rh1a2 not modelled 11.9 13 Fold:Toxins' membrane translocation domains Superfamily:Colicin Family:Colicin 54 c2da4A_ not modelled 11.8 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein dkfzp686k21156; PDBTitle: solution structure of the homeobox domain of the2 hypothetical protein, dkfzp686k21156 55 d1g0wa1 not modelled 11.6 29 Fold:Guanido kinase N-terminal domain Superfamily:Guanido kinase N-terminal domain Family:Guanido kinase N-terminal domain 56 c3qzcA_ not modelled 11.5 50 PDB header:signaling protein Chain: A: PDB Molecule:periplasmic protein cpxp; PDBTitle: structure of the periplasmic stress response protein cpxp 57 c1wnmA_ not modelled 11.3 18 PDB header:transcription Chain: A: PDB Molecule:fibroin-modulator binding-protein-1; PDBTitle: nmr structure of fmbp-1 tandem repeat 2 in 30%(v/v) tfe2 solution 58 c2i88A_ not modelled 11.1 20 PDB header:membrane protein Chain: A: PDB Molecule:colicin-e1; PDBTitle: crystal structure of the channel-forming domain of colicin2 e1 59 d1ciia1 not modelled 11.0 20 Fold:Toxins' membrane translocation domains Superfamily:Colicin Family:Colicin 60 c2k0mA_ not modelled 11.0 9 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution nmr structure of the uncharacterized protein from2 rhodospirillum rubrum gene locus rru_a0810. northeast3 structural genomics target rrr43 61 d1hq1a_ not modelled 10.9 45 Fold:Signal peptide-binding domain Superfamily:Signal peptide-binding domain Family:Signal peptide-binding domain 62 c1wnkA_ not modelled 10.5 27 PDB header:transcription Chain: A: PDB Molecule:fibroin-modulator-binding-protein-1; PDBTitle: nmr structure of fmbp-1 tandem repeat 3 in 30%(v/v) tfe2 solution 63 d1uoua1 not modelled 10.4 26 Fold:Methionine synthase domain-like Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain 64 c3rnvA_ not modelled 10.4 100 PDB header:hydrolase Chain: A: PDB Molecule:helper component proteinase; PDBTitle: structure of the autocatalytic cysteine protease domain of potyvirus2 helper-component proteinase 65 d2qqsa2 not modelled 10.4 50 Fold:SH3-like barrel Superfamily:Tudor/PWWP/MBT Family:Tudor domain 66 c3h01A_ not modelled 10.1 17 PDB header:viral protein Chain: A: PDB Molecule:envelope glycoprotein gp160; PDBTitle: structure of the c-terminal domain of a putative hiv-1 gp412 fusion intermediate 67 d1a87a_ not modelled 10.0 13 Fold:Toxins' membrane translocation domains Superfamily:Colicin Family:Colicin 68 c1a87A_ not modelled 10.0 13 PDB header:bacteriocin Chain: A: PDB Molecule:colicin n; PDBTitle: colicin n 69 d1m15a1 not modelled 10.0 7 Fold:Guanido kinase N-terminal domain Superfamily:Guanido kinase N-terminal domain Family:Guanido kinase N-terminal domain 70 c2d5wA_ not modelled 10.0 29 PDB header:peptide binding protein Chain: A: PDB Molecule:peptide abc transporter, peptide-binding protein; PDBTitle: the crystal structure of oligopeptide binding protein from thermus2 thermophilus hb8 complexed with pentapeptide 71 d1dula_ not modelled 9.9 36 Fold:Signal peptide-binding domain Superfamily:Signal peptide-binding domain Family:Signal peptide-binding domain 72 d1crka1 not modelled 9.9 21 Fold:Guanido kinase N-terminal domain Superfamily:Guanido kinase N-terminal domain Family:Guanido kinase N-terminal domain 73 d2c42a2 not modelled 9.8 60 Fold:Thiamin diphosphate-binding fold (THDP-binding) Superfamily:Thiamin diphosphate-binding fold (THDP-binding) Family:PFOR PP module 74 d1i0ea1 not modelled 9.8 21 Fold:Guanido kinase N-terminal domain Superfamily:Guanido kinase N-terminal domain Family:Guanido kinase N-terminal domain 75 d1k1xa3 not modelled 9.7 20 Fold:7-stranded beta/alpha barrel Superfamily:Glycoside hydrolase/deacetylase Family:4-alpha-glucanotransferase, N-terminal domain 76 d1vrpa1 not modelled 9.5 14 Fold:Guanido kinase N-terminal domain Superfamily:Guanido kinase N-terminal domain