Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP18004
DateThu Jan 5 11:36:30 GMT 2012
Unique Job ID1f6720e1bfca583d

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template d1e9ra_
Top template information
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
Confidence and coverage
Confidence:100.0% Coverage: 39%
341 residues ( 39% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MNNPLEAVTQAVNSLVTALKLPDESAKANEVLGEMSFPQFSRLLPYRDYNQESGLFMNDT
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Disorder  ???











????????????





????






















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   .........70.........80.........90.........100.........110.........120
Sequence  TMGFMLEAIPINGANESIVEALDHMLRTKLPRGIPLCIHLMSSQLVGDRIEYGLREFSWS
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???
??









































??
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   .........130.........140.........150.........160.........170.........180
Sequence  GEQAERFNAITRAYYMKAAATQFPLPEGMNLPLTLRHYRVFISYCSPSKKKSRADILEME
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Disorder  ??
















????
????????













??????







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   .........190.........200.........210.........220.........230.........240
Sequence  NLVKIIRASLQGASITTQTVDAQAFIDIVGEMINHNPDSLYPKRRQLDPYSDLNYQCVED
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??






















?
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   .........250.........260.........270.........280.........290.........300
Sequence  SFDLKVRADYLTLGLRENGRNSTARILNFHLARNPEIAFLWNMADNYSNLLNPELSISCP
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?





















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   .........310.........320.........330.........340.........350.........360
Sequence  FILTLTLVVEDQVKTHSEANLKYMDLEKKSKTSYAKWFPSVEKEAKEWGELRQRLGSGQS
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??















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??
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   .........370.........380.........390.........400.........410.........420
Sequence  SVVSYFLNITAFCKDNNETALEVEQDILNSFRKNGFELISPRFNHMRNFLTCLPFMAGKG
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??
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   .........430.........440.........450.........460.........470.........480
Sequence  LFKQLKEAGVVQRAESFNVANLMPLVADNPLTPAGLLAPTYRNQLAFIDIFFRGMNNTNY
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Disorder  ??
?

???????













?
?





















?
??



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   .........490.........500.........510.........520.........530.........540
Sequence  NMAVCGTSGAGKTGLIQPLIRSVLDSGGFAVVFDMGDGYKSLCENMGGVYLDGETLRFNP
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   .........550.........560.........570.........580.........590.........600
Sequence  FANITDIDQSAERVRDQLSVMASPNGNLDEVHEGLLLQAVRASWLAKENRARIDDVVDFL
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???????






























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   .........610.........620.........630.........640.........650.........660
Sequence  KNASDSEQYAESPTIRSRLDEMIVLLDQYTANGTYGQYFNSDEPSLRDDAKMVVLELGGL
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Disorder 



??????????




























??
?











?
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   .........670.........680.........690.........700.........710.........720
Sequence  EDRPSLLVAVMFSLIIYIENRMYRTPRNLKKLNVIDEGWRLLDFKNHKVGEFIEKGYRTA
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Disorder  ??




















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?













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   .........730.........740.........750.........760.........770.........780
Sequence  RRHTGAYITITQNIVDFDSDKASSAARAAWGNSSYKIILKQSAKEFAKYNQLYPDQFLPL
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Disorder 















??????
?




























?

?


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   .........790.........800.........810.........820.........830.........840
Sequence  QRDMIGKFGAAKDQWFSSFLLQVENHSSWHRLFVDPLSRAMYSSDGPDFEFVQQKRKEGL
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??
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   .........850.........860.........870.....
Sequence  SIHEAVWQLAWKKSGPEMASLEAWLEEHEKYRSVA
Secondary structure 





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Disorder 











?
???














???
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Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 1e9r chain A

3D model

Region: 461 - 816
Aligned: 341
Modelled: 356
Confidence: 100.0%
Identity: 14%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: RecA protein-like (ATPase-domain)

Phyre2

PDB 2ius chain B

3D model

Region: 454 - 770
Aligned: 211
Modelled: 251
Confidence: 99.7%
Identity: 22%
PDB header:membrane protein
Chain: B: PDB Molecule:dna translocase ftsk;
PDBTitle: e. coli ftsk motor domain

Phyre2

PDB 2iut chain A

3D model

Region: 454 - 770
Aligned: 219
Modelled: 250
Confidence: 99.7%
Identity: 21%
PDB header:membrane protein
Chain: A: PDB Molecule:dna translocase ftsk;
PDBTitle: p. aeruginosa ftsk motor domain, dimeric