Family:Guanido kinase N-terminal domain 77 c2wyhA_ not modelled 9.3 33 PDB header:hydrolase Chain: A: PDB Molecule:alpha-mannosidase; PDBTitle: structure of the streptococcus pyogenes family gh38 alpha-2 mannosidase 78 d1u6ra1 not modelled 9.3 21 Fold:Guanido kinase N-terminal domain Superfamily:Guanido kinase N-terminal domain Family:Guanido kinase N-terminal domain 79 c3cyoA_ not modelled 9.2 19 PDB header:viral protein Chain: A: PDB Molecule:transmembrane protein; PDBTitle: structure of a longer thermalstable core domain of hiv-12 gp41 containing the enfuvirtide resistance mutation n43d3 and complementary mutation e137k 80 c2ba0I_ not modelled 8.9 21 PDB header:rna binding protein Chain: I: PDB Molecule:archeal exosome rna binding protein rrp42; PDBTitle: archaeal exosome core 81 d1lv3a_ not modelled 8.8 25 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Hypothetical zinc finger protein YacG 82 d2tpta1 not modelled 8.7 28 Fold:Methionine synthase domain-like Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain 83 c3qiiA_ not modelled 8.2 38 PDB header:transcription regulator Chain: A: PDB Molecule:phd finger protein 20; PDBTitle: crystal structure of tudor domain 2 of human phd finger protein 20 84 c2ow7A_ not modelled 8.0 8 PDB header:hydrolase Chain: A: PDB Molecule:alpha-mannosidase 2; PDBTitle: golgi alpha-mannosidase ii complex with (1r,6s,7r,8s)-1-2 thioniabicyclo[4.3.0]nonan-7,8-diol chloride 85 d1chka_ not modelled 7.8 25 Fold:Lysozyme-like Superfamily:Lysozyme-like Family:Chitosanase 86 d2qqra2 not modelled 7.8 50 Fold:SH3-like barrel Superfamily:Tudor/PWWP/MBT Family:Tudor domain 87 c3fewX_ not modelled 7.7 27 PDB header:immune system Chain: X: PDB Molecule:colicin s4; PDBTitle: structure and function of colicin s4, a colicin with a2 duplicated receptor binding domain 88 c2ex3I_ not modelled 7.7 25 PDB header:transferase/replication Chain: I: PDB Molecule:dna polymerase; PDBTitle: bacteriophage phi29 dna polymerase bound to terminal protein 89 c1i5xA_ not modelled 7.7 19 PDB header:viral protein Chain: A: PDB Molecule:transmembrane glycoprotein (gp41); PDBTitle: hiv-1 gp41 core 90 d1z9ha1 not modelled 7.7 24 Fold:GST C-terminal domain-like Superfamily:GST C-terminal domain-like Family:Glutathione S-transferase (GST), C-terminal domain 91 d1stfi_ not modelled 7.4 17 Fold:Cystatin-like Superfamily:Cystatin/monellin Family:Cystatins 92 c2o61A_ not modelled 7.2 50 PDB header:transcription/dna Chain: A: PDB Molecule:transcription factor p65/interferon regulatory factor PDBTitle: crystal structure of nfkb, irf7, irf3 bound to the interferon-b2 enhancer 93 d1o17a1 not modelled 7.0 11 Fold:Methionine synthase domain-like Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain 94 c3letB_ not modelled 7.0 28 PDB header:transferase Chain: B: PDB Molecule:adenosine monophosphate-protein transferase vops; PDBTitle: crystal structure of fic domain containing ampylator, vops 95 d2ffha2 not modelled 7.0 55 Fold:Signal peptide-binding domain Superfamily:Signal peptide-binding domain Family:Signal peptide-binding domain 96 d1zela2 not modelled 6.7 25 Fold:Rv2827c C-terminal domain-like Superfamily:Rv2827c C-terminal domain-like Family:Rv2827c C-terminal domain-like 97 c2nn6E_ not modelled 6.7 11 PDB header:hydrolase/transferase Chain: E: PDB Molecule:exosome complex exonuclease rrp42; PDBTitle: structure of the human rna exosome composed of rrp41, rrp45,2 rrp46, rrp43, mtr3, rrp42, csl4, rrp4, and rrp40 98 c3epvB_ not modelled 6.5 25 PDB header:metal binding protein Chain: B: PDB Molecule:nickel and cobalt resistance protein cnrr; PDBTitle: x-ray structure of the metal-sensor cnrx in both the apo- and copper-2 bound forms 99 d1f46a_ not modelled 6.5 4 Fold:TBP-like Superfamily:Cell-division protein ZipA, C-terminal domain Family:Cell-division protein ZipA, C-terminal domain