Phyre2

PDB 2iuu chain E

3D model

Region: 454 - 770
Aligned: 219
Modelled: 250
Confidence: 99.6%
Identity: 21%
PDB header:membrane protein
Chain: E: PDB Molecule:dna translocase ftsk;
PDBTitle: p. aeruginosa ftsk motor domain, hexamer

Phyre2

PDB 1ji0 chain A

3D model

Region: 481 - 762
Aligned: 180
Modelled: 193
Confidence: 98.1%
Identity: 17%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: ABC transporter ATPase domain-like

Phyre2

PDB 1vpl chain A

3D model

Region: 482 - 762
Aligned: 179
Modelled: 193
Confidence: 98.0%
Identity: 17%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: ABC transporter ATPase domain-like

Phyre2

PDB 2nq2 chain C

3D model

Region: 455 - 762
Aligned: 196
Modelled: 222
Confidence: 98.0%
Identity: 16%
PDB header:metal transport
Chain: C: PDB Molecule:hypothetical abc transporter atp-binding protein
PDBTitle: an inward-facing conformation of a putative metal-chelate2 type abc transporter.

Phyre2

PDB 2yz2 chain B

3D model

Region: 477 - 762
Aligned: 184
Modelled: 211
Confidence: 97.9%
Identity: 15%
PDB header:hydrolase
Chain: B: PDB Molecule:putative abc transporter atp-binding protein tm_0222;
PDBTitle: crystal structure of the abc transporter in the cobalt transport2 system

Phyre2

PDB 1oxt chain B

3D model

Region: 482 - 762
Aligned: 176
Modelled: 190
Confidence: 97.9%
Identity: 14%
PDB header:transport protein
Chain: B: PDB Molecule:abc transporter, atp binding protein;
PDBTitle: crystal structure of glcv, the abc-atpase of the glucose abc2 transporter from sulfolobus solfataricus

Phyre2

PDB 2olk chain D

3D model

Region: 477 - 762
Aligned: 186
Modelled: 189
Confidence: 97.9%
Identity: 13%
PDB header:hydrolase
Chain: D: PDB Molecule:amino acid abc transporter;
PDBTitle: abc protein artp in complex with adp-beta-s

Phyre2

PDB 3fvq chain B

3D model

Region: 482 - 762
Aligned: 179
Modelled: 193
Confidence: 97.8%
Identity: 16%
PDB header:hydrolase
Chain: B: PDB Molecule:fe(3+) ions import atp-binding protein fbpc;
PDBTitle: crystal structure of the nucleotide binding domain fbpc2 complexed with atp

Phyre2

PDB 1g6h chain A

3D model

Region: 481 - 762
Aligned: 193
Modelled: 228
Confidence: 97.8%
Identity: 15%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: ABC transporter ATPase domain-like

Phyre2

PDB 1z47 chain B

3D model

Region: 482 - 762
Aligned: 178
Modelled: 197
Confidence: 97.8%
Identity: 16%
PDB header:ligand binding protein
Chain: B: PDB Molecule:putative abc-transporter atp-binding protein;
PDBTitle: structure of the atpase subunit cysa of the putative2 sulfate atp-binding cassette (abc) transporter from3 alicyclobacillus acidocaldarius

Phyre2

PDB 2r2a chain B

3D model

Region: 692 - 760
Aligned: 61
Modelled: 69
Confidence: 97.8%
Identity: 13%
PDB header:toxin
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of n-terminal domain of zonular occludens toxin from2 neisseria meningitidis

Phyre2

PDB 1b0u chain A

3D model

Region: 481 - 762
Aligned: 182
Modelled: 206
Confidence: 97.8%
Identity: 14%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: ABC transporter ATPase domain-like

Phyre2

PDB 2qy9 chain A domain 2

3D model

Region: 475 - 516
Aligned: 42
Modelled: 42
Confidence: 97.7%
Identity: 21%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: Nitrogenase iron protein-like

Phyre2

PDB 1vma chain A domain 2

3D model

Region: 482 - 514
Aligned: 33
Modelled: 33
Confidence: 97.7%
Identity: 30%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: Nitrogenase iron protein-like

Phyre2

PDB 2xgj chain A

3D model

Region: 479 - 540
Aligned: 62
Modelled: 62
Confidence: 97.7%
Identity: 23%
PDB header:hydrolase/rna
Chain: A: PDB Molecule:atp-dependent rna helicase dob1;
PDBTitle: structure of mtr4, a dexh helicase involved in nuclear rna2 processing and surveillance

Phyre2

PDB 3l9o chain A

3D model

Region: 478 - 540
Aligned: 63
Modelled: 63
Confidence: 97.6%
Identity: 22%
PDB header:hydrolase
Chain: A: PDB Molecule:atp-dependent rna helicase dob1;
PDBTitle: crystal structure of mtr4, a co-factor of the nuclear exosome

Phyre2

PDB 1np6 chain A

3D model

Region: 482 - 516
Aligned: 35
Modelled: 35
Confidence: 97.6%
Identity: 29%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: Nitrogenase iron protein-like

Phyre2
1

d1e9ra_
2

c2iusB_
3

c2iutA_
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c2iuuE_
5

d1ji0a_
6

d1vpla_
7

c2nq2C_
8

c2yz2B_
9

c1oxtB_
10

c2olkD_
11

c3fvqB_
12

d1g6ha_
13

c1z47B_
14

c2r2aB_
15

d1b0ua_
16

d2qy9a2
17

d1vmaa2
18

c2xgjA_
19

c3l9oA_
20

d1np6a_
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1e9ra_



100.0 14 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
2c2iusB_



99.7 22 PDB header:membrane protein
Chain: B: PDB Molecule:dna translocase ftsk;
PDBTitle: e. coli ftsk motor domain
3c2iutA_



99.7 21 PDB header:membrane protein
Chain: A: PDB Molecule:dna translocase ftsk;
PDBTitle: p. aeruginosa ftsk motor domain, dimeric
4c2iuuE_



99.6 21 PDB header:membrane protein
Chain: E: PDB Molecule:dna translocase ftsk;
PDBTitle: p. aeruginosa ftsk motor domain, hexamer
5d1ji0a_



98.1 17 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:ABC transporter ATPase domain-like
6d1vpla_



98.0 17 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:ABC transporter ATPase domain-like
7c2nq2C_



98.0 16 PDB header:metal transport
Chain: C: PDB Molecule:hypothetical abc transporter atp-binding protein
PDBTitle: an inward-facing conformation of a putative metal-chelate2 type abc transporter.
8c2yz2B_



97.9 15 PDB header:hydrolase
Chain: B: PDB Molecule:putative abc transporter atp-binding protein tm_0222;
PDBTitle: crystal structure of the abc transporter in the cobalt transport2 system
9c1oxtB_



97.9 14 PDB header:transport protein
Chain: B: PDB Molecule:abc transporter, atp binding protein;
PDBTitle: crystal structure of glcv, the abc-atpase of the glucose abc2 transporter from sulfolobus solfataricus
10c2olkD_



97.9 13 PDB header:hydrolase
Chain: D: PDB Molecule:amino acid abc transporter;
PDBTitle: abc protein artp in complex with adp-beta-s
11c3fvqB_



97.8 16 PDB header:hydrolase
Chain: B: PDB Molecule:fe(3+) ions import atp-binding protein fbpc;
PDBTitle: crystal structure of the nucleotide binding domain fbpc2 complexed with atp
12d1g6ha_



97.8 15 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:ABC transporter ATPase domain-like
13c1z47B_



97.8 16 PDB header:ligand binding protein
Chain: B: PDB Molecule:putative abc-transporter atp-binding protein;
PDBTitle: structure of the atpase subunit cysa of the putative2 sulfate atp-binding cassette (abc) transporter from3 alicyclobacillus acidocaldarius
14c2r2aB_



97.8 13 PDB header:toxin
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of n-terminal domain of zonular occludens toxin from2 neisseria meningitidis
15d1b0ua_



97.8 14 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:ABC transporter ATPase domain-like
16d2qy9a2



97.7 21 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
17d1vmaa2



97.7 30 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
18c2xgjA_



97.7 23 PDB header:hydrolase/rna
Chain: A: PDB Molecule:atp-dependent rna helicase dob1;
PDBTitle: structure of mtr4, a dexh helicase involved in nuclear rna2 processing and surveillance
19c3l9oA_



97.6 22 PDB header:hydrolase
Chain: A: PDB Molecule:atp-dependent rna helicase dob1;
PDBTitle: crystal structure of mtr4, a co-factor of the nuclear exosome
20d1np6a_



97.6 29 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
21d1okkd2



not modelled 97.6 29 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
22c2w0mA_



not modelled 97.6 20 PDB header:unknown function
Chain: A: PDB Molecule:sso2452;
PDBTitle: crystal structure of sso2452 from sulfolobus solfataricus2 p2
23d1g6oa_



not modelled 97.6 23 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
24d2i3ba1



not modelled 97.6 27 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
25c2yl4A_



not modelled 97.6 17 PDB header:membrane protein
Chain: A: PDB Molecule:atp-binding cassette sub-family b member 10,
PDBTitle: structure of the human mitochondrial abc transporter, abcb10
26d1l7vc_



not modelled 97.5 15 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:ABC transporter ATPase domain-like
27d1p9ra_



not modelled 97.5 14 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
28d3dhwc1



not modelled 97.5 15 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:ABC transporter ATPase domain-like
29c4a4zA_



not modelled 97.5 16 PDB header:hydrolase
Chain: A: PDB Molecule:antiviral helicase ski2;
PDBTitle: crystal structure of the s. cerevisiae dexh helicase ski2 bound to2 amppnp
30c2f1rA_



not modelled 97.5 26 PDB header:biosynthetic protein
Chain: A: PDB Molecule:molybdopterin-guanine dinucleotide biosynthesis
PDBTitle: crystal structure of molybdopterin-guanine biosynthesis2 protein b (mobb)
31d1qzxa3



not modelled 97.5 20 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
32c2gzaB_



not modelled 97.5 20 PDB header:hydrolase
Chain: B: PDB Molecule:type iv secretion system protein virb11;
PDBTitle: crystal structure of the virb11 atpase from the brucella suis type iv2 secretion system in complex with sulphate
33c3jvvA_



not modelled 97.4 12 PDB header:atp binding protein
Chain: A: PDB Molecule:twitching mobility protein;
PDBTitle: crystal structure of p. aeruginosa pilt with bound amp-pcp
34d1ls1a2



not modelled 97.4 18 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
35c2oaq1_



not modelled 97.4 17 PDB header:hydrolase
Chain: 1: PDB Molecule:type ii secretion system protein;
PDBTitle: crystal structure of the archaeal secretion atpase gspe in complex2 with phosphate
36c3a4mB_



not modelled 97.4 18 PDB header:transferase
Chain: B: PDB Molecule:l-seryl-trna(sec) kinase;
PDBTitle: crystal structure of archaeal o-phosphoseryl-trna(sec)2 kinase
37c2cnwF_



not modelled 97.3 21 PDB header:signal recognition
Chain: F: PDB Molecule:cell division protein ftsy;
PDBTitle: gdpalf4 complex of the srp gtpases ffh and ftsy
38c2ja1A_



not modelled 97.3 21 PDB header:transferase
Chain: A: PDB Molecule:thymidine kinase;
PDBTitle: thymidine kinase from b. cereus with ttp bound as phosphate2 donor.
39c2j7pA_



not modelled 97.3 16 PDB header:signal recognition
Chain: A: PDB Molecule:signal recognition particle protein;
PDBTitle: gmppnp-stabilized ng domain complex of the srp gtpases ffh2 and ftsy
40c2qy9A_



not modelled 97.3 20 PDB header:protein transport
Chain: A: PDB Molecule:cell division protein ftsy;
PDBTitle: structure of the ng+1 construct of the e. coli srp receptor2 ftsy
41d1rz3a_



not modelled 97.3 29 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Phosphoribulokinase/pantothenate kinase
42c1zu4A_



not modelled 97.2 17 PDB header:protein transport
Chain: A: PDB Molecule:ftsy;
PDBTitle: crystal structure of ftsy from mycoplasma mycoides- space2 group p21212
43c2gszE_



not modelled 97.2 19 PDB header:protein transport
Chain: E: PDB Molecule:twitching motility protein pilt;
PDBTitle: structure of a. aeolicus pilt with 6 monomers per2 asymmetric unit
44c1vmaA_



not modelled 97.2 24 PDB header:protein transport
Chain: A: PDB Molecule:cell division protein ftsy;
PDBTitle: crystal structure of cell division protein ftsy (tm0570) from2 thermotoga maritima at 1.60 a resolution
45c3b9qA_



not modelled 97.1 16 PDB header:protein transport
Chain: A: PDB Molecule:chloroplast srp receptor homolog, alpha subunit
PDBTitle: the crystal structure of cpftsy from arabidopsis thaliana
46c2og2A_



not modelled 97.1 17 PDB header:protein transport
Chain: A: PDB Molecule:putative signal recognition particle receptor;
PDBTitle: crystal structure of chloroplast ftsy from arabidopsis2 thaliana
47d2qm8a1



not modelled 97.1 22 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
48c2yhsA_



not modelled 97.1 21 PDB header:cell cycle
Chain: A: PDB Molecule:cell division protein ftsy;
PDBTitle: structure of the e. coli srp receptor ftsy
49d1byia_



not modelled 97.1 20 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
50d1tf7a2



not modelled 97.0 20 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
51d1tf7a1



not modelled 97.0 20 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
52c2dr3A_



not modelled 97.0 20 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:upf0273 protein ph0284;
PDBTitle: crystal structure of reca superfamily atpase ph0284 from pyrococcus2 horikoshii ot3
53c3c8uA_



not modelled 97.0 31 PDB header:transferase
Chain: A: PDB Molecule:fructokinase;
PDBTitle: crystal structure of putative fructose transport system kinase2 (yp_612366.1) from silicibacter sp. tm1040 at 1.95 a resolution
54c3dmdA_



not modelled 97.0 26 PDB header:transport protein
Chain: A: PDB Molecule:signal recognition particle receptor;
PDBTitle: structures and conformations in solution of the signal recognition2 particle receptor from the archaeon pyrococcus furiosus
55c3hr8A_



not modelled 97.0 26 PDB header:recombination
Chain: A: PDB Molecule:protein reca;
PDBTitle: crystal structure of thermotoga maritima reca
56d1nksa_



not modelled 97.0 19 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nucleotide and nucleoside kinases
57c2recB_



not modelled 96.9 21 PDB header:helicase
PDB COMPND:
58c1xp8A_



not modelled 96.9 21 PDB header:dna binding protein
Chain: A: PDB Molecule:reca protein;
PDBTitle: "deinococcus radiodurans reca in complex with atp-gamma-s"
59c1xx6B_



not modelled 96.9 18 PDB header:transferase
Chain: B: PDB Molecule:thymidine kinase;
PDBTitle: x-ray structure of clostridium acetobutylicum thymidine kinase with2 adp. northeast structural genomics target car26.
60c1u9iA_



not modelled 96.9 22 PDB header:circadian clock protein
Chain: A: PDB Molecule:kaic;
PDBTitle: crystal structure of circadian clock protein kaic with phosphorylation2 sites
61c3nxsA_



not modelled 96.9 24 PDB header:transport protein
Chain: A: PDB Molecule:lao/ao transport system atpase;
PDBTitle: crystal structure of lao/ao transport system from mycobacterium2 smegmatis bound to gdp
62c2wwwB_



not modelled 96.9 20 PDB header:transport protein
Chain: B: PDB Molecule:methylmalonic aciduria type a protein,
PDBTitle: crystal structure of methylmalonic acidemia type a protein
63c3tqcB_



not modelled 96.9 14 PDB header:transferase
Chain: B: PDB Molecule:pantothenate kinase;
PDBTitle: structure of the pantothenate kinase (coaa) from coxiella burnetii
64c3cmvG_



not modelled 96.9 21 PDB header:recombination
Chain: G: PDB Molecule:protein reca;
PDBTitle: mechanism of homologous recombination from the reca-2 ssdna/dsdna structures
65d1u94a1



not modelled 96.9 21 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
66d1rkba_



not modelled 96.9 34 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nucleotide and nucleoside kinases
67d1mo6a1



not modelled 96.9 21 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
68c2wwiC_



not modelled 96.9 10 PDB header:transferase
Chain: C: PDB Molecule:thymidilate kinase, putative;
PDBTitle: plasmodium falciparum thymidylate kinase in complex with2 aztmp and adp
69c2eyuA_



not modelled 96.9 21 PDB header:protein transport
Chain: A: PDB Molecule:twitching motility protein pilt;
PDBTitle: the crystal structure of the c-terminal domain of aquifex2 aeolicus pilt
70d1ye8a1



not modelled 96.9 18 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
71c3b85A_



not modelled 96.8 24 PDB header:hydrolase
Chain: A: PDB Molecule:phosphate starvation-inducible protein;
PDBTitle: crystal structure of predicted phosphate starvation-induced atpase2 phoh2 from corynebacterium glutamicum
72d1l8qa2



not modelled 96.8 20 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Extended AAA-ATPase domain
73c2zroA_



not modelled 96.8 21 PDB header:hydrolase
Chain: A: PDB Molecule:protein reca;
PDBTitle: msreca adp form iv
74d1ki9a_



not modelled 96.8 22 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nucleotide and nucleoside kinases
75c2gesA_



not modelled 96.8 14 PDB header:transferase
Chain: A: PDB Molecule:pantothenate kinase;
PDBTitle: pantothenate kinase from mycobacterium tuberculosis (mtpank) in2 complex with a coenzyme a derivative, form-i (rt)
76c2z0hA_



not modelled 96.8 24 PDB header:transferase
Chain: A: PDB Molecule:thymidylate kinase;
PDBTitle: crystal structure of thymidylate kinase in complex with dtdp2 and adp from thermotoga maritima
77d1sq5a_



not modelled 96.8 13 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Phosphoribulokinase/pantothenate kinase
78d1xp8a1



not modelled 96.8 21 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
79c3oiyB_



not modelled 96.8 13 PDB header:isomerase
Chain: B: PDB Molecule:reverse gyrase helicase domain;
PDBTitle: helicase domain of reverse gyrase from thermotoga maritima
80c2iy3A_



not modelled 96.8 16 PDB header:rna-binding
Chain: A: PDB Molecule:signal recognition particle protein ffh;
PDBTitle: structure of the e. coli signal recognition particle2 bound to a translating ribosome
81d1ubea1



not modelled 96.8 21 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
82c3asyB_



not modelled 96.8 33 PDB header:transferase
Chain: B: PDB Molecule:uridine kinase;
PDBTitle: ligand-free structure of uridine kinase from thermus thermophilus hb8
83c3of5A_



not modelled 96.8 18 PDB header:ligase
Chain: A: PDB Molecule:dethiobiotin synthetase;
PDBTitle: crystal structure of a dethiobiotin synthetase from francisella2 tularensis subsp. tularensis schu s4
84d1xjca_



not modelled 96.8 22 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
85d1khta_



not modelled 96.8 23 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nucleotide and nucleoside kinases
86c2gksB_



not modelled 96.7 21 PDB header:transferase
Chain: B: PDB Molecule:bifunctional sat/aps kinase;
PDBTitle: crystal structure of the bi-functional atp sulfurylase-aps kinase from2 aquifex aeolicus, a chemolithotrophic thermophile
87d1odfa_



not modelled 96.7 20 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Phosphoribulokinase/pantothenate kinase
88d1yrba1



not modelled 96.7 35 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
89c3p1jC_



not modelled 96.7 27 PDB header:hydrolase
Chain: C: PDB Molecule:gtpase imap family member 2;
PDBTitle: crystal structure of human gtpase imap family member 2 in the2 nucleotide-free state
90c3lfuA_



not modelled 96.7 19 PDB header:hydrolase
Chain: A: PDB Molecule:dna helicase ii;
PDBTitle: crystal structure of e. coli uvrd
91c3bosA_



not modelled 96.7 13 PDB header:hydrolase regulator,dna binding protein
Chain: A: PDB Molecule:putative dna replication factor;
PDBTitle: crystal structure of a putative dna replication regulator hda2 (sama_1916) from shewanella amazonensis sb2b at 1.75 a resolution
92d1bifa1



not modelled 96.7 24 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
93c2hcbC_



not modelled 96.7 18 PDB header:replication
Chain: C: PDB Molecule:chromosomal replication initiator protein dnaa;
PDBTitle: structure of amppcp-bound dnaa from aquifex aeolicus
94c3dm5A_



not modelled 96.7 26 PDB header:rna binding protein, transport protein
Chain: A: PDB Molecule:signal recognition 54 kda protein;
PDBTitle: structures of srp54 and srp19, the two proteins assembling2 the ribonucleic core of the signal recognition particle3 from the archaeon pyrococcus furiosus.
95c1zuiA_



not modelled 96.7 30 PDB header:transferase
Chain: A: PDB Molecule:shikimate kinase;
PDBTitle: structural basis for shikimate-binding specificity of helicobacter2 pylori shikimate kinase
96c2pbrB_



not modelled 96.7 27 PDB header:transferase
Chain: B: PDB Molecule:thymidylate kinase;
PDBTitle: crystal structure of thymidylate kinase (aq_969) from aquifex aeolicus2 vf5
97c3lv8A_



not modelled 96.6 25 PDB header:transferase
Chain: A: PDB Molecule:thymidylate kinase;
PDBTitle: 1.8 angstrom resolution crystal structure of a thymidylate kinase2 (tmk) from vibrio cholerae o1 biovar eltor str. n16961 in complex3 with tmp, thymidine-5'-diphosphate and adp
98d1x6va3



not modelled 96.6 23 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Adenosine-5'phosphosulfate kinase (APS kinase)
99c2grjH_



not modelled 96.6 30 PDB header:transferase
Chain: H: PDB Molecule:dephospho-coa kinase;
PDBTitle: crystal structure of dephospho-coa kinase (ec 2.7.1.24)2 (dephosphocoenzyme a kinase) (tm1387) from thermotoga maritima at3 2.60 a resolution
100c2qagB_



not modelled 96.6 32 PDB header:cell cycle, structural protein
Chain: B: PDB Molecule:septin-6;
PDBTitle: crystal structure of human septin trimer 2/6/7
101c2npiB_



not modelled 96.6 23 PDB header:transcription
Chain: B: PDB Molecule:protein clp1;
PDBTitle: clp1-atp-pcf11 complex
102d1gkub1



not modelled 96.6 19 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Helicase-like "domain" of reverse gyrase
103c2qq0B_



not modelled 96.6 16 PDB header:transferase
Chain: B: PDB Molecule:thymidine kinase;
PDBTitle: thymidine kinase from thermotoga maritima in complex with2 thymidine + appnhp
104d1fnna2



not modelled 96.6 22 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Extended AAA-ATPase domain
105d2p67a1



not modelled 96.6 25 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
106c2qa5A_



not modelled 96.6 41 PDB header:cell cycle, structural protein
Chain: A: PDB Molecule:septin-2;
PDBTitle: crystal structure of sept2 g-domain
107d1k6ma1



not modelled 96.5 27 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
108c3t5dC_



not modelled 96.5 41 PDB header:signaling protein
Chain: C: PDB Molecule:septin-7;
PDBTitle: crystal structure of septin 7 in complex with gdp
109c2kjqA_



not modelled 96.5 30 PDB header:replication
Chain: A: PDB Molecule:dnaa-related protein;
PDBTitle: solution structure of protein nmb1076 from neisseria meningitidis.2 northeast structural genomics consortium target mr101b.
110c3bh0A_



not modelled 96.5 13 PDB header:replication
Chain: A: PDB Molecule:dnab-like replicative helicase;
PDBTitle: atpase domain of g40p
111d1ny5a2



not modelled 96.5 15 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Extended AAA-ATPase domain
112c3md0A_



not modelled 96.5 25 PDB header:transport protein
Chain: A: PDB Molecule:arginine/ornithine transport system atpase;
PDBTitle: crystal structure of arginine/ornithine transport system2 atpase from mycobacterium tuberculosis bound to gdp (a ras-3 like gtpase superfamily protein)
113c3be4A_



not modelled 96.5 21 PDB header:transferase
Chain: A: PDB Molecule:adenylate kinase;
PDBTitle: crystal structure of cryptosporidium parvum adenylate kinase cgd5_3360
114d1cr2a_



not modelled 96.5 16 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
115d2afhe1



not modelled 96.5 24 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
116c2plrB_



not modelled 96.5 20 PDB header:transferase
Chain: B: PDB Molecule:probable thymidylate kinase;
PDBTitle: crystal structure of dtmp kinase (st1543) from sulfolobus tokodaii2 strain7
117c3lxwA_



not modelled 96.5 22 PDB header:immune system
Chain: A: PDB Molecule:gtpase imap family member 1;
PDBTitle: crystal structure of human gtpase imap family member 1
118d1e4va1



not modelled 96.5 22 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nucleotide and nucleoside kinases
119d1akya1



not modelled 96.5 30 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nucleotide and nucleoside kinases
120d1zina1



not modelled 96.5 26 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nucleotide and nucleoside kinases

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